CmaCh08G012130 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTGGAGGGGAAAATCATGAAGCATTCGACCGGTGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGACAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCAAAATCAATCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGTGTGTGTGTATGTGTGTTTCTGTAACTCTGATATGTCTGTATGGCAGCTAATTTTGTTTTAAAATTGATCACTTCTGCTTGAATTGAACATATAAGCTAATACGGAGAACTGAGTGCTGTAGTTAGTTTTAATCGAGGACTGATTTGATCATTAAACTTGGAATTATATTTGTTCCCCTCACTTTTATCTAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGGTAACTTCTAGGTTTATTTACCTGGTTGGATGCTACAGCTACAGCTTTCACCTTGTTGTCCATGTTTAGAGTTAGAGCTTGAATGTTGTTGCTAATATTCCGTTGGGTTATGATCTGACACAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGGTATGCATTTTAATCCTTAACTACGAGTTATCTGATGATTTTATATGAAGTCTGGTTGCTGGTAGGAGTTGATAAACTGATTCTTTCCTCTTTTAACTTGAAGTTTATTACCTCTCATACGGCTCATGGAGCTAATCCCTTGCTTCGAAATTGAATTGGGGCACTTTTTTTCAACCAAATACATTGCCGAACTTTCTCTTTAGTTTTTCGTGTCAGTGAGAATTCGAAACTCTAGCCTTTCAGTTGAGATATAAAATCTTAACCACTTGAGTTATACTCAACTTGTCGATTATGTAAATAATTAATAATTTTCTCTCTTCGGTTGCGTACGACGAAGGTGCAAATTCGTCATTGGGTACAAGTGCAATTCTGTCAGTTTAGTTCTTATTCTGTGTGCGTGACTGCGTGTCGTGCAGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGGTACTTTACTCACTGTTCAATATTTCAAGTTCTCGTGTTTTTTCCCTGATGCATCGAAATTTTGAAATGAATGTAAGATTTCTTGAGTATTGAGTTCTGGTAGCCCACTCACAGAAGTAGGATTTATTGAGAGTGTTGTTCACCGCTAGAGAACTGGCGACCAGGAATTGCAAGACCATTGCAAGACCAGTTGATTTGAAGTAAATTTTCCATATTACTCTCAATCTTTTTTGGTGCTCTTATCCCATTTGTTCCAAATGCCTCTAGCTCGAATGCAATAATATAACTAATCCCATCTCCTTTCAAGCAACGCCCAAGACTATCCTTGGATATTAATACCCGAGAATTTCCGCCCAGGAATTGCATGACCATTGTCTCTGCCAGCTGAAACCCAGATGATTTCAAGTAAATTTTCCATATTACTCAATATTTTTTGGTTCCCTTGTCCCATTTGTAGAAAATGCAGGAATGGATTTTGATAGAATTCAGAGAAATGAAATTCCGAATTATATTGATGACTTGCCAAATAAGAAAATACAGAAGAATGTCGAGTATTTTGAGAATCTTGGACCCCTCCCTCTTGGGTGTACTCGAGCACAAACAACTAAATTATTGCTCGCCTTCATCCCCTCCTACTAACAAAACTTATGATGGCCACCTACCTAAGAAATTAAAATATCACGAGTTCCTTTACAACCAAAGAAACTTCTAGCTAATGACTATTATGCCCTTGGTATCCGAATAACATTTATTACTTTTTCCCAATGGTCTTCCTAACATAATTCCGACTGGTTCGCTCTATCATAAAGCTCCCGTGAGTAGTGTTTGTTTCTTTATCACAATGCAAAACTGCATCTTTTATGCTCAATCATTTTTCTACTGCCATTTTTATTTAGAAAGTTTCCCTCTCAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAG ATGCTGGAGGGGAAAATCATGAAGCATTCGACCGGTGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGACAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCAAAATCAATCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAG ATGCTGGAGGGGAAAATCATGAAGCATTCGACCGGTGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGACAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCAAAATCAATCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAG MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD
BLAST of CmaCh08G012130 vs. Swiss-Prot
Match: TOPRS_MOUSE (E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 3.4e-14 Identity = 77/288 (26.74%), Postives = 119/288 (41.32%), Query Frame = 1
BLAST of CmaCh08G012130 vs. Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 7.6e-06 Identity = 32/103 (31.07%), Postives = 46/103 (44.66%), Query Frame = 1
BLAST of CmaCh08G012130 vs. Swiss-Prot
Match: TOPRS_HUMAN (E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 7.6e-06 Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TrEMBL
Match: A0A0A0KCD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G198260 PE=4 SV=1) HSP 1 Score: 491.5 bits (1264), Expect = 7.1e-136 Identity = 237/292 (81.16%), Postives = 261/292 (89.38%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TrEMBL
Match: A0A061EVY6_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_021158 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 1.7e-81 Identity = 160/287 (55.75%), Postives = 203/287 (70.73%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TrEMBL
Match: V4RYH0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005542mg PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 3.2e-80 Identity = 158/296 (53.38%), Postives = 197/296 (66.55%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TrEMBL
Match: A5ADI5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043444 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 8.0e-79 Identity = 151/281 (53.74%), Postives = 199/281 (70.82%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TrEMBL
Match: F6HDG8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01720 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 8.0e-79 Identity = 152/285 (53.33%), Postives = 200/285 (70.18%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TAIR10
Match: AT2G39100.1 (AT2G39100.1 RING/U-box superfamily protein) HSP 1 Score: 267.7 bits (683), Expect = 8.4e-72 Identity = 138/276 (50.00%), Postives = 184/276 (66.67%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein) HSP 1 Score: 50.4 bits (119), Expect = 2.1e-06 Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 1
BLAST of CmaCh08G012130 vs. TAIR10
Match: AT1G22500.1 (AT1G22500.1 RING/U-box superfamily protein) HSP 1 Score: 48.9 bits (115), Expect = 6.1e-06 Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = 1
BLAST of CmaCh08G012130 vs. NCBI nr
Match: gi|659117204|ref|XP_008458477.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis melo]) HSP 1 Score: 492.7 bits (1267), Expect = 4.6e-136 Identity = 235/282 (83.33%), Postives = 258/282 (91.49%), Query Frame = 1
BLAST of CmaCh08G012130 vs. NCBI nr
Match: gi|700191994|gb|KGN47198.1| (hypothetical protein Csa_6G198260 [Cucumis sativus]) HSP 1 Score: 491.5 bits (1264), Expect = 1.0e-135 Identity = 237/292 (81.16%), Postives = 261/292 (89.38%), Query Frame = 1
BLAST of CmaCh08G012130 vs. NCBI nr
Match: gi|449450666|ref|XP_004143083.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis sativus]) HSP 1 Score: 488.8 bits (1257), Expect = 6.6e-135 Identity = 234/282 (82.98%), Postives = 255/282 (90.43%), Query Frame = 1
BLAST of CmaCh08G012130 vs. NCBI nr
Match: gi|590660866|ref|XP_007035513.1| (RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao]) HSP 1 Score: 310.8 bits (795), Expect = 2.5e-81 Identity = 160/287 (55.75%), Postives = 203/287 (70.73%), Query Frame = 1
BLAST of CmaCh08G012130 vs. NCBI nr
Match: gi|645232978|ref|XP_008223121.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Prunus mume]) HSP 1 Score: 308.9 bits (790), Expect = 9.3e-81 Identity = 164/293 (55.97%), Postives = 208/293 (70.99%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |