CmaCh06G009800 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G009800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP synthase subunit delta
Location	Cma_Chr06 : 6648594 .. 6649826 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTCTAACAAGCTCTGTTTCAACTCTCAGAGTTCCATCCACTTTAGCTTCATCTCGCGACCTTCTTCACCTCAAGAATCACTCTGCTCATCTTCCTCATCGCTCTCCTTCTCGCAGATCCAACTCAATCTCCAAACCCCCTAATTTTCTCTCTACTCACAAAACCCTAAATCCGCTTCCGTTTTCTTCTTCCTTCTCCTCTTCCTCCCCGCGCCGCTCCTCTTCGCCGTTACTTCACCGTCGTCCTGCTGCTGGATACGCCGCGGCACTCGTCGATGCATCGCAAACTACCGGATCGATTCACTCGGTGGCGAAGGACGTTGGGAGATTCTCGAAGGTTCTGAGAACGAAGCGAATCGGGGGGTTTTTGAACGATCCGTTTGTAGGGGAGGAGGAGAAAGGGCGATTGGTGAGGGAAATTGCGGCGAAGGGAGGGTTTGAGAAACAGGTGGTAAAGTTGACGAAGATGTTGATTGAGAAAAAGAGATTGGGGATTCTGAATGAGGTGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTTTTGGTGTCTTCCAACAGGAAGATGCAGGAAGAGGAGCTGTTTGGGATTGCGAAGAATGTGCAGAGGCTTAGTGGGGCTATGAAAGTGAAGGTTAGAAGCTTCATCAATGGCGGATTAATGGTGTAGAGGAAGGTAATCTGGCTACAGAAGCTTTGAGTATGTGTTCAATTCACTTATCATTTTGATTACATTTCTTCTTCTTCAAGCTTCTACACTCAGCCCATTTTCTTCTCTTCTTCTTCTTCTCTTTTGATCGCATTCTTCAGCCACTCAATGTTTGCCTTCTCCTAAACAAAAATGGTGGGAAGCAATTTAATGGGGTTGTTTTTAATTTGCAGAAATTTGTGCTGGAACTGGAAATTGTCGTGGTTTTCGAATTTTAGGTAATCTCGACCCCCACCCCAACCCCCACCAAGCAAGATTTCCCTACCTCACAAATGAATATCAGAACAGTTCCCCTCCTCTTTCAACCAACATTATTTTAGCCCTTTTCCTCTGTAACTTCACATATGATACGAGAAGTAGATCGAGAAAAACAAGTTTTTGTGGAACACATTATGTAAATATATTTTCAACTGGCACTCTGTGTTTGTTTTGAATCTCCGGATCTTTCTTTTGCAATCATTAATGTAGCGTTATATGTGGAAATTTATGGTGCATTAGGATGAT

mRNA sequence

ATGGATACTCTAACAAGCTCTGTTTCAACTCTCAGAGTTCCATCCACTTTAGCTTCATCTCGCGACCTTCTTCACCTCAAGAATCACTCTGCTCATCTTCCTCATCGCTCTCCTTCTCGCAGATCCAACTCAATCTCCAAACCCCCTAATTTTCTCTCTACTCACAAAACCCTAAATCCGCTTCCGTTTTCTTCTTCCTTCTCCTCTTCCTCCCCGCGCCGCTCCTCTTCGCCGTTACTTCACCGTCGTCCTGCTGCTGGATACGCCGCGGCACTCGTCGATGCATCGCAAACTACCGGATCGATTCACTCGGTGGCGAAGGACGTTGGGAGATTCTCGAAGGTTCTGAGAACGAAGCGAATCGGGGGGTTTTTGAACGATCCGTTTGTAGGGGAGGAGGAGAAAGGGCGATTGGTGAGGGAAATTGCGGCGAAGGGAGGGTTTGAGAAACAGGTGGTAAAGTTGACGAAGATGTTGATTGAGAAAAAGAGATTGGGGATTCTGAATGAGGTGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTTTTGGTGTCTTCCAACAGGAAGATGCAGGAAGAGGAGCTGTTTGGGATTGCGAAGAATGTGCAGAGGCTTAGTGGGGCTATGAAAGTGAAGGTTAGAAGCTTCATCAATGGCGGATTAATGAAATTTGTGCTGGAACTGGAAATTGTCGTGGTTTTCGAATTTTAGGTAATCTCGACCCCCACCCCAACCCCCACCAAGCAAGATTTCCCTACCTCACAAATGAATATCAGAACAGTTCCCCTCCTCTTTCAACCAACATTATTTTAGCCCTTTTCCTCTGTAACTTCACATATGATACGAGAAGTAGATCGAGAAAAACAAGTTTTTGTGGAACACATTATGTAAATATATTTTCAACTGGCACTCTGTGTTTGTTTTGAATCTCCGGATCTTTCTTTTGCAATCATTAATGTAGCGTTATATGTGGAAATTTATGGTGCATTAGGATGAT

Coding sequence (CDS)

ATGGATACTCTAACAAGCTCTGTTTCAACTCTCAGAGTTCCATCCACTTTAGCTTCATCTCGCGACCTTCTTCACCTCAAGAATCACTCTGCTCATCTTCCTCATCGCTCTCCTTCTCGCAGATCCAACTCAATCTCCAAACCCCCTAATTTTCTCTCTACTCACAAAACCCTAAATCCGCTTCCGTTTTCTTCTTCCTTCTCCTCTTCCTCCCCGCGCCGCTCCTCTTCGCCGTTACTTCACCGTCGTCCTGCTGCTGGATACGCCGCGGCACTCGTCGATGCATCGCAAACTACCGGATCGATTCACTCGGTGGCGAAGGACGTTGGGAGATTCTCGAAGGTTCTGAGAACGAAGCGAATCGGGGGGTTTTTGAACGATCCGTTTGTAGGGGAGGAGGAGAAAGGGCGATTGGTGAGGGAAATTGCGGCGAAGGGAGGGTTTGAGAAACAGGTGGTAAAGTTGACGAAGATGTTGATTGAGAAAAAGAGATTGGGGATTCTGAATGAGGTGTTGAGCGAATTCGAGAGGATTTATGATGAGCTTTGTGGAACTGAAGTGGTTTTGGTGTCTTCCAACAGGAAGATGCAGGAAGAGGAGCTGTTTGGGATTGCGAAGAATGTGCAGAGGCTTAGTGGGGCTATGAAAGTGAAGGTTAGAAGCTTCATCAATGGCGGATTAATGAAATTTGTGCTGGAACTGGAAATTGTCGTGGTTTTCGAATTTTAG

Protein sequence

MDTLTSSVSTLRVPSTLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTLNPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLMKFVLELEIVVVFEF

Homology

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BLAST of CmaCh06G009800 vs. Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.5e-19
Identity = 47/144 (32.64%), Postives = 85/144 (59.03%), Query Frame = 1


Query: 85  AAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAA 144
           A  YA AL D +++ G++     D+ +  K+   + +  F   P VGEE+K  LV EI +
Sbjct: 66  AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVS 125

Query: 145 KGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGI 204
               +  V     +L++ KR+ ++ E++ EFE++Y+ L  TE+ +V+S  K++ + L  I
Sbjct: 126 SSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQI 185

Query: 205 AKNVQRLSGAMKVKVRSFINGGLM 229
           AK VQRL+G+  V++++ I+  L+
Sbjct: 186 AKGVQRLTGSKNVRIKTVIDESLV 209

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BLAST of CmaCh06G009800 vs. Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-17
Identity = 59/198 (29.80%), Postives = 107/198 (54.04%), Query Frame = 1


Query: 52  LSTHKTLN-PLPFSSSFSSSS----PRRS---SSPLLHRRPAAG-------------YAA 111
           LST  T + P PFS SFSSS+    P R    ++  L  +P  G             YA+
Sbjct: 21  LSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYAS 80

Query: 112 ALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEK 171
           AL D +  TG++ +   DV +  ++   + +  F  +P +  + K  ++ EI    G + 
Sbjct: 81  ALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQP 140

Query: 172 QVVKLTKMLIEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQR 229
                  +LI+ +R+ ++ E+L+EFE +++++ GTEV +V+S  K++ + L  IAK VQ+
Sbjct: 141 HTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQK 200

[Close]

BLAST of CmaCh06G009800 vs. Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-17
Identity = 60/212 (28.30%), Postives = 106/212 (50.00%), Query Frame = 1


Query: 31  AHLPHRSPSRRSNSISKPPNFLSTHKTLNPLPFSSSFSSSSPRRSSSPLLHRRPAAG--- 90
           A L H + S  S  I K  N L+    LN L  S+ +S     +   PL   R + G   
Sbjct: 2   ASLQHTTASLHSKHIPKTTNILTRKPILN-LSSSTFYSPKLKLKLKLPLTKTRRSTGGAL 61

Query: 91  -----------YAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVGEEEKG 150
                      YAAAL D + +  ++ ++  D  +  ++    ++  + + P V +  K 
Sbjct: 62  GARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKR 121

Query: 151 RLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKM 210
           +L+ E A   GF+        +LI+ KR+ ++ +++ EFE +Y+ L  TE+V+V+S  K+
Sbjct: 122 QLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKL 181

Query: 211 QEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           +   L  IAK VQ+L+GA KV+ ++ ++  L+
Sbjct: 182 ESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLV 212

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BLAST of CmaCh06G009800 vs. Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 56/192 (29.17%), Postives = 100/192 (52.08%), Query Frame = 1


Query: 39  SRRSNSISKPPNFLSTHKTLNPLPFSSSFSSSSPRRSSSPLLHRRPAAG--YAAALVDAS 98
           S  S +    P   S  +    LP   S   + PRR    +  R  AA   YA+AL + +
Sbjct: 20  SASSGATPAAPRSASFARAARGLP---SLRLAPPRRRGDLVRPRAEAAADSYASALSEVA 79

Query: 99  QTTGSIHSVAKDVGRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLT 158
              G++     D+ +  K+   + +  F ++P V  EEK  L+ EIA     +  VV   
Sbjct: 80  VENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALIDEIAKSYELQPHVVNFI 139

Query: 159 KMLIEKKRLGILNEVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMK 218
            ++++  R  IL E++ EFE I++ L GTEV  V+S  +++ ++L  IA++VQ+++GA  
Sbjct: 140 NVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQDLAQIAQHVQKMTGAKN 199

Query: 219 VKVRSFINGGLM 229
           V++++ ++  L+
Sbjct: 200 VRLKTQLDPELI 208

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BLAST of CmaCh06G009800 vs. Swiss-Prot
Match: ATPD_ARATH (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 45/179 (25.14%), Postives = 89/179 (49.72%), Query Frame = 1


Query: 62  PFSSSFSSSSPRRSSSPL------------LHRRPAAGYAAALVDASQTTGSIHSVAKDV 121
           P S   + S P R + P+            +    A+ YA AL D ++   ++     D+
Sbjct: 17  PSSFQIARSLPLRKTFPIRINNGGNAAGARMSATAASSYAMALADVAKRNDTMELTVTDI 76

Query: 122 GRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILN 181
            +  +V    ++  F  +P +  E+K +++ +I      +        +L++  R+ I+ 
Sbjct: 77  EKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHTSNFLNVLVDANRINIVT 136

Query: 182 EVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           E++ EFE +Y++L  T++  V S  K++  +L  IAK VQ+L+GA  V+V++ I+  L+
Sbjct: 137 EIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAKQVQKLTGAKNVRVKTVIDASLV 195

[Close]

BLAST of CmaCh06G009800 vs. TrEMBL
Match: A0A0A0L326_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119340 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 6.0e-88
Identity = 184/232 (79.31%), Postives = 204/232 (87.93%), Query Frame = 1


Query: 1   MDTLT--SSVSTLRVPS-TLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MDTLT  S  S LRVPS TL SSRD LHLKN +AHLPHRSPSR SNSISKPPNFLST +T
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNP-LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           LNP +PFS+      PRRSSSPLLHRRPA+GYAAAL+DASQ+TG+IHSVAKDVGRFSK+L
Sbjct: 61  LNPSIPFST------PRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLL 120

Query: 121 RTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFE 180
           R KRIG  LNDP VG+EEKGRLV+EIA KGGFE+QVVKLTKMLIEK +L IL EV SEFE
Sbjct: 121 RGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFE 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           R+YDELCGTEVV+VSS++KM+EEEL GIAKNVQRLSGA+KVKVRSFI+GGLM
Sbjct: 181 RVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 226

[Close]

BLAST of CmaCh06G009800 vs. TrEMBL
Match: A0A0D2U272_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G127400 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.2e-41
Identity = 111/235 (47.23%), Postives = 152/235 (64.68%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVPSTLASSRDLLH-LK--NHSAHLPHRSPSRRSNSISKPPNFLST--- 60
           MD L+SSVS+   P+   S+   LH LK  N   HLP  SP R     +  P  +ST   
Sbjct: 1   MDPLSSSVSSRLKPTNFNSTPRQLHPLKPLNRPRHLPPPSPQRPLLFSTTKPTTISTSFT 60

Query: 61  HKTLNPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSK 120
           HK L  LP     +S  P  SSS  +HR PA GYAAAL+D +Q+TGS+H V +DV + S+
Sbjct: 61  HKNLTALPIFPHPTSLLP--SSSLHVHRTPATGYAAALLDTTQSTGSLHEVRRDVRKLSR 120

Query: 121 VLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSE 180
           +L+  +I   LNDPF+G++EKG+ ++E+A KG F K +  L K+++EK +LGI++EVL E
Sbjct: 121 LLQNSQIQALLNDPFLGDQEKGKAMKELAKKGKFNKHLFNLLKVMVEKNKLGIVSEVLEE 180

Query: 181 FERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLMK 230
           FER+YDEL GT+ V VSS + + E+ LF IA  VQ LSGA+KVKV++ +   L K
Sbjct: 181 FERVYDELIGTKQVWVSSEKMIGEDMLFKIAMKVQNLSGAVKVKVKNLVIDKLPK 233

[Close]

BLAST of CmaCh06G009800 vs. TrEMBL
Match: W9RLH4_9ROSA (ATP synthase delta chain OS=Morus notabilis GN=L484_023464 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.2e-41
Identity = 110/244 (45.08%), Postives = 154/244 (63.11%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVP---STLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MD L+SSVSTL+VP   ST +    L H K         +PS+     S  PN   T  T
Sbjct: 1   MDPLSSSVSTLKVPTLHSTTSRHELLTHFKT--------TPSKNLPYSSLLPNKTPTFTT 60

Query: 61  LNPLPFSSSFSSSSPRRSSS--------PLLHRRPAAGYAAALVDASQTTGSIHSVAKDV 120
            NP    SSFSS+SP RS +        P+ HR PA GYAAAL+D +Q   S+ SV +DV
Sbjct: 61  QNPFT-PSSFSSTSPTRSLTAPSPSPRPPIHHRNPATGYAAALLDVAQANNSVDSVGRDV 120

Query: 121 GRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKR-LGIL 180
            R   ++R KR+   L   FVGE+EKG++V+++A KG F + +V+L KML++KK+ +GI+
Sbjct: 121 ERLLNLMRNKRVEAVLGSAFVGEKEKGQVVKDLAEKGRFSRHLVRLVKMLVDKKKDVGII 180

Query: 181 NEVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 233
            +VL EFER+YD++  T+VVLVSS +K++E  +F IAK VQ L+GA+KVKVR+ +    +
Sbjct: 181 RQVLEEFERVYDQMLRTQVVLVSSAKKIEENNMFWIAKRVQTLTGALKVKVRNLVRHNSL 235

[Close]

BLAST of CmaCh06G009800 vs. TrEMBL
Match: K4C182_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 103/227 (45.37%), Postives = 142/227 (62.56%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKN-------HSAHLPHRSPSRRSNSISKPPNFLS 60
           MDTL++SVS+L++P+    S D  H KN        S+  PH +  + ++  SK  +F  
Sbjct: 1   MDTLSTSVSSLKLPNIRRYSADFHHFKNPYTTTTSSSSSSPHFNFPKTTSISSKTNSF-- 60

Query: 61  THKTLNPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFS 120
           THK     PF S         S     H R ++GYAAAL+D      S+  + KDV + S
Sbjct: 61  THKKTTNFPFLSKTPPPKQPFSKHQTAHTRASSGYAAALIDIGNCNNSLEKLDKDVRKLS 120

Query: 121 KVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLS 180
           + LR  ++     DPFVG +EKG +V+EI +KG F K +V + K+L+EK +LGI+ EVL 
Sbjct: 121 RWLRHDQVRVLRTDPFVGNQEKGYVVKEILSKGNFNKHLVGVVKLLVEKNKLGIVGEVLM 180

Query: 181 EFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVR 221
           EFERIYD+LCGT+VVLVSS  KM+++E FGIAK VQ+LSGA +VKV+
Sbjct: 181 EFERIYDQLCGTQVVLVSSEVKMEKDEAFGIAKKVQQLSGAERVKVK 225

[Close]

BLAST of CmaCh06G009800 vs. TrEMBL
Match: M1A9Y1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007007 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 8.7e-39
Identity = 102/224 (45.54%), Postives = 141/224 (62.95%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVPSTLASSRDLLHLKN----HSAHLPHRSPSRRSNSISKPPNFLSTHK 60
           MDTL++SVS+L+V +    S D  H KN     S+  PH +  + ++  +K  +F  THK
Sbjct: 1   MDTLSTSVSSLKVSNLRRYSADFHHFKNPYTTSSSSSPHFNFPKPTSISNKTNSF--THK 60

Query: 61  TLNPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
                PF S         S     H R ++GYAAAL+D +    S+  + KDV R S+ L
Sbjct: 61  KTTNFPFLSKTPPPKQPFSKHQTAHTRASSGYAAALIDIANCNNSLEKLDKDVRRLSRWL 120

Query: 121 RTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFE 180
           R  ++   + DPFVG +EKG +V+EI +KG F K +V + K+L+EK +L I+ EVL EFE
Sbjct: 121 RNDQLRVLMTDPFVGNQEKGYVVKEILSKGNFNKHLVGVVKLLVEKNKLEIVGEVLMEFE 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVR 221
           RIYD+LCGT+VVLVSS  KM++ E+FGIAK VQ LSGA +VKV+
Sbjct: 181 RIYDQLCGTQVVLVSSEVKMEKNEVFGIAKKVQELSGAERVKVK 222

[Close]

BLAST of CmaCh06G009800 vs. TAIR10
Match: AT4G09650.1 (AT4G09650.1 ATP synthase delta-subunit gene)

HSP 1 Score: 75.1 bits (183), Expect = 6.6e-14
Identity = 45/179 (25.14%), Postives = 89/179 (49.72%), Query Frame = 1


Query: 62  PFSSSFSSSSPRRSSSPL------------LHRRPAAGYAAALVDASQTTGSIHSVAKDV 121
           P S   + S P R + P+            +    A+ YA AL D ++   ++     D+
Sbjct: 17  PSSFQIARSLPLRKTFPIRINNGGNAAGARMSATAASSYAMALADVAKRNDTMELTVTDI 76

Query: 122 GRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILN 181
            +  +V    ++  F  +P +  E+K +++ +I      +        +L++  R+ I+ 
Sbjct: 77  EKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSSSLQSHTSNFLNVLVDANRINIVT 136

Query: 182 EVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           E++ EFE +Y++L  T++  V S  K++  +L  IAK VQ+L+GA  V+V++ I+  L+
Sbjct: 137 EIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAKQVQKLTGAKNVRVKTVIDASLV 195

[Close]

BLAST of CmaCh06G009800 vs. TAIR10
Match: AT4G00895.1 (AT4G00895.1 ATPase, F1 complex, OSCP/delta subunit protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 68/205 (33.17%), Postives = 101/205 (49.27%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVPSTLASSRDLLH-LKNHSAHLPHRSPSRRSNSISKP----PNFLSTH 60
           MDTL++SVS+L +PS     +  L  + +      + + S  S ++SKP    P+  S  
Sbjct: 1   MDTLSASVSSLNLPSLPPPPQPPLRSISSRFKSTVNATTSASSTNLSKPTSSSPSSASYS 60

Query: 61  KTLNPLPFSSSFSSSSPRRSSS-------PLLHRRPAAGYAAALVDASQTTGSIHSVAKD 120
           +  NP  F  + S   P+   S       P +H + A+G+AAALV   Q+   +    +D
Sbjct: 61  QNRNP-NFLKAISFHLPQTKPSRVVTPPPPPVHDKAASGFAAALVSVCQSKNCLGRTQED 120

Query: 121 VGRFSKVLRTKRIGGFLNDPFVGEEEKGR--LVREIAAKGGFEKQVVKLTKMLIEKKRLG 180
           V R  + L             VGEE+K    LV ++  +G F K    L KMLI + + G
Sbjct: 121 VRRLMEFL-------------VGEEKKRNKVLVNDVVERGKFGKHFKGLVKMLIARGKSG 180

Query: 181 ILNEVLSEFERIYDELCGTEVVLVS 192
           IL +VL EFERI +EL   ++V VS
Sbjct: 181 ILVDVLMEFERICNELVSKKLVWVS 191

[Close]

BLAST of CmaCh06G009800 vs. NCBI nr
Match: gi|659074899|ref|XP_008437855.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo])

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-88
Identity = 186/232 (80.17%), Postives = 205/232 (88.36%), Query Frame = 1


Query: 1   MDTLTSSV--STLRVPS-TLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MDTLT++   STLRVPS TLASSRD LHLKN +AHLPHRSP R SNSISKPPNFLST KT
Sbjct: 1   MDTLTTTSVSSTLRVPSRTLASSRDFLHLKNPTAHLPHRSPPRTSNSISKPPNFLSTPKT 60

Query: 61  LNP-LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           LNP +PFS+      PRRSSSPLLHRRPA+GYAAALVDASQ+TG+IHSVAKDVGRFSK+L
Sbjct: 61  LNPSIPFST------PRRSSSPLLHRRPASGYAAALVDASQSTGTIHSVAKDVGRFSKLL 120

Query: 121 RTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFE 180
           R KRIG  LNDP VG+EEKGRLV+EIA KGGFE+QVVKLTKMLIEK  L IL EV SEF+
Sbjct: 121 RGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKCNLRILTEVFSEFD 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           RIYDELCGTEVV+VSSN+KM+EEELFGIAKN QRLSGA+KVKVRSF++GGLM
Sbjct: 181 RIYDELCGTEVVMVSSNKKMEEEELFGIAKNAQRLSGAVKVKVRSFVHGGLM 226

[Close]

BLAST of CmaCh06G009800 vs. NCBI nr
Match: gi|449433016|ref|XP_004134294.1| (PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 8.5e-88
Identity = 184/232 (79.31%), Postives = 204/232 (87.93%), Query Frame = 1


Query: 1   MDTLT--SSVSTLRVPS-TLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MDTLT  S  S LRVPS TL SSRD LHLKN +AHLPHRSPSR SNSISKPPNFLST +T
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNP-LPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVL 120
           LNP +PFS+      PRRSSSPLLHRRPA+GYAAAL+DASQ+TG+IHSVAKDVGRFSK+L
Sbjct: 61  LNPSIPFST------PRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLL 120

Query: 121 RTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFE 180
           R KRIG  LNDP VG+EEKGRLV+EIA KGGFE+QVVKLTKMLIEK +L IL EV SEFE
Sbjct: 121 RGKRIGRVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFE 180

Query: 181 RIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 229
           R+YDELCGTEVV+VSS++KM+EEEL GIAKNVQRLSGA+KVKVRSFI+GGLM
Sbjct: 181 RVYDELCGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFIHGGLM 226

[Close]

BLAST of CmaCh06G009800 vs. NCBI nr
Match: gi|720036813|ref|XP_010267478.1| (PREDICTED: ATP synthase delta chain, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 179.1 bits (453), Expect = 9.3e-42
Identity = 109/239 (45.61%), Postives = 154/239 (64.44%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVPSTLASS-RDLLHLKNHSAHLP------HRSPSRRSNSISKPPNFLS 60
           MDTL++SVS+L+ P    ++ R+  H +  S H P      H   + R NS    P+   
Sbjct: 1   MDTLSTSVSSLKAPGLPTTAPRETFHFR--SPHTPFLLPHYHHLSTHRPNSTFNKPSLPF 60

Query: 61  THKTLNPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFS 120
           T K+    PF  S S  S  RS SP++HR+ A+GYAAAL+D ++ +  + +V  DV RFS
Sbjct: 61  TSKSYKS-PFLPS-SQPSSLRSPSPVVHRKAASGYAAALMDRARCSNVLEAVEHDVRRFS 120

Query: 121 KVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLS 180
           ++  ++ +   LNDPFV ++ KG  V+++  KG F+K +  L KM+IEK ++G++NEVL 
Sbjct: 121 RLFHSEHLRAILNDPFVDDKTKGEEVKQVVEKGRFQKHLAVLLKMMIEKNKMGMVNEVLQ 180

Query: 181 EFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLMKFVL 233
           EF+RIYDEL GT +VLVSS RKM+E++LFGIAK VQ LSGAMK+KVR  I+  L    L
Sbjct: 181 EFQRIYDELSGTRIVLVSSARKMEEDQLFGIAKRVQSLSGAMKIKVRHLIDESLSSSAL 235

[Close]

BLAST of CmaCh06G009800 vs. NCBI nr
Match: gi|823208931|ref|XP_012437790.1| (PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii])

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-41
Identity = 111/235 (47.23%), Postives = 152/235 (64.68%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVPSTLASSRDLLH-LK--NHSAHLPHRSPSRRSNSISKPPNFLST--- 60
           MD L+SSVS+   P+   S+   LH LK  N   HLP  SP R     +  P  +ST   
Sbjct: 1   MDPLSSSVSSRLKPTNFNSTPRQLHPLKPLNRPRHLPPPSPQRPLLFSTTKPTTISTSFT 60

Query: 61  HKTLNPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSK 120
           HK L  LP     +S  P  SSS  +HR PA GYAAAL+D +Q+TGS+H V +DV + S+
Sbjct: 61  HKNLTALPIFPHPTSLLP--SSSLHVHRTPATGYAAALLDTTQSTGSLHEVRRDVRKLSR 120

Query: 121 VLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSE 180
           +L+  +I   LNDPF+G++EKG+ ++E+A KG F K +  L K+++EK +LGI++EVL E
Sbjct: 121 LLQNSQIQALLNDPFLGDQEKGKAMKELAKKGKFNKHLFNLLKVMVEKNKLGIVSEVLEE 180

Query: 181 FERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLMK 230
           FER+YDEL GT+ V VSS + + E+ LF IA  VQ LSGA+KVKV++ +   L K
Sbjct: 181 FERVYDELIGTKQVWVSSEKMIGEDMLFKIAMKVQNLSGAVKVKVKNLVIDKLPK 233

[Close]

BLAST of CmaCh06G009800 vs. NCBI nr
Match: gi|703114577|ref|XP_010100695.1| (ATP synthase delta chain [Morus notabilis])

HSP 1 Score: 176.4 bits (446), Expect = 6.0e-41
Identity = 110/244 (45.08%), Postives = 154/244 (63.11%), Query Frame = 1


Query: 1   MDTLTSSVSTLRVP---STLASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKT 60
           MD L+SSVSTL+VP   ST +    L H K         +PS+     S  PN   T  T
Sbjct: 1   MDPLSSSVSTLKVPTLHSTTSRHELLTHFKT--------TPSKNLPYSSLLPNKTPTFTT 60

Query: 61  LNPLPFSSSFSSSSPRRSSS--------PLLHRRPAAGYAAALVDASQTTGSIHSVAKDV 120
            NP    SSFSS+SP RS +        P+ HR PA GYAAAL+D +Q   S+ SV +DV
Sbjct: 61  QNPFT-PSSFSSTSPTRSLTAPSPSPRPPIHHRNPATGYAAALLDVAQANNSVDSVGRDV 120

Query: 121 GRFSKVLRTKRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKR-LGIL 180
            R   ++R KR+   L   FVGE+EKG++V+++A KG F + +V+L KML++KK+ +GI+
Sbjct: 121 ERLLNLMRNKRVEAVLGSAFVGEKEKGQVVKDLAEKGRFSRHLVRLVKMLVDKKKDVGII 180

Query: 181 NEVLSEFERIYDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFINGGLM 233
            +VL EFER+YD++  T+VVLVSS +K++E  +F IAK VQ L+GA+KVKVR+ +    +
Sbjct: 181 RQVLEEFERVYDQMLRTQVVLVSSAKKIEENNMFWIAKRVQTLTGALKVKVRNLVRHNSL 235

The following BLAST results are available for this feature:

BLAST of CmaCh06G009800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPD_TOBAC	6.5e-19	32.64	ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1	[more]
ATPD_SPIOL	4.6e-17	29.80	ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2	[more]
ATPD_PEA	4.6e-17	28.30	ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1	[more]
ATPD_SORBI	1.6e-14	29.17	ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1	[more]
ATPD_ARATH	1.2e-12	25.14	ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana GN=ATPD PE=1 S...	[more]

BLAST of CmaCh06G009800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L326_CUCSA	6.0e-88	79.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119340 PE=4 SV=1	[more]
A0A0D2U272_GOSRA	3.2e-41	47.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G127400 PE=4 SV=1	[more]
W9RLH4_9ROSA	4.2e-41	45.08	ATP synthase delta chain OS=Morus notabilis GN=L484_023464 PE=4 SV=1	[more]
K4C182_SOLLC	1.8e-39	45.37	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1A9Y1_SOLTU	8.7e-39	45.54	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007007 PE=4 SV=1	[more]

BLAST of CmaCh06G009800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G09650.1	6.6e-14	25.14	ATP synthase delta-subunit gene	[more]
AT4G00895.1	1.8e-11	33.17	ATPase, F1 complex, OSCP/delta subunit protein	[more]

BLAST of CmaCh06G009800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074899\|ref\|XP_008437855.1\|	1.0e-88	80.17	PREDICTED: ATP synthase delta chain, chloroplastic [Cucumis melo]	[more]
gi\|449433016\|ref\|XP_004134294.1\|	8.5e-88	79.31	PREDICTED: ATP synthase delta chain, chloroplastic-like [Cucumis sativus]	[more]
gi\|720036813\|ref\|XP_010267478.1\|	9.3e-42	45.61	PREDICTED: ATP synthase delta chain, chloroplastic [Nelumbo nucifera]	[more]
gi\|823208931\|ref\|XP_012437790.1\|	4.6e-41	47.23	PREDICTED: ATP synthase subunit delta, chloroplastic [Gossypium raimondii]	[more]
gi\|703114577\|ref\|XP_010100695.1\|	6.0e-41	45.08	ATP synthase delta chain [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000711	ATPase_OSCP/dsu
IPR026015	ATP_synth_OSCP/delta_N_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0045259	proton-transporting ATP synthase complex
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009800.1	CmaCh06G009800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PRINTS	PR00125	ATPASEDELTA	coord: 153..164 score: 2.3E-5coord: 164..178 score: 2.3E-5coord: 84..103 score: 2.
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 61..242 score: 3.8
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 87..224 score: 3.0
IPR000711	ATPase, OSCP/delta subunit	TIGRFAMs	TIGR01145	TIGR01145	coord: 85..228 score: 1.7
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	GENE3D	G3DSA:1.10.520.20		coord: 87..181 score: 3.8
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	unknown	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 86..182 score: 4.84
None	No IPR available	PANTHER	PTHR11910:SF8	SUBFAMILY NOT NAMED	coord: 61..242 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G009800	Cucsa.259470	Cucumber (Gy14) v1	cgycmaB0725
CmaCh06G009800	ClCG05G000620	Watermelon (Charleston Gray)	cmawcgB742
CmaCh06G009800	CSPI03G07720	Wild cucumber (PI 183967)	cmacpiB843
CmaCh06G009800	CmoCh06G010250	Cucurbita moschata (Rifu)	cmacmoB832
CmaCh06G009800	Lsi05G021520	Bottle gourd (USVL1VR-Ls)	cmalsiB770
CmaCh06G009800	Cp4.1LG08g00860	Cucurbita pepo (Zucchini)	cmacpeB848
CmaCh06G009800	CsaV3_3G007840	Cucumber (Chinese Long) v3	cmacucB0980
CmaCh06G009800	Cla97C05G080690	Watermelon (97103) v2	cmawmbB862
CmaCh06G009800	CsGy3G007850	Cucumber (Gy14) v2	cgybcmaB443
CmaCh06G009800	Carg20909	Silver-seed gourd	carcmaB1376

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G009800	Watermelon (97103) v2	cmawmbB857
CmaCh06G009800	Wax gourd	cmawgoB1011
CmaCh06G009800	Cucurbita maxima (Rimu)	cmacmaB023
CmaCh06G009800	Cucurbita maxima (Rimu)	cmacmaB281
CmaCh06G009800	Cucumber (Gy14) v1	cgycmaB0728
CmaCh06G009800	Cucurbita moschata (Rifu)	cmacmoB795
CmaCh06G009800	Cucurbita moschata (Rifu)	cmacmoB799
CmaCh06G009800	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G009800	Wild cucumber (PI 183967)	cmacpiB830
CmaCh06G009800	Cucumber (Chinese Long) v2	cmacuB818
CmaCh06G009800	Cucumber (Chinese Long) v2	cmacuB830
CmaCh06G009800	Melon (DHL92) v3.5.1	cmameB766
CmaCh06G009800	Melon (DHL92) v3.5.1	cmameB771
CmaCh06G009800	Watermelon (Charleston Gray)	cmawcgB738
CmaCh06G009800	Watermelon (97103) v1	cmawmB803
CmaCh06G009800	Watermelon (97103) v1	cmawmB799
CmaCh06G009800	Cucurbita pepo (Zucchini)	cmacpeB834
CmaCh06G009800	Cucurbita pepo (Zucchini)	cmacpeB839
CmaCh06G009800	Bottle gourd (USVL1VR-Ls)	cmalsiB760
CmaCh06G009800	Cucumber (Gy14) v2	cgybcmaB430
CmaCh06G009800	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G009800	Melon (DHL92) v3.6.1	cmamedB873
CmaCh06G009800	Silver-seed gourd	carcmaB0163
CmaCh06G009800	Silver-seed gourd	carcmaB0176
CmaCh06G009800	Silver-seed gourd	carcmaB0177
CmaCh06G009800	Cucumber (Chinese Long) v3	cmacucB0965