CmaCh08G012130.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh08G012130.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr08 : 7444336 .. 7446858 (+)
Sequence length879
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGAGGGGAAAATCATGAAGCATTCGACCGGTGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGACAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCAAAATCAATCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGTGTGTGTGTATGTGTGTTTCTGTAACTCTGATATGTCTGTATGGCAGCTAATTTTGTTTTAAAATTGATCACTTCTGCTTGAATTGAACATATAAGCTAATACGGAGAACTGAGTGCTGTAGTTAGTTTTAATCGAGGACTGATTTGATCATTAAACTTGGAATTATATTTGTTCCCCTCACTTTTATCTAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGGTAACTTCTAGGTTTATTTACCTGGTTGGATGCTACAGCTACAGCTTTCACCTTGTTGTCCATGTTTAGAGTTAGAGCTTGAATGTTGTTGCTAATATTCCGTTGGGTTATGATCTGACACAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGGTATGCATTTTAATCCTTAACTACGAGTTATCTGATGATTTTATATGAAGTCTGGTTGCTGGTAGGAGTTGATAAACTGATTCTTTCCTCTTTTAACTTGAAGTTTATTACCTCTCATACGGCTCATGGAGCTAATCCCTTGCTTCGAAATTGAATTGGGGCACTTTTTTTCAACCAAATACATTGCCGAACTTTCTCTTTAGTTTTTCGTGTCAGTGAGAATTCGAAACTCTAGCCTTTCAGTTGAGATATAAAATCTTAACCACTTGAGTTATACTCAACTTGTCGATTATGTAAATAATTAATAATTTTCTCTCTTCGGTTGCGTACGACGAAGGTGCAAATTCGTCATTGGGTACAAGTGCAATTCTGTCAGTTTAGTTCTTATTCTGTGTGCGTGACTGCGTGTCGTGCAGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGGTACTTTACTCACTGTTCAATATTTCAAGTTCTCGTGTTTTTTCCCTGATGCATCGAAATTTTGAAATGAATGTAAGATTTCTTGAGTATTGAGTTCTGGTAGCCCACTCACAGAAGTAGGATTTATTGAGAGTGTTGTTCACCGCTAGAGAACTGGCGACCAGGAATTGCAAGACCATTGCAAGACCAGTTGATTTGAAGTAAATTTTCCATATTACTCTCAATCTTTTTTGGTGCTCTTATCCCATTTGTTCCAAATGCCTCTAGCTCGAATGCAATAATATAACTAATCCCATCTCCTTTCAAGCAACGCCCAAGACTATCCTTGGATATTAATACCCGAGAATTTCCGCCCAGGAATTGCATGACCATTGTCTCTGCCAGCTGAAACCCAGATGATTTCAAGTAAATTTTCCATATTACTCAATATTTTTTGGTTCCCTTGTCCCATTTGTAGAAAATGCAGGAATGGATTTTGATAGAATTCAGAGAAATGAAATTCCGAATTATATTGATGACTTGCCAAATAAGAAAATACAGAAGAATGTCGAGTATTTTGAGAATCTTGGACCCCTCCCTCTTGGGTGTACTCGAGCACAAACAACTAAATTATTGCTCGCCTTCATCCCCTCCTACTAACAAAACTTATGATGGCCACCTACCTAAGAAATTAAAATATCACGAGTTCCTTTACAACCAAAGAAACTTCTAGCTAATGACTATTATGCCCTTGGTATCCGAATAACATTTATTACTTTTTCCCAATGGTCTTCCTAACATAATTCCGACTGGTTCGCTCTATCATAAAGCTCCCGTGAGTAGTGTTTGTTTCTTTATCACAATGCAAAACTGCATCTTTTATGCTCAATCATTTTTCTACTGCCATTTTTATTTAGAAAGTTTCCCTCTCAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAG

mRNA sequence

ATGCTGGAGGGGAAAATCATGAAGCATTCGACCGGTGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGACAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCAAAATCAATCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAG

Coding sequence (CDS)

ATGCTGGAGGGGAAAATCATGAAGCATTCGACCGGTGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGACAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCGTAGGGTGTATTCGCAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCAAAATCAATCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGGACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAGAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGCAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGGAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTAG

Protein sequence

MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD
BLAST of CmaCh08G012130.1 vs. Swiss-Prot
Match: TOPRS_MOUSE (E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-14
Identity = 77/288 (26.74%), Postives = 119/288 (41.32%), Query Frame = 1

Query: 37  CPICLRELEDRTAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFR 96
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F  +        
Sbjct: 104 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKE 163

Query: 97  KERLPNLNCA-DNLKIGIGSSRTDARR----ILQSTRNELSRDRR--------------S 156
               P+ N +  N ++     RT   R     L S  + +SR                 S
Sbjct: 164 YVLRPSYNGSFTNPEVRRFRYRTTMTRERSASLYSPSSTVSRRTTTPPDSGVLFEGLGIS 223

Query: 157 ERPL-----TWRRSFGRRGPESV---------PTDVIAWRKLQWRASIYDRRIQAVPSSV 216
            RP       + R    RGP +            D+I +R+  +RA +   R++++    
Sbjct: 224 TRPRDVDIPQFMRQMALRGPTTTDERSLRKIQEQDIINFRRTLYRAGV---RVRSIEDGG 283

Query: 217 RSCLVMNLTGSHGVKE-AILERIKPWIQRELEAILGDPDP--TIIVHLVTSLFVARLEAP 276
           R     +++     +  A L R+ PW++REL  + G       I+ H++ S  V R +  
Sbjct: 284 R---YRDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMS-NVTRYDLE 343

Query: 277 SSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEY 289
           S        F+S LRPFL  +T+ F HE   FA S   M  +D    Y
Sbjct: 344 SQA------FVSDLRPFLLNRTEHFIHEFISFARSPFNMAAFDQHANY 376

BLAST of CmaCh08G012130.1 vs. Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.6e-06
Identity = 32/103 (31.07%), Postives = 46/103 (44.66%), Query Frame = 1

Query: 9   HSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWS 68
           H    PA K   EN    VI  +     CP+CL E E+   A+   C H +   CI  W 
Sbjct: 48  HHLPPPAAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWL 107

Query: 69  NLKRTCPLCNAQF---DSWF--CKINLSSRSFRKERLPNLNCA 107
           +   +CPLC  +    D  +   K + + +  +K RL NL+ A
Sbjct: 108 SKTNSCPLCRHELPTDDDTYEEHKRDKARKQQQKHRLENLHGA 150

BLAST of CmaCh08G012130.1 vs. Swiss-Prot
Match: TOPRS_HUMAN (E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.6e-06
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 1

Query: 37  CPICLRELEDRTAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQFDSWF 86
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F
Sbjct: 103 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIF 149

BLAST of CmaCh08G012130.1 vs. TrEMBL
Match: A0A0A0KCD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G198260 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 7.1e-136
Identity = 237/292 (81.16%), Postives = 261/292 (89.38%), Query Frame = 1

Query: 2   LEGKIMKHS--TGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAY 61
           L+ ++MK S  T EPARKLNGENF+ KVISPAICG+TCPICLRELEDRTAAVLTTCIHAY
Sbjct: 46  LKAEVMKRSSSTREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAY 105

Query: 62  CVGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTD 121
           C+ CIRKWSNLKRTCPLCNAQFDSWF KINLSS+SFRKERL   NC+D LK+G+GSS+ D
Sbjct: 106 CISCIRKWSNLKRTCPLCNAQFDSWFTKINLSSQSFRKERLTTSNCSDKLKVGVGSSQID 165

Query: 122 ARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAV 181
           AR ILQSTR EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RK QWRASIY+R IQAV
Sbjct: 166 ARGILQSTRYELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKRQWRASIYNRCIQAV 225

Query: 182 PSSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEA 241
           PSSVRSCL +N+ GS G KE ILERIKPWIQREL+ IL DPDPTIIVHLV SLFVAR+EA
Sbjct: 226 PSSVRSCLELNVLGSRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARIEA 285

Query: 242 PSSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTM 292
            SSQLNAE+DFLSPLRPFL+EKTDLFWHELRCFAGS LRMEEYDSVVEYRT+
Sbjct: 286 TSSQLNAEDDFLSPLRPFLFEKTDLFWHELRCFAGSPLRMEEYDSVVEYRTV 337

BLAST of CmaCh08G012130.1 vs. TrEMBL
Match: A0A061EVY6_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_021158 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.7e-81
Identity = 160/287 (55.75%), Postives = 203/287 (70.73%), Query Frame = 1

Query: 10  STGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSN 69
           S+ + + K   E FV +VISPA+ G+TCPICLR L+ R AAVLT C HAYC+GCIRKWS+
Sbjct: 5   SSAKRSEKSRIEKFVRRVISPAVVGKTCPICLRNLDVRGAAVLTVCSHAYCLGCIRKWSD 64

Query: 70  LKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 129
           LKR CPLCN+ FDSWF KI+LSSR F KE++P L+    +     S+  D RRI++ TR 
Sbjct: 65  LKRKCPLCNSTFDSWFYKIDLSSRKFFKEQVPALSEGKPVIHRPRSTLIDRRRIIERTRE 124

Query: 130 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVM 189
           E++      RPL WRRSFGR  P +VP  VI  RKLQWRAS+Y RR+QA+P S  +    
Sbjct: 125 EMNSVNWRTRPLPWRRSFGR--PGTVPPHVIEERKLQWRASVYKRRLQALPVSPGTSSQQ 184

Query: 190 NLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE----APSSQLN 249
           N+  +   +E IL RIKPWI+RELEAILGDPDP+II+H+V+SLF +R E      S  L 
Sbjct: 185 NVPRNDCEEERILLRIKPWIRRELEAILGDPDPSIILHVVSSLFFSRHEGKYDGSSGLLL 244

Query: 250 AENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 293
            E+DFL PL+PFL+  T++FWHEL CFA SS  +E YD+VVEYR ++
Sbjct: 245 VEDDFLVPLKPFLHNWTNMFWHELSCFAESSFTIETYDAVVEYRQLE 289

BLAST of CmaCh08G012130.1 vs. TrEMBL
Match: V4RYH0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005542mg PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.2e-80
Identity = 158/296 (53.38%), Postives = 197/296 (66.55%), Query Frame = 1

Query: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60
           M    + K S      K   E FV +VISPAI  Q CPICL  L  R  AVL  C HAYC
Sbjct: 1   MESSSLRKSSYHMKREKREREKFVSRVISPAIRWQKCPICLDNLTVRRTAVLKVCTHAYC 60

Query: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120
           + CI KWSNLKR CPLCNA F SWF +INLSS  F +++L  L           SS    
Sbjct: 61  LECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQLQPLIKDKTFISQCHSSPRTP 120

Query: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180
            RI++ +R+E+S DR   RPL WRRSFGR  P SVP +V++ RKL+WRAS+Y+   QAVP
Sbjct: 121 HRIIRRSRDEISSDRGRSRPLPWRRSFGR--PGSVPDEVVSERKLRWRASVYNAGFQAVP 180

Query: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE-- 240
            S R CL  N +G++ VK  +++RI PWI+REL+A+LGDPDP+IIVH+ ++LF+A LE  
Sbjct: 181 LSPRRCLGQNASGNNFVKGRLVQRIDPWIRRELQALLGDPDPSIIVHVASTLFIASLEGK 240

Query: 241 --APSSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 293
             A   Q + E+DF +PLRPFL  +TD+FWHELRCFA SSL  E YD+VVEYR +D
Sbjct: 241 LNAAPRQPSVEDDFWAPLRPFLLNQTDMFWHELRCFAESSLTPETYDAVVEYRKLD 294

BLAST of CmaCh08G012130.1 vs. TrEMBL
Match: A5ADI5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043444 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 8.0e-79
Identity = 151/281 (53.74%), Postives = 199/281 (70.82%), Query Frame = 1

Query: 10  STGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSN 69
           S    + +++   FV KV++PAI G++CPICL  + DR AAV+T C+HAYC  CIR+WS+
Sbjct: 13  SLSSSSSRMSRGKFVKKVMAPAIEGKSCPICLSHVVDRRAAVITACLHAYCFRCIRRWSD 72

Query: 70  LKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 129
           LKR CPLCNA FDS F +I+LSS++F KE+L  L     +  G G++    RR+++   +
Sbjct: 73  LKRKCPLCNAHFDSLFYRISLSSQTFLKEKLRPLAEGGTVNFGGGNA---GRRVIRRYWD 132

Query: 130 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVM 189
           E + D R  RPL WRRSFGR  P S+P+DV+A R LQWRASIY + +QAVP S R+ L  
Sbjct: 133 EXNSDGRRTRPLPWRRSFGR--PGSLPSDVVAERILQWRASIYSQGMQAVPFSPRNRLKQ 192

Query: 190 NLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE--APSSQLNAE 249
           N++G+   KE IL+RI+PWIQREL AIL DPDP +IVH+ TSLFV+ LE   P   L  E
Sbjct: 193 NISGNSSAKERILQRIEPWIQRELHAILHDPDPAVIVHVATSLFVSSLEENTPLGYLGGE 252

Query: 250 NDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEY 289
           +DFL+PLR FL+ +T+ FWHEL CFA S+  ME YD+VV+Y
Sbjct: 253 DDFLAPLRSFLHNQTNTFWHELSCFADSTFNMETYDAVVKY 288

BLAST of CmaCh08G012130.1 vs. TrEMBL
Match: F6HDG8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01720 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 8.0e-79
Identity = 152/285 (53.33%), Postives = 200/285 (70.18%), Query Frame = 1

Query: 10  STGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSN 69
           S+   + +++   FV KV++PAI G++CPICL  + DR AAV+T C+HAYC  CIR+WS+
Sbjct: 15  SSSSSSSRMSRGKFVKKVMAPAIEGKSCPICLSHVVDRRAAVITACLHAYCFRCIRRWSD 74

Query: 70  LKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 129
           LKR CPLCNA FDS F +I+LSS++F KE+L  L     +  G G++    RR+L+   +
Sbjct: 75  LKRKCPLCNAHFDSLFYRISLSSQTFLKEKLRPLAEGGTVNFGGGNA---GRRVLRRYWD 134

Query: 130 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVM 189
           E + D R  RPL WRRSFGR  P S+P+DV+A R LQWRASIY + +QAVP S R+ L  
Sbjct: 135 ESNSDSRRTRPLPWRRSFGR--PGSLPSDVVAERILQWRASIYSQGMQAVPFSPRNRLKQ 194

Query: 190 NLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE--APSSQLNAE 249
           N++G+   KE IL+RI+PWIQREL AIL DPD  +IVH+ TSLFV+ LE   P   L  E
Sbjct: 195 NISGNSSAKERILQRIEPWIQRELHAILHDPDAAVIVHVATSLFVSSLEENTPLGYLGGE 254

Query: 250 NDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 293
           +DFL+PLR FL+ +T+ FWHEL CFA S+  ME YD+VV+Y   D
Sbjct: 255 DDFLAPLRSFLHNQTNTFWHELSCFADSTFNMETYDAVVKYEPSD 294

BLAST of CmaCh08G012130.1 vs. TAIR10
Match: AT2G39100.1 (AT2G39100.1 RING/U-box superfamily protein)

HSP 1 Score: 267.7 bits (683), Expect = 8.4e-72
Identity = 138/276 (50.00%), Postives = 184/276 (66.67%), Query Frame = 1

Query: 23  FVVKVISPAICGQTCPICLREL-EDRTAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNAQF 82
           F  + I PA+ G++CPICL  L E R+AAV+T C H YC+ CIRKWS+ KR CPLCN +F
Sbjct: 25  FAGRAIFPALQGKSCPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCNTRF 84

Query: 83  DSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPL 142
           DSWF   + +SR + KE+LP L   + L     ++ +D RRI+Q +R+ L       RPL
Sbjct: 85  DSWFIVSDFASRKYHKEQLPILRDRETLTYH-RNNPSDRRRIIQRSRDVLENSSSRSRPL 144

Query: 143 TWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVMNLTGSHGVKEAI 202
            WRRSFGR  P SVP  VI  RKLQWRASIY ++++AV    R  L ++L  +   K  I
Sbjct: 145 PWRRSFGR--PGSVPDSVIFQRKLQWRASIYTKQLRAVRLHSRR-LELSLAVNDYTKAKI 204

Query: 203 LERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAE-----NDFLSPLRP 262
            ERI+PWI+REL+A+LGDPDP++IVH  ++LF+ RLE  +++   +      D +S LR 
Sbjct: 205 TERIEPWIRRELQAVLGDPDPSVIVHFASALFIKRLERENNRQTGQTGMLVEDEVSSLRK 264

Query: 263 FLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 293
           FL +K D+FWHELRCFA S L ME YD+VVEY  ++
Sbjct: 265 FLSDKVDIFWHELRCFAESILTMETYDAVVEYNEVE 296

BLAST of CmaCh08G012130.1 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 2.1e-06
Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 1

Query: 34 GQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSNLKR--TCPLCNAQFD 83
          G  C ICL E+  +  A++  C H YCV CI +W++ K   TCP C   FD
Sbjct: 43 GGCCAICLSEIPLQETAMVKGCEHTYCVTCILRWASCKESPTCPQCKHPFD 93

BLAST of CmaCh08G012130.1 vs. TAIR10
Match: AT1G22500.1 (AT1G22500.1 RING/U-box superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 6.1e-06
Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = 1

Query: 37  CPICLRELED-RTAAVLTTCIHAYCVGCIRKWSNLKRTCPLCNA 80
           CP+CL E ED  T  ++  C H +  GCI  W   + TCPLC A
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRA 161

BLAST of CmaCh08G012130.1 vs. NCBI nr
Match: gi|659117204|ref|XP_008458477.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis melo])

HSP 1 Score: 492.7 bits (1267), Expect = 4.6e-136
Identity = 235/282 (83.33%), Postives = 258/282 (91.49%), Query Frame = 1

Query: 10  STGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSN 69
           ST EPARKLNGENF+ KVISPAICG+TCPICLRELEDRTAAVLTTCIHAYC+GCIRKWSN
Sbjct: 6   STREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 65

Query: 70  LKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 129
           LKRTCPLCNAQFDSWF KINLSS+SFRKERL   NC++ LK+G+GSS+TDAR ILQSTR 
Sbjct: 66  LKRTCPLCNAQFDSWFTKINLSSQSFRKERLKTSNCSEKLKVGVGSSQTDARGILQSTRY 125

Query: 130 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVM 189
           EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RKLQWRASIY+R IQAVPSSVRSCL +
Sbjct: 126 ELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKLQWRASIYNRCIQAVPSSVRSCLEL 185

Query: 190 NLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAEND 249
           N+ G+ G KE ILERIKPWIQREL+ IL DPDPTIIVHLV SLFVARLEA SSQLNAE+D
Sbjct: 186 NILGNRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARLEATSSQLNAEDD 245

Query: 250 FLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTM 292
           FLSPLRPFL+EKTDLFWHELRCFAGS LRMEEYDSVVEYR++
Sbjct: 246 FLSPLRPFLFEKTDLFWHELRCFAGSPLRMEEYDSVVEYRSV 287

BLAST of CmaCh08G012130.1 vs. NCBI nr
Match: gi|700191994|gb|KGN47198.1| (hypothetical protein Csa_6G198260 [Cucumis sativus])

HSP 1 Score: 491.5 bits (1264), Expect = 1.0e-135
Identity = 237/292 (81.16%), Postives = 261/292 (89.38%), Query Frame = 1

Query: 2   LEGKIMKHS--TGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAY 61
           L+ ++MK S  T EPARKLNGENF+ KVISPAICG+TCPICLRELEDRTAAVLTTCIHAY
Sbjct: 46  LKAEVMKRSSSTREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAY 105

Query: 62  CVGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTD 121
           C+ CIRKWSNLKRTCPLCNAQFDSWF KINLSS+SFRKERL   NC+D LK+G+GSS+ D
Sbjct: 106 CISCIRKWSNLKRTCPLCNAQFDSWFTKINLSSQSFRKERLTTSNCSDKLKVGVGSSQID 165

Query: 122 ARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAV 181
           AR ILQSTR EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RK QWRASIY+R IQAV
Sbjct: 166 ARGILQSTRYELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKRQWRASIYNRCIQAV 225

Query: 182 PSSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEA 241
           PSSVRSCL +N+ GS G KE ILERIKPWIQREL+ IL DPDPTIIVHLV SLFVAR+EA
Sbjct: 226 PSSVRSCLELNVLGSRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARIEA 285

Query: 242 PSSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTM 292
            SSQLNAE+DFLSPLRPFL+EKTDLFWHELRCFAGS LRMEEYDSVVEYRT+
Sbjct: 286 TSSQLNAEDDFLSPLRPFLFEKTDLFWHELRCFAGSPLRMEEYDSVVEYRTV 337

BLAST of CmaCh08G012130.1 vs. NCBI nr
Match: gi|449450666|ref|XP_004143083.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis sativus])

HSP 1 Score: 488.8 bits (1257), Expect = 6.6e-135
Identity = 234/282 (82.98%), Postives = 255/282 (90.43%), Query Frame = 1

Query: 10  STGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSN 69
           ST EPARKLNGENF+ KVISPAICG+TCPICLRELEDRTAAVLTTCIHAYC+ CIRKWSN
Sbjct: 6   STREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCISCIRKWSN 65

Query: 70  LKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 129
           LKRTCPLCNAQFDSWF KINLSS+SFRKERL   NC+D LK+G+GSS+ DAR ILQSTR 
Sbjct: 66  LKRTCPLCNAQFDSWFTKINLSSQSFRKERLTTSNCSDKLKVGVGSSQIDARGILQSTRY 125

Query: 130 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVM 189
           EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RK QWRASIY+R IQAVPSSVRSCL +
Sbjct: 126 ELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKRQWRASIYNRCIQAVPSSVRSCLEL 185

Query: 190 NLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAEND 249
           N+ GS G KE ILERIKPWIQREL+ IL DPDPTIIVHLV SLFVAR+EA SSQLNAE+D
Sbjct: 186 NVLGSRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARIEATSSQLNAEDD 245

Query: 250 FLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTM 292
           FLSPLRPFL+EKTDLFWHELRCFAGS LRMEEYDSVVEYRT+
Sbjct: 246 FLSPLRPFLFEKTDLFWHELRCFAGSPLRMEEYDSVVEYRTV 287

BLAST of CmaCh08G012130.1 vs. NCBI nr
Match: gi|590660866|ref|XP_007035513.1| (RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 310.8 bits (795), Expect = 2.5e-81
Identity = 160/287 (55.75%), Postives = 203/287 (70.73%), Query Frame = 1

Query: 10  STGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIRKWSN 69
           S+ + + K   E FV +VISPA+ G+TCPICLR L+ R AAVLT C HAYC+GCIRKWS+
Sbjct: 5   SSAKRSEKSRIEKFVRRVISPAVVGKTCPICLRNLDVRGAAVLTVCSHAYCLGCIRKWSD 64

Query: 70  LKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 129
           LKR CPLCN+ FDSWF KI+LSSR F KE++P L+    +     S+  D RRI++ TR 
Sbjct: 65  LKRKCPLCNSTFDSWFYKIDLSSRKFFKEQVPALSEGKPVIHRPRSTLIDRRRIIERTRE 124

Query: 130 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSSVRSCLVM 189
           E++      RPL WRRSFGR  P +VP  VI  RKLQWRAS+Y RR+QA+P S  +    
Sbjct: 125 EMNSVNWRTRPLPWRRSFGR--PGTVPPHVIEERKLQWRASVYKRRLQALPVSPGTSSQQ 184

Query: 190 NLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE----APSSQLN 249
           N+  +   +E IL RIKPWI+RELEAILGDPDP+II+H+V+SLF +R E      S  L 
Sbjct: 185 NVPRNDCEEERILLRIKPWIRRELEAILGDPDPSIILHVVSSLFFSRHEGKYDGSSGLLL 244

Query: 250 AENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTMD 293
            E+DFL PL+PFL+  T++FWHEL CFA SS  +E YD+VVEYR ++
Sbjct: 245 VEDDFLVPLKPFLHNWTNMFWHELSCFAESSFTIETYDAVVEYRQLE 289

BLAST of CmaCh08G012130.1 vs. NCBI nr
Match: gi|645232978|ref|XP_008223121.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Prunus mume])

HSP 1 Score: 308.9 bits (790), Expect = 9.3e-81
Identity = 164/293 (55.97%), Postives = 208/293 (70.99%), Query Frame = 1

Query: 7   MKHSTGEPA-RKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYCVGCIR 66
           M+ S  +P+ R  + E  V +VI PAI G+ CPICL  LE R+AAVLT+C HAYCV CIR
Sbjct: 1   MEGSPRKPSERSRSREKLVGRVIWPAIRGKNCPICLGALEPRSAAVLTSCNHAYCVRCIR 60

Query: 67  KWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQ 126
           KWS L+R CPLCNA FDSWF  I+LSSRSF +E LP L+          +S + + R+ Q
Sbjct: 61  KWSGLRRKCPLCNADFDSWFSHISLSSRSFHREILPPLD---------STSSSRSFRLQQ 120

Query: 127 S---TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVPSS 186
               +R+  + +RR  RPL WRRSFGR  P SV  DVIA RKLQWR S+Y+RR+QAVPS+
Sbjct: 121 EEHPSRHVRNSERRRSRPLPWRRSFGR--PGSVTPDVIAERKLQWRVSLYERRLQAVPSA 180

Query: 187 VRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE---- 246
            RS L +++  + GVKE IL+RI+PWI REL+A+L D DP+IIVH+ TSLF+A LE    
Sbjct: 181 PRSRLQVSVPINDGVKERILQRIEPWILRELQALLRDRDPSIIVHVATSLFIASLENEGH 240

Query: 247 APSSQLNAENDFLSPLRPFLYEKTDLFWHELRCFAGSSLRMEEYDSVVEYRTM 292
            PS Q +  +DFL+ LRPFL ++TD+FWHELRCFA SS  ME YD+VVEY+ +
Sbjct: 241 VPSRQCDVRDDFLARLRPFLLDRTDMFWHELRCFAESSFNMETYDAVVEYKRL 282

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TOPRS_MOUSE3.4e-1426.74E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1[more]
RN181_BOVIN7.6e-0631.07E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1[more]
TOPRS_HUMAN7.6e-0642.86E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KCD1_CUCSA7.1e-13681.16Uncharacterized protein OS=Cucumis sativus GN=Csa_6G198260 PE=4 SV=1[more]
A0A061EVY6_THECC1.7e-8155.75RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_021... [more]
V4RYH0_9ROSI3.2e-8053.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005542mg PE=4 SV=1[more]
A5ADI5_VITVI8.0e-7953.74Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043444 PE=4 SV=1[more]
F6HDG8_VITVI8.0e-7953.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01720 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G39100.18.4e-7250.00 RING/U-box superfamily protein[more]
AT5G19430.12.1e-0643.14 RING/U-box superfamily protein[more]
AT1G22500.16.1e-0645.45 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659117204|ref|XP_008458477.1|4.6e-13683.33PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis melo][more]
gi|700191994|gb|KGN47198.1|1.0e-13581.16hypothetical protein Csa_6G198260 [Cucumis sativus][more]
gi|449450666|ref|XP_004143083.1|6.6e-13582.98PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis sativus][more]
gi|590660866|ref|XP_007035513.1|2.5e-8155.75RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao][more]
gi|645232978|ref|XP_008223121.1|9.3e-8155.97PREDICTED: E3 ubiquitin-protein ligase Topors [Prunus mume][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR002483PWI_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh08G012130CmaCh08G012130gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh08G012130.1CmaCh08G012130.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G012130.1.exon.5CmaCh08G012130.1.exon.5exon
CmaCh08G012130.1.exon.4CmaCh08G012130.1.exon.4exon
CmaCh08G012130.1.exon.3CmaCh08G012130.1.exon.3exon
CmaCh08G012130.1.exon.2CmaCh08G012130.1.exon.2exon
CmaCh08G012130.1.exon.1CmaCh08G012130.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G012130.1.CDS.1CmaCh08G012130.1.CDS.1CDS
CmaCh08G012130.1.CDS.2CmaCh08G012130.1.CDS.2CDS
CmaCh08G012130.1.CDS.3CmaCh08G012130.1.CDS.3CDS
CmaCh08G012130.1.CDS.4CmaCh08G012130.1.CDS.4CDS
CmaCh08G012130.1.CDS.5CmaCh08G012130.1.CDS.5CDS


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 36..78
score: 1.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 37..77
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 37..78
score: 13
IPR002483PWI domainGENE3DG3DSA:1.20.1390.10coord: 202..269
score: 1.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 35..81
score: 1.8
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 55..64
scor
NoneNo IPR availablePANTHERPTHR22937RING FINGER CONTAINING PROTEINcoord: 28..292
score: 1.1E
NoneNo IPR availablePANTHERPTHR22937:SF50SUBFAMILY NOT NAMEDcoord: 28..292
score: 1.1E
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 31..84
score: 9.66