Cp4.1LG17g00880 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g00880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING/U-box superfamily protein
LocationCp4.1LG17 : 75337 .. 80119 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGTCACCGATTTTTGCTGAACCCCGAGAAGGCCCAAAATACTGGTCTAACGATGGTGATCACTTTGGGCCTATAAATCACGATGGTGACCACTATACGTTTTGGGCCCATGGGCCCTATTTGGTTCAGGGATAGCGTTTGGGCTGGGCTGAAAATACATTTGGATGGAGGCCTAAATATGGCCCAATAATCCGTGATAGGTTTGAGCCTTGAAAGTCTGTTTCTCTCCTACCTGGCACAGTATGCTGGTGGGGAAAATCATGAAGCATTCGACCCGAGAACCGGCGCGAAATCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGTGAAACCTGCCNCTTAATTACGGCCCAATAATCCGTGATAGGTTTGAGCCTTGAAAGTCTGTTTCTCTCCCACCTGGCACAGTATGCTGGTGGGGAAAATCATGGAGCATTCGACCCGAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGGTGTATTCGAAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCACAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGTACCGACGCTCGCAGGTGTGTGTGTATGTGTGTTTCTGTAACTCTGATATGTCTGTATCGCAGCTAATTTTGTTTTAAAATTGATCACTTCTGCTTGAATTGAACATATAAGCTAATACGGAGAACTGAGTGCTGTAGTTAGTTTTAATCGAGGACTGATTTGATCATTAAACTTGGAATTATATTTGTTCCCCTCACTTTTATTTAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAAAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGAAAGGTAACTTCTCGGTTTATTTACCTGGTTGGATGCTGCAGCTATAGCTTTCACCTTGTTGTCCATGTTTAGAGTTAGAGCTTGAATGTTGTTGCTAATATTCCGTTGGGTTATGATCTGACACAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGGTATGCATTTTAATCCTTAACTACGAGTTATCTGATGATTTTACATGAAGTCTGGTTGCTGGTAGGAGTTGCTAAACTGATTCTTTCCTCTTTTAACTTGAAGTTTATTACCTCACATACAGTTCATGGGGCTAATCCCTTGCTTCGAAATTGAGGGCACTTTTTCTCAACCAAATACATTGCTTGAACTTTCTCTTTAGTTTTTTGTGTTATTGAGAATTCGAAACTCTAGCCTTTTCAGTTGAGATATAAAATCTTAACCACTTGAGTTATACTCAACTTGTCAATTATGTAAATAATTAATAATTTTCTCTCTTCGGTTGCGTACAACGAAGGTGCAAATTCGTCATTGGGTACAAGTGCAATTCTGTTAGTTTAGTTCTTATTCTGTGTGCGTGACTGCGTGTTGTGCAGAACTTAACAGTAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGGTACTTTACTCACTGTTCAATATTTCAAGTTCTCGTGTTTTTTCCCTGATGCATCTAAATTTTGAAATGAATGTAAGATTTCTTGAGTATTGAGTTCTGGTAGCCCACTCACAGAAGTAGGATTTATTGAGAGTGTTGTTCACCGCTAGATTCAGTAACAATACCGTATACTAGAGAATTGGCGACCAGGAATTGCAAGACCATTGTATCTGCCCTTAAACTGAAACCCAGTTGATTTGAAGTAAATTTTCCTTATTACTCTCAATCTTTTTTGGTGCTCTTATCCCATTTGTTCCAAATGCCTCTAGCTCGAATGCAATAATACAACTAATCCCATCTCCTTTCAAGCAACGCCCGAGACTATCCTTGGATATTAATACCCGAGAATTTCCGACCAGGAATTGCATGACCATTGTCTCTGCCAGCTGAAACCCAGATGATTTCAAGTAAATTTTCCATATTACTCAATATTTTTTGGTTCCCTTGTCCCATTTGTACTGATTTCCTCTAGGATGCAATAATATAACTAATCCCCACCTCCTTTCAAGCAATGTCCCAGACTATCCTTGGCTATTGACTTACTGTATTAACTTGCTCAGAGCAACCCTCTTATATATGAAGTAAGAAAATGCAGGAATGGATTTTGATAGAATTCAGAGAAATGAAAATCCGAATTATATTGATGACTTGCCAAATAAGAAAATACAGAAGAATGTCGAGTATTTTGAGAATCTTGGACCCCTCCCTCTTGGGTGTACTCGAGCACAAACAACTAAATTATTGCTCGCCTTCATCCCCTCCTACTAACAAAACTTATGATGGCCACCTACCTAAGAAATTAAAATATCACGAGTTCCTTTACAACCAAAGAAACTTCTAGCTAATGACTATTATGCCCTTGGTATCCGAATAACATTTCTTACTTTTTCCCAATGGTCTTCCTAACATAATTCCTACTGGTTCGCTCTATCATAAAGCTCCCGTGAGTAGTGTTTGTTTCTTTATCGCAATACAAAACTGCATCTTTTATGATCAATCATTTTTCTACTGCCATTTTTATTTAGAAAGTTTCCCTCTCAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTCGTTGTAGCGAAGATTCTGTTTGAAGAGGTATGTTATACTCATGACTCTCTCCTGTGGGTTGCTGGTTATACTTGAAATGAATTGTGACATTCATATGAAGTAAATGTTATAGCAAGGTACCAGAATCGTGGCATGGGTGCAATTTCTTATTCTTACGTTATCCTGTATGAAAGAACTAAGATATCTTCTGCTGCCGAAGATTATAAACACGATCTGCAGTTCGGGTGTGTTAGTTTGGTGCATCTTTTCCCACACGTCGCTTACATTGATTTCTCAATGATTTCCATTCGACCTGCAAATCATTTGGGAGAAGACTGTTTGAGGATACATTTTATAATGATCTTCTCTCTGGTTGTGGGATGGTCTCCCCAACAACGAATGGATTGGGGTCGTTGCTCGATCGGGGTCGTTTTTCTAGCCTGACCTGGAAGAAAGACACTTGGAAACAGAGATTATGTAGCCTGCACGCCACCACATAGGCTCTGAAGATAGTATTGTGTTTTTAGTATTCATACGTTTTATTTCTTTTGCACCCAAATCGTCCCGTTAAATAGTGTCTGTAATTGACTCGTTGCTGATTGAGCCTTCCCCGTCCTTACTTCACCCCGTGGACAGCTCCAAGTGTAATGGACTTGATGCTTGATTACTTTATATTAGTACTTCCATTGCTTTGTGGCTCATGTATTTATTCGAACATTTTCAAATCTTTCTTTGTGGAAGTCTTTTTCTTCCCATCCTAGATTATATTCCATGGCTGCATGCCTAAGATCTATGCTTGGTATATTGCCTTCTTTTCAAATTTCTCTGTCCTGTTTTCTAAAACTTTTTTTTCAAAATGAGTTTTTCAAAACGGGCCCAAAGGCTTGAACATAAGTTGTCTAGCCGTAGGCGACGTGATCATAAGTTAAGTGACTTAACTCGAAAGTTGGTTTATCTCACTTTAACTTAACTCTAAAGTTAGACTTATCCTACTTGGTGCTGAGAAAGTGTATAGGTTTAAATGAGAGAGTGTATAGGTTTAAATAACAAAATAAAAATAGGGTATAAGAAATTTCACAAAAATCAACATGAAGAGATGAGAATGAAGAGATGAGAATGAAGAGATGAGAAGCTAATTGAAGCTTTTCACTGACTTTGAACGTTGTTCTCAATTTGAAAATTGGGTGAGCCCTAGTCCAATTCACTCTTTTGCTTGAGAATTGGGTGAGCCCTAGTTCAATTCACTCTTTTCCTTAAGCGAGGCCGGGCGGGATTATCTTATTGTTCTTCAAAATTCGGCTTCAATGTCTAAGTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATTCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCCCGGGTTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAA

mRNA sequence

ATGAATATCTGTTTCTCTCCTACCTGGCACAGTATGCTGGTGGGGAAAATCATGAAGCATTCGACCCGAGAACCGGCGCGAAATCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGTCTGTTTCTCTCCCACCTGGCACAGTATGCTGGTGGGGAAAATCATGGAGCATTCGACCCGAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGGTGTATTCGAAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCACAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGTACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAAAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGAAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGTAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGCGAGGCCGGGCGGGATTATCTTATTGTTCTTCAAAATTCGGCTTCAATGTCTAAGTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATTCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCCCGGGTTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAA

Coding sequence (CDS)

ATGAATATCTGTTTCTCTCCTACCTGGCACAGTATGCTGGTGGGGAAAATCATGAAGCATTCGACCCGAGAACCGGCGCGAAATCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGTCTGTTTCTCTCCCACCTGGCACAGTATGCTGGTGGGGAAAATCATGGAGCATTCGACCCGAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGGTGTATTCGAAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCACAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGTACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAAAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGAAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGTAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGCGAGGCCGGGCGGGATTATCTTATTGTTCTTCAAAATTCGGCTTCAATGTCTAAGTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATTCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCCCGGGTTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAA

Protein sequence

MNICFSPTWHSMLVGKIMKHSTREPARNLNGENFVVKVISPAICVCFSPTWHSMLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAENDFLSPLRPFLYEKTDLFWHELSEAGRDYLIVLQNSASMSKFLCKTLLQVRHLTTISPYSKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRVLLSNPNGTLLPKLEFLYTRGASSSE
Homology
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BLAST of Cp4.1LG17g00880 vs. Swiss-Prot
Match: TOPRS_MOUSE (E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-11
Identity = 75/270 (27.78%), Postives = 115/270 (42.59%), Query Frame = 1 

Query: 90  CPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFR 149
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F +++       
Sbjct: 104 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKE 163

Query: 150 KERLPNLNCA-DNLKIGIGSSRTDARR----ILQSTRNELSRDRR--------------S 209
               P+ N +  N ++     RT   R     L S  + +SR                 S
Sbjct: 164 YVLRPSYNGSFTNPEVRRFRYRTTMTRERSASLYSPSSTVSRRTTTPPDSGVLFEGLGIS 223

Query: 210 ERPL-----TWRRSFGRRGPESVPTDVIAWRKLQWRESI-YDRRIQAVPSSVRSC----L 269
            RP       + R    RGP +  TD  + RK+Q ++ I + R +      VRS      
Sbjct: 224 TRPRDVDIPQFMRQMALRGPTT--TDERSLRKIQEQDIINFRRTLYRAGVRVRSIEDGGR 283

Query: 270 VMNLTVSHGVKE-AILERIKPWIQRELEAILGDPDP--TIIVHLVTSLFVARLEAPSSQL 328
             +++     +  A L R+ PW++REL  + G       I+ H++ S  V R +  S   
Sbjct: 284 YRDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMS-NVTRYDLESQA- 343

[Close]
BLAST of Cp4.1LG17g00880 vs. Swiss-Prot
Match: TOPRS_HUMAN (E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.1e-06
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 1 

Query: 90  CPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIK 143
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F +++
Sbjct: 103 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVR 153

[Close]
BLAST of Cp4.1LG17g00880 vs. Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.1e-06
Identity = 32/104 (30.77%), Postives = 45/104 (43.27%), Query Frame = 1 

Query: 61  EHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKW 120
           +H    PA K   EN    VI  +     CP+CL E E+   A+   C H +   CI  W
Sbjct: 47  DHHLPPPAAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPW 106

Query: 121 SNLKRTCPLCNAQFDSWFCTIKLSSR-----SFRKERLPNLNCA 160
            +   +CPLC  +  +   T +   R       +K RL NL+ A
Sbjct: 107 LSKTNSCPLCRHELPTDDDTYEEHKRDKARKQQQKHRLENLHGA 150

[Close]
BLAST of Cp4.1LG17g00880 vs. TrEMBL
Match: A0A0A0KCD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G198260 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 1.2e-121
Identity = 217/280 (77.50%), Postives = 240/280 (85.71%), Query Frame = 1 

Query: 45  VCFSPTWHSMLVGKIMEHS--TREPARKLNGENFVVKVISPAICGETCPICLRELEDRTA 104
           +C    +H  L  ++M+ S  TREPARKLNGENF+ KVISPAICGETCPICLRELEDRTA
Sbjct: 36  LCCLLLFHRTLKAEVMKRSSSTREPARKLNGENFITKVISPAICGETCPICLRELEDRTA 95

Query: 105 AVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNL 164
           AVLTTCIHAYCI CIRKWSNLKRTCPLCNAQFDSWF  I LSS+SFRKERL   NC+D L
Sbjct: 96  AVLTTCIHAYCISCIRKWSNLKRTCPLCNAQFDSWFTKINLSSQSFRKERLTTSNCSDKL 155

Query: 165 KIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRE 224
           K+G+GSS+ DAR ILQSTR EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RK QWR 
Sbjct: 156 KVGVGSSQIDARGILQSTRYELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKRQWRA 215

Query: 225 SIYDRRIQAVPSSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLV 284
           SIY+R IQAVPSSVRSCL +N+  S G KE ILERIKPWIQREL+ IL DPDPTIIVHLV
Sbjct: 216 SIYNRCIQAVPSSVRSCLELNVLGSRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLV 275

Query: 285 TSLFVARLEAPSSQLNAENDFLSPLRPFLYEKTDLFWHEL 323
            SLFVAR+EA SSQLNAE+DFLSPLRPFL+EKTDLFWHEL
Sbjct: 276 ISLFVARIEATSSQLNAEDDFLSPLRPFLFEKTDLFWHEL 315

[Close]
BLAST of Cp4.1LG17g00880 vs. TrEMBL
Match: M5XPX5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014684mg PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 7.2e-74
Identity = 151/271 (55.72%), Postives = 192/271 (70.85%), Query Frame = 1 

Query: 60  MEHSTREPA-RKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIR 119
           ME S R+P+ R  + E  V +VI PA  G+ CPICL  LE R+AAVLT+C HAYC+ CIR
Sbjct: 1   MEASPRKPSERSRSREKLVGRVIWPATRGQNCPICLGALEPRSAAVLTSCNHAYCVRCIR 60

Query: 120 KWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQ 179
           KWS L+R CPLCNA FDSWF  I LSSRSF +E LP L+          +S + + R+ Q
Sbjct: 61  KWSGLRRKCPLCNADFDSWFSYISLSSRSFHREILPPLD---------NTSSSRSFRLQQ 120

Query: 180 S---TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSS 239
               +R+  + +RR  RPL WRRSFGR  P SV  DVIA RKLQWR S+Y+RR+QAVPS+
Sbjct: 121 EEHPSRHVRNSERRRSRPLPWRRSFGR--PGSVTPDVIAERKLQWRVSVYERRLQAVPSA 180

Query: 240 VRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE---- 299
            RS L +++ ++ GVKE IL RI+PWI+REL+A+LGD DP+IIVH+ TSLF+A LE    
Sbjct: 181 PRSRLQVSVPINDGVKERILRRIEPWIRRELQALLGDRDPSIIVHVATSLFIASLENEGH 240

Query: 300 APSSQLNAENDFLSPLRPFLYEKTDLFWHEL 323
            PS Q +  +DFL+ LRPFL ++TD+FWHEL
Sbjct: 241 VPSGQCDVRDDFLARLRPFLLDRTDMFWHEL 260

[Close]
BLAST of Cp4.1LG17g00880 vs. TrEMBL
Match: A0A061EVY6_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_021158 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.5e-71
Identity = 146/265 (55.09%), Postives = 184/265 (69.43%), Query Frame = 1 

Query: 63  STREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 122
           S+ + + K   E FV +VISPA+ G+TCPICLR L+ R AAVLT C HAYC+GCIRKWS+
Sbjct: 5   SSAKRSEKSRIEKFVRRVISPAVVGKTCPICLRNLDVRGAAVLTVCSHAYCLGCIRKWSD 64

Query: 123 LKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 182
           LKR CPLCN+ FDSWF  I LSSR F KE++P L+    +     S+  D RRI++ TR 
Sbjct: 65  LKRKCPLCNSTFDSWFYKIDLSSRKFFKEQVPALSEGKPVIHRPRSTLIDRRRIIERTRE 124

Query: 183 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVM 242
           E++      RPL WRRSFGR  P +VP  VI  RKLQWR S+Y RR+QA+P S  +    
Sbjct: 125 EMNSVNWRTRPLPWRRSFGR--PGTVPPHVIEERKLQWRASVYKRRLQALPVSPGTSSQQ 184

Query: 243 NLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE----APSSQLN 302
           N+  +   +E IL RIKPWI+RELEAILGDPDP+II+H+V+SLF +R E      S  L 
Sbjct: 185 NVPRNDCEEERILLRIKPWIRRELEAILGDPDPSIILHVVSSLFFSRHEGKYDGSSGLLL 244

Query: 303 AENDFLSPLRPFLYEKTDLFWHELS 324
            E+DFL PL+PFL+  T++FWHELS
Sbjct: 245 VEDDFLVPLKPFLHNWTNMFWHELS 267

[Close]
BLAST of Cp4.1LG17g00880 vs. TrEMBL
Match: A5ADI5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043444 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 139/263 (52.85%), Postives = 182/263 (69.20%), Query Frame = 1 

Query: 63  STREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 122
           S    + +++   FV KV++PAI G++CPICL  + DR AAV+T C+HAYC  CIR+WS+
Sbjct: 13  SLSSSSSRMSRGKFVKKVMAPAIEGKSCPICLSHVVDRRAAVITACLHAYCFRCIRRWSD 72

Query: 123 LKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 182
           LKR CPLCNA FDS F  I LSS++F KE+L  L     +  G G++    RR+++   +
Sbjct: 73  LKRKCPLCNAHFDSLFYRISLSSQTFLKEKLRPLAEGGTVNFGGGNA---GRRVIRRYWD 132

Query: 183 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVM 242
           E + D R  RPL WRRSFGR  P S+P+DV+A R LQWR SIY + +QAVP S R+ L  
Sbjct: 133 EXNSDGRRTRPLPWRRSFGR--PGSLPSDVVAERILQWRASIYSQGMQAVPFSPRNRLKQ 192

Query: 243 NLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE--APSSQLNAE 302
           N++ +   KE IL+RI+PWIQREL AIL DPDP +IVH+ TSLFV+ LE   P   L  E
Sbjct: 193 NISGNSSAKERILQRIEPWIQRELHAILHDPDPAVIVHVATSLFVSSLEENTPLGYLGGE 252

Query: 303 NDFLSPLRPFLYEKTDLFWHELS 324
           +DFL+PLR FL+ +T+ FWHELS
Sbjct: 253 DDFLAPLRSFLHNQTNTFWHELS 270

[Close]
BLAST of Cp4.1LG17g00880 vs. TrEMBL
Match: F6HDG8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01720 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.3e-69
Identity = 139/263 (52.85%), Postives = 182/263 (69.20%), Query Frame = 1 

Query: 63  STREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 122
           S+   + +++   FV KV++PAI G++CPICL  + DR AAV+T C+HAYC  CIR+WS+
Sbjct: 15  SSSSSSSRMSRGKFVKKVMAPAIEGKSCPICLSHVVDRRAAVITACLHAYCFRCIRRWSD 74

Query: 123 LKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 182
           LKR CPLCNA FDS F  I LSS++F KE+L  L     +  G G++    RR+L+   +
Sbjct: 75  LKRKCPLCNAHFDSLFYRISLSSQTFLKEKLRPLAEGGTVNFGGGNA---GRRVLRRYWD 134

Query: 183 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVM 242
           E + D R  RPL WRRSFGR  P S+P+DV+A R LQWR SIY + +QAVP S R+ L  
Sbjct: 135 ESNSDSRRTRPLPWRRSFGR--PGSLPSDVVAERILQWRASIYSQGMQAVPFSPRNRLKQ 194

Query: 243 NLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE--APSSQLNAE 302
           N++ +   KE IL+RI+PWIQREL AIL DPD  +IVH+ TSLFV+ LE   P   L  E
Sbjct: 195 NISGNSSAKERILQRIEPWIQRELHAILHDPDAAVIVHVATSLFVSSLEENTPLGYLGGE 254

Query: 303 NDFLSPLRPFLYEKTDLFWHELS 324
           +DFL+PLR FL+ +T+ FWHELS
Sbjct: 255 DDFLAPLRSFLHNQTNTFWHELS 272

[Close]
BLAST of Cp4.1LG17g00880 vs. TAIR10
Match: AT2G39100.1 (AT2G39100.1 RING/U-box superfamily protein)

HSP 1 Score: 239.2 bits (609), Expect = 5.1e-63
Identity = 124/253 (49.01%), Postives = 166/253 (65.61%), Query Frame = 1 

Query: 76  FVVKVISPAICGETCPICLREL-EDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQF 135
           F  + I PA+ G++CPICL  L E R+AAV+T C H YC+ CIRKWS+ KR CPLCN +F
Sbjct: 25  FAGRAIFPALQGKSCPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCNTRF 84

Query: 136 DSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPL 195
           DSWF     +SR + KE+LP L   + L     ++ +D RRI+Q +R+ L       RPL
Sbjct: 85  DSWFIVSDFASRKYHKEQLPILRDRETLTYH-RNNPSDRRRIIQRSRDVLENSSSRSRPL 144

Query: 196 TWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVMNLTVSHGVKEAI 255
            WRRSFGR  P SVP  VI  RKLQWR SIY ++++AV    R  L ++L V+   K  I
Sbjct: 145 PWRRSFGR--PGSVPDSVIFQRKLQWRASIYTKQLRAVRLHSRR-LELSLAVNDYTKAKI 204

Query: 256 LERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAE-----NDFLSPLRP 315
            ERI+PWI+REL+A+LGDPDP++IVH  ++LF+ RLE  +++   +      D +S LR 
Sbjct: 205 TERIEPWIRRELQAVLGDPDPSVIVHFASALFIKRLERENNRQTGQTGMLVEDEVSSLRK 264

Query: 316 FLYEKTDLFWHEL 323
           FL +K D+FWHEL
Sbjct: 265 FLSDKVDIFWHEL 273

[Close]
BLAST of Cp4.1LG17g00880 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 80.1 bits (196), Expect = 4.0e-15
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 381 SFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRV 440
           SFT++YLI+SC LSP+SA+ AS+ +   SPE+P+ V++  ++HGF+ A IS ++ K P +
Sbjct: 69  SFTLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVL 128

Query: 441 LLSNPNGTLLPKLEFLYTRGASSS 465
           LL+N    LLPKL F  + G S S
Sbjct: 129 LLANAESVLLPKLSFFLSIGVSKS 152

[Close]
BLAST of Cp4.1LG17g00880 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-15
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1 

Query: 381 SFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRV 440
           SFTVSYL++SC LS ESA S S+ V  +S +KPD V++ FK+HGF+   I+ +I  +PRV
Sbjct: 56  SFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRV 115

Query: 441 LLSNPNGTLLPKLEFLYTRGASSSE 466
           L  +P   + PKL F  + G S+S+
Sbjct: 116 LSLSPEDVISPKLMFFSSIGFSTSD 140

[Close]
BLAST of Cp4.1LG17g00880 vs. TAIR10
Match: AT1G61980.1 (AT1G61980.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-14
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 

Query: 375 VASDSHSFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFII 434
           V     SFTVSYL++S  L  + A S S+ VSF   + PD V++  ++HGF+ + IS I+
Sbjct: 46  VGRKGKSFTVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIV 105

Query: 435 WKYPRVLLSNPNGTLLPKLEFLYTRGASSSE 466
             YP++L+++   +L PKL+FL +RGASSSE
Sbjct: 106 TDYPQLLVADAEKSLAPKLQFLQSRGASSSE 136

[Close]
BLAST of Cp4.1LG17g00880 vs. TAIR10
Match: AT1G62110.1 (AT1G62110.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-14
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 

Query: 381 SFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRV 440
           +FTVSYL++S  L+ + A S SK VSF++   PDLV+S F+++GF+ + IS II  YPR+
Sbjct: 52  NFTVSYLVDSLGLATKLAESISKKVSFVNKGNPDLVLSLFRSYGFTNSQISSIITDYPRL 111

Query: 441 LLSNPNGTLLPKLEFLYTRGASSSE 466
           LL +   +L  KL+FL +RGASS E
Sbjct: 112 LLIDAEKSLDIKLQFLESRGASSPE 136

[Close]
BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: gi|659117204|ref|XP_008458477.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis melo])

HSP 1 Score: 446.4 bits (1147), Expect = 6.0e-122
Identity = 215/260 (82.69%), Postives = 234/260 (90.00%), Query Frame = 1 

Query: 63  STREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 122
           STREPARKLNGENF+ KVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN
Sbjct: 6   STREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 65

Query: 123 LKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 182
           LKRTCPLCNAQFDSWF  I LSS+SFRKERL   NC++ LK+G+GSS+TDAR ILQSTR 
Sbjct: 66  LKRTCPLCNAQFDSWFTKINLSSQSFRKERLKTSNCSEKLKVGVGSSQTDARGILQSTRY 125

Query: 183 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVM 242
           EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RKLQWR SIY+R IQAVPSSVRSCL +
Sbjct: 126 ELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKLQWRASIYNRCIQAVPSSVRSCLEL 185

Query: 243 NLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAEND 302
           N+  + G KE ILERIKPWIQREL+ IL DPDPTIIVHLV SLFVARLEA SSQLNAE+D
Sbjct: 186 NILGNRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARLEATSSQLNAEDD 245

Query: 303 FLSPLRPFLYEKTDLFWHEL 323
           FLSPLRPFL+EKTDLFWHEL
Sbjct: 246 FLSPLRPFLFEKTDLFWHEL 265

[Close]
BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: gi|700191994|gb|KGN47198.1| (hypothetical protein Csa_6G198260 [Cucumis sativus])

HSP 1 Score: 444.9 bits (1143), Expect = 1.7e-121
Identity = 217/280 (77.50%), Postives = 240/280 (85.71%), Query Frame = 1 

Query: 45  VCFSPTWHSMLVGKIMEHS--TREPARKLNGENFVVKVISPAICGETCPICLRELEDRTA 104
           +C    +H  L  ++M+ S  TREPARKLNGENF+ KVISPAICGETCPICLRELEDRTA
Sbjct: 36  LCCLLLFHRTLKAEVMKRSSSTREPARKLNGENFITKVISPAICGETCPICLRELEDRTA 95

Query: 105 AVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNL 164
           AVLTTCIHAYCI CIRKWSNLKRTCPLCNAQFDSWF  I LSS+SFRKERL   NC+D L
Sbjct: 96  AVLTTCIHAYCISCIRKWSNLKRTCPLCNAQFDSWFTKINLSSQSFRKERLTTSNCSDKL 155

Query: 165 KIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRE 224
           K+G+GSS+ DAR ILQSTR EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RK QWR 
Sbjct: 156 KVGVGSSQIDARGILQSTRYELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKRQWRA 215

Query: 225 SIYDRRIQAVPSSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLV 284
           SIY+R IQAVPSSVRSCL +N+  S G KE ILERIKPWIQREL+ IL DPDPTIIVHLV
Sbjct: 216 SIYNRCIQAVPSSVRSCLELNVLGSRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLV 275

Query: 285 TSLFVARLEAPSSQLNAENDFLSPLRPFLYEKTDLFWHEL 323
            SLFVAR+EA SSQLNAE+DFLSPLRPFL+EKTDLFWHEL
Sbjct: 276 ISLFVARIEATSSQLNAEDDFLSPLRPFLFEKTDLFWHEL 315

[Close]
BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: gi|449450666|ref|XP_004143083.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 2.5e-120
Identity = 213/260 (81.92%), Postives = 231/260 (88.85%), Query Frame = 1 

Query: 63  STREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 122
           STREPARKLNGENF+ KVISPAICGETCPICLRELEDRTAAVLTTCIHAYCI CIRKWSN
Sbjct: 6   STREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCISCIRKWSN 65

Query: 123 LKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 182
           LKRTCPLCNAQFDSWF  I LSS+SFRKERL   NC+D LK+G+GSS+ DAR ILQSTR 
Sbjct: 66  LKRTCPLCNAQFDSWFTKINLSSQSFRKERLTTSNCSDKLKVGVGSSQIDARGILQSTRY 125

Query: 183 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVM 242
           EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RK QWR SIY+R IQAVPSSVRSCL +
Sbjct: 126 ELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKRQWRASIYNRCIQAVPSSVRSCLEL 185

Query: 243 NLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAEND 302
           N+  S G KE ILERIKPWIQREL+ IL DPDPTIIVHLV SLFVAR+EA SSQLNAE+D
Sbjct: 186 NVLGSRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARIEATSSQLNAEDD 245

Query: 303 FLSPLRPFLYEKTDLFWHEL 323
           FLSPLRPFL+EKTDLFWHEL
Sbjct: 246 FLSPLRPFLFEKTDLFWHEL 265

[Close]
BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: gi|596295074|ref|XP_007226943.1| (hypothetical protein PRUPE_ppa014684mg [Prunus persica])

HSP 1 Score: 286.2 bits (731), Expect = 1.0e-73
Identity = 151/271 (55.72%), Postives = 192/271 (70.85%), Query Frame = 1 

Query: 60  MEHSTREPA-RKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIR 119
           ME S R+P+ R  + E  V +VI PA  G+ CPICL  LE R+AAVLT+C HAYC+ CIR
Sbjct: 1   MEASPRKPSERSRSREKLVGRVIWPATRGQNCPICLGALEPRSAAVLTSCNHAYCVRCIR 60

Query: 120 KWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQ 179
           KWS L+R CPLCNA FDSWF  I LSSRSF +E LP L+          +S + + R+ Q
Sbjct: 61  KWSGLRRKCPLCNADFDSWFSYISLSSRSFHREILPPLD---------NTSSSRSFRLQQ 120

Query: 180 S---TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSS 239
               +R+  + +RR  RPL WRRSFGR  P SV  DVIA RKLQWR S+Y+RR+QAVPS+
Sbjct: 121 EEHPSRHVRNSERRRSRPLPWRRSFGR--PGSVTPDVIAERKLQWRVSVYERRLQAVPSA 180

Query: 240 VRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE---- 299
            RS L +++ ++ GVKE IL RI+PWI+REL+A+LGD DP+IIVH+ TSLF+A LE    
Sbjct: 181 PRSRLQVSVPINDGVKERILRRIEPWIRRELQALLGDRDPSIIVHVATSLFIASLENEGH 240

Query: 300 APSSQLNAENDFLSPLRPFLYEKTDLFWHEL 323
            PS Q +  +DFL+ LRPFL ++TD+FWHEL
Sbjct: 241 VPSGQCDVRDDFLARLRPFLLDRTDMFWHEL 260

[Close]
BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: gi|645232978|ref|XP_008223121.1| (PREDICTED: E3 ubiquitin-protein ligase Topors [Prunus mume])

HSP 1 Score: 283.5 bits (724), Expect = 6.7e-73
Identity = 151/271 (55.72%), Postives = 192/271 (70.85%), Query Frame = 1 

Query: 60  MEHSTREPA-RKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIR 119
           ME S R+P+ R  + E  V +VI PAI G+ CPICL  LE R+AAVLT+C HAYC+ CIR
Sbjct: 1   MEGSPRKPSERSRSREKLVGRVIWPAIRGKNCPICLGALEPRSAAVLTSCNHAYCVRCIR 60

Query: 120 KWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQ 179
           KWS L+R CPLCNA FDSWF  I LSSRSF +E LP L+          +S + + R+ Q
Sbjct: 61  KWSGLRRKCPLCNADFDSWFSHISLSSRSFHREILPPLD---------STSSSRSFRLQQ 120

Query: 180 S---TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSS 239
               +R+  + +RR  RPL WRRSFGR  P SV  DVIA RKLQWR S+Y+RR+QAVPS+
Sbjct: 121 EEHPSRHVRNSERRRSRPLPWRRSFGR--PGSVTPDVIAERKLQWRVSLYERRLQAVPSA 180

Query: 240 VRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLE---- 299
            RS L +++ ++ GVKE IL+RI+PWI REL+A+L D DP+IIVH+ TSLF+A LE    
Sbjct: 181 PRSRLQVSVPINDGVKERILQRIEPWILRELQALLRDRDPSIIVHVATSLFIASLENEGH 240

Query: 300 APSSQLNAENDFLSPLRPFLYEKTDLFWHEL 323
            PS Q +  +DFL+ LRPFL ++TD+FWHEL
Sbjct: 241 VPSRQCDVRDDFLARLRPFLLDRTDMFWHEL 260

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g00880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TOPRS_MOUSE1.1e-1127.78E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1[more]
TOPRS_HUMAN4.1e-0639.62E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1[more]
RN181_BOVIN7.1e-0630.77E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1[more]
BLAST of Cp4.1LG17g00880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCD1_CUCSA1.2e-12177.50Uncharacterized protein OS=Cucumis sativus GN=Csa_6G198260 PE=4 SV=1[more]
M5XPX5_PRUPE7.2e-7455.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014684mg PE=4 SV=1[more]
A0A061EVY6_THECC1.5e-7155.09RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_021... [more]
A5ADI5_VITVI1.8e-6952.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043444 PE=4 SV=1[more]
F6HDG8_VITVI5.3e-6952.85Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01720 PE=4 SV=... [more]
BLAST of Cp4.1LG17g00880 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39100.15.1e-6349.01 RING/U-box superfamily protein[more]
AT5G07900.14.0e-1547.62 Mitochondrial transcription termination factor family protein[more]
AT1G21150.15.2e-1548.24 Mitochondrial transcription termination factor family protein[more]
AT1G61980.11.2e-1445.05 Mitochondrial transcription termination factor family protein[more]
AT1G62110.11.5e-1450.59 Mitochondrial transcription termination factor family protein[more]
BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117204|ref|XP_008458477.1|6.0e-12282.69PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis melo][more]
gi|700191994|gb|KGN47198.1|1.7e-12177.50hypothetical protein Csa_6G198260 [Cucumis sativus][more]
gi|449450666|ref|XP_004143083.1|2.5e-12081.92PREDICTED: E3 ubiquitin-protein ligase Topors [Cucumis sativus][more]
gi|596295074|ref|XP_007226943.1|1.0e-7355.72hypothetical protein PRUPE_ppa014684mg [Prunus persica][more]
gi|645232978|ref|XP_008223121.1|6.7e-7355.72PREDICTED: E3 ubiquitin-protein ligase Topors [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006397mRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR003690MTERF
IPR002483PWI_dom
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g00880.1Cp4.1LG17g00880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 89..131
score: 9.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 90..130
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 90..131
score: 12
IPR002483PWI domainGENE3DG3DSA:1.20.1390.10coord: 254..322
score: 2.
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 417..465
score: 1.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 88..134
score: 5.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 108..117
scor
NoneNo IPR availablePANTHERPTHR22937RING FINGER CONTAINING PROTEINcoord: 81..323
score: 4.3
NoneNo IPR availablePANTHERPTHR22937:SF50SUBFAMILY NOT NAMEDcoord: 81..323
score: 4.3
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 84..137
score: 2.59

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g00880Cucsa.172140Cucumber (Gy14) v1cgycpeB0474
Cp4.1LG17g00880CmaCh06G014840Cucurbita maxima (Rimu)cmacpeB822
Cp4.1LG17g00880CmaCh08G012130Cucurbita maxima (Rimu)cmacpeB915
Cp4.1LG17g00880CmoCh08G011860Cucurbita moschata (Rifu)cmocpeB852
Cp4.1LG17g00880Cla009320Watermelon (97103) v1cpewmB340
Cp4.1LG17g00880Csa6G198250Cucumber (Chinese Long) v2cpecuB326
Cp4.1LG17g00880MELO3C021348Melon (DHL92) v3.5.1cpemeB283
Cp4.1LG17g00880ClCG06G005290Watermelon (Charleston Gray)cpewcgB297
Cp4.1LG17g00880CSPI06G14870Wild cucumber (PI 183967)cpecpiB327
Cp4.1LG17g00880Lsi09G014100Bottle gourd (USVL1VR-Ls)cpelsiB247
Cp4.1LG17g00880MELO3C021348.2Melon (DHL92) v3.6.1cpemedB331
Cp4.1LG17g00880CsaV3_6G017340Cucumber (Chinese Long) v3cpecucB0407
Cp4.1LG17g00880CsaV3_3G014380Cucumber (Chinese Long) v3cpecucB0379
Cp4.1LG17g00880Bhi12G001849Wax gourdcpewgoB0390
Cp4.1LG17g00880CsGy6G014750Cucumber (Gy14) v2cgybcpeB787
Cp4.1LG17g00880Carg15964Silver-seed gourdcarcpeB0452
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g00880Melon (DHL92) v3.6.1cpemedB368
Cp4.1LG17g00880Silver-seed gourdcarcpeB0102
Cp4.1LG17g00880Silver-seed gourdcarcpeB0859
Cp4.1LG17g00880Wax gourdcpewgoB0398
Cp4.1LG17g00880Cucurbita pepo (Zucchini)cpecpeB158
Cp4.1LG17g00880Cucurbita pepo (Zucchini)cpecpeB337
Cp4.1LG17g00880Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG17g00880Cucumber (Gy14) v1cgycpeB0678
Cp4.1LG17g00880Cucurbita maxima (Rimu)cmacpeB270
Cp4.1LG17g00880Cucurbita maxima (Rimu)cmacpeB377
Cp4.1LG17g00880Cucurbita moschata (Rifu)cmocpeB233
Cp4.1LG17g00880Cucurbita moschata (Rifu)cmocpeB340
Cp4.1LG17g00880Cucurbita moschata (Rifu)cmocpeB776
Cp4.1LG17g00880Wild cucumber (PI 183967)cpecpiB307
Cp4.1LG17g00880Cucumber (Chinese Long) v2cpecuB307
Cp4.1LG17g00880Bottle gourd (USVL1VR-Ls)cpelsiB268
Cp4.1LG17g00880Watermelon (Charleston Gray)cpewcgB291
Cp4.1LG17g00880Watermelon (97103) v1cpewmB329
Cp4.1LG17g00880Melon (DHL92) v3.5.1cpemeB314
Cp4.1LG17g00880Cucumber (Gy14) v2cgybcpeB348