CmaCh03G013980 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G013980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nuclear receptor coactivator 6, putative
Location	Cma_Chr03 : 8813625 .. 8814059 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCAAGATTCAATCCCCATTCTTCCAAATCTCTCCCTCTCTCATTCTCTTCTTTCTCTTGATCTCCTCCTCCTCCTCCGCAAACCTCCTTCCCTACAGATCAGACGTACAACTCCGCCGTCACCGGACCACCCTCCACGGCGGCGCACCCACCACACCATTCTTGCTAAACTCACAGCGAGCAGTAGATCAGTACAAAGCCAACAAATTACAAATGGCGATAAAAAACAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGCTTTCTCCGCGATGCTCCCAAAGGGTTTTGTCCCTCCCTCTGGCTCGTCCCCTTGCCATAACCAAAGCCCTCAATCATCATCCCCCGCCTTTTACTGTCATCTCTCTGCTGCCACCAACCGCCCTTGA

mRNA sequence

ATGGGTTTCAAGATTCAATCCCCATTCTTCCAAATCTCTCCCTCTCTCATTCTCTTCTTTCTCTTGATCTCCTCCTCCTCCTCCGCAAACCTCCTTCCCTACAGATCAGACGTACAACTCCGCCGTCACCGGACCACCCTCCACGGCGGCGCACCCACCACACCATTCTTGCTAAACTCACAGCGAGCAGTAGATCAGTACAAAGCCAACAAATTACAAATGGCGATAAAAAACAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGCTTTCTCCGCGATGCTCCCAAAGGGTTTTGTCCCTCCCTCTGGCTCGTCCCCTTGCCATAACCAAAGCCCTCAATCATCATCCCCCGCCTTTTACTGTCATCTCTCTGCTGCCACCAACCGCCCTTGA

Coding sequence (CDS)

ATGGGTTTCAAGATTCAATCCCCATTCTTCCAAATCTCTCCCTCTCTCATTCTCTTCTTTCTCTTGATCTCCTCCTCCTCCTCCGCAAACCTCCTTCCCTACAGATCAGACGTACAACTCCGCCGTCACCGGACCACCCTCCACGGCGGCGCACCCACCACACCATTCTTGCTAAACTCACAGCGAGCAGTAGATCAGTACAAAGCCAACAAATTACAAATGGCGATAAAAAACAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGCTTTCTCCGCGATGCTCCCAAAGGGTTTTGTCCCTCCCTCTGGCTCGTCCCCTTGCCATAACCAAAGCCCTCAATCATCATCCCCCGCCTTTTACTGTCATCTCTCTGCTGCCACCAACCGCCCTTGA

Protein sequence

MGFKIQSPFFQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAPTTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHLSAATNRP

Homology

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BLAST of CmaCh03G013980 vs. TrEMBL
Match: A0A0A0KIK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.0e-23
Identity = 82/160 (51.25%), Postives = 97/160 (60.62%), Query Frame = 1


Query: 1   MGFKIQSPF--------FQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAP 60
           MGFKI S F        FQIS SLILFFLL  ++SS   LP      +R   T +HG A 
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60

Query: 61  TTPFLLNSQRAVD-------QYKANKLQMAIK-NKSKKK--KKKTTA-----RFESNGNN 120
           TT      +R VD       +Y++NKL+M IK NK  KK  K+K        +  ++ N 
Sbjct: 61  TT-----LRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120

Query: 121 NNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 138
           N+KG AFSAMLPKGFVPPSGSSPCHN+ PQSSS AFYCHL
Sbjct: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

[Close]

BLAST of CmaCh03G013980 vs. TrEMBL
Match: A0A162B887_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003919 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.2e-08
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 53  TTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGF 112
           TTP+ L  Q    Q++ +K    I++K+KK ++KT     S+ NNN   RAF+ MLPKGF
Sbjct: 821 TTPYFLKDQEP-QQWRRHK--NLIESKNKKTRRKT----RSSKNNNIDTRAFTTMLPKGF 880

Query: 113 VPPSGSSPCHNQSPQSSSPAFYCHLSA 140
           +PPSGSSPCHN  P S +  F+C LS+
Sbjct: 881 IPPSGSSPCHNDFPNSIT--FFCELSS 898

[Close]

BLAST of CmaCh03G013980 vs. TrEMBL
Match: G7IPW5_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g019510 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-07
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = 1


Query: 18  LFFLLI---SSSSSANLL----------PYRSDVQLRRHRTTLHGGAPTTPFLLNSQRAV 77
           LFFL+I   +SSSS N            P  ++ +L  +    +      P  L+ Q  +
Sbjct: 18  LFFLMIPHTASSSSPNSSNNNQEIQSQNPSSTNTELSHYHQVFYLKNADPPMFLSIQERI 77

Query: 78  DQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSPCHNQ 137
            + K N+     KNK+  K+KK     +    N    R FS MLPKGFVPPSGSSPCHN 
Sbjct: 78  KKRKMNRN----KNKNMMKQKKHRKHKKKIVKNMVNSRPFSVMLPKGFVPPSGSSPCHND 137

Query: 138 SPQSSSPAFYCHLSA 140
            P S S  F+C+L++
Sbjct: 138 QPNSVS--FHCYLTS 146

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BLAST of CmaCh03G013980 vs. TrEMBL
Match: V7BTK0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G164500g PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1


Query: 15  SLILFFLLI----SSSSSANLLPYRSDVQLRRHRTTLHGGAPT-TP-------FLLNSQR 74
           +L + FLL     SSSSS++   Y + V ++    +     PT TP       +L N+  
Sbjct: 15  TLFILFLLSYTPSSSSSSSSSSHYSTAVDIQHQNPS-----PTITPPQNYQIFYLKNTPY 74

Query: 75  AVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSPCH 134
                K  + +     ++K   +        N + +   R FS MLPKGFVPPSGSSPCH
Sbjct: 75  TTPFTKQERFKKRRTRRNKNMMRHRKKMVVKNMHQSRDSRPFSVMLPKGFVPPSGSSPCH 134

Query: 135 NQSPQSSSPAFYCHLSA 140
           N  P S S +F+CHL+A
Sbjct: 135 NDQPNSVSSSFHCHLTA 146

[Close]

BLAST of CmaCh03G013980 vs. TrEMBL
Match: K7M133_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G218000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 70  NKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSS 129
           +K  M +K++ K  K     R  S        RAFS MLPKGFVPPSGSSPCHN  P S 
Sbjct: 86  SKNMMMMKHRKKMVKNLQQTRDSS--------RAFSVMLPKGFVPPSGSSPCHNDQPNSV 145

Query: 130 SPAFYCHLSAAT 142
           S +F+CHLS  T
Sbjct: 146 S-SFHCHLSTTT 148

[Close]

BLAST of CmaCh03G013980 vs. TAIR10
Match: AT4G18335.1 (AT4G18335.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 51/150 (34.00%), Postives = 73/150 (48.67%), Query Frame = 1


Query: 10  FQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAP---------TTPFLLNS 69
           F +S  L L FL+  SSSS+N     S  Q  +    L+G            TTPF+LN 
Sbjct: 15  FIVSLILTLVFLISPSSSSSNQETRVSSTQ--KTEAYLNGYESPHQLVYIKKTTPFILNQ 74

Query: 70  QRAVDQYKANKL--------QMAIKNKSKKKKK----KTTARFESNGNNNNKGRAFSAML 129
           +   D ++  +         +  ++++     +    K  A+  +  N   +   FS ML
Sbjct: 75  RLQRDNHRRRRYNHQYYYYYRHTLRHRRGLHHRAGYFKMMAKKNNGLNRPVRQDTFSVML 134

Query: 130 PKGFVPPSGSSPCHNQSPQSSSPAFYCHLS 139
           PKGFVPPSGSSPCHNQ+P S++  F C LS
Sbjct: 135 PKGFVPPSGSSPCHNQNPNSATTLF-CDLS 161

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: gi|700194189|gb|KGN49393.1| (hypothetical protein Csa_6G523350 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 5.7e-23
Identity = 82/160 (51.25%), Postives = 97/160 (60.62%), Query Frame = 1


Query: 1   MGFKIQSPF--------FQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAP 60
           MGFKI S F        FQIS SLILFFLL  ++SS   LP      +R   T +HG A 
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60

Query: 61  TTPFLLNSQRAVD-------QYKANKLQMAIK-NKSKKK--KKKTTA-----RFESNGNN 120
           TT      +R VD       +Y++NKL+M IK NK  KK  K+K        +  ++ N 
Sbjct: 61  TT-----LRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120

Query: 121 NNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 138
           N+KG AFSAMLPKGFVPPSGSSPCHN+ PQSSS AFYCHL
Sbjct: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: gi|1021053485|gb|KZN11263.1| (hypothetical protein DCAR_003919 [Daucus carota subsp. sativus])

HSP 1 Score: 65.5 bits (158), Expect = 8.9e-08
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 53  TTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGF 112
           TTP+ L  Q    Q++ +K    I++K+KK ++KT     S+ NNN   RAF+ MLPKGF
Sbjct: 821 TTPYFLKDQEP-QQWRRHK--NLIESKNKKTRRKT----RSSKNNNIDTRAFTTMLPKGF 880

Query: 113 VPPSGSSPCHNQSPQSSSPAFYCHLSA 140
           +PPSGSSPCHN  P S +  F+C LS+
Sbjct: 881 IPPSGSSPCHNDFPNSIT--FFCELSS 898

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: gi|697180758|ref|XP_009599358.1| (PREDICTED: uncharacterized protein LOC104095024 [Nicotiana tomentosiformis])

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 1


Query: 16  LILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAPTTPFLLNSQRAVDQYKANKLQMA 75
           L+ FFLL SSS+        S +   +  +       + PF    ++A +      LQ++
Sbjct: 13  LLSFFLLSSSSNEFQPRNLGSPLDNNKAPSPYDHIKNSEPFNFLKKQAGE---GEGLQLS 72

Query: 76  IKNKSKKKKKKTTARFESNGNNNNK---GRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPA 135
            K+K KKKKK         GN N++    R+FSAMLPKGFVPPSG+SPCHN  P  +S  
Sbjct: 73  TKDKRKKKKKARLNLKRKRGNKNSEYYSSRSFSAMLPKGFVPPSGNSPCHNTYP--NSVT 132

Query: 136 FYCHLS 139
           F+C LS
Sbjct: 133 FFCDLS 133

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: gi|502079528|ref|XP_004486288.1| (PREDICTED: uncharacterized protein LOC101492680 [Cicer arietinum])

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 53  TTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGF 112
           +TP  L  Q  V   + N+      NK+ K++K+   R +   N     R FS MLPKGF
Sbjct: 64  STPMFLRKQERVKNRRMNR------NKNMKQRKQRKQRKKMVKNMMQSSRPFSVMLPKGF 123

Query: 113 VPPSGSSPCHNQSPQSSSPAFYCHLS 139
           VPPSGSSPCHN  P S S  F+CHL+
Sbjct: 124 VPPSGSSPCHNNQPNSVS--FHCHLT 141

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: gi|698511100|ref|XP_009800677.1| (PREDICTED: uncharacterized protein LOC104246562 [Nicotiana sylvestris])

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 54/139 (38.85%), Postives = 75/139 (53.96%), Query Frame = 1


Query: 16  LILFFLLISSSSSANLLPYRSDVQLRRHRTTL--HGGAPTT-----------PFLLNSQR 75
           L+L F L+SSSSS++     +  Q R   ++L  +  AP+            PF    ++
Sbjct: 12  LLLSFFLLSSSSSSSSSSSSNKFQPRNLGSSLSDNNKAPSPYDQYDHIKNSEPFNFLKKQ 71

Query: 76  AVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNK---GRAFSAMLPKGFVPPSGSS 135
           A +      LQ++ K+K KKKKK          N N++    R+FSAMLPKGFVPPSG+S
Sbjct: 72  AGE---GEGLQLSTKDKRKKKKKARLNMKRKRDNKNSEYYSSRSFSAMLPKGFVPPSGNS 131

Query: 136 PCHNQSPQSSSPAFYCHLS 139
           PCHN  P  +S  F+C LS
Sbjct: 132 PCHNTYP--NSVTFFCDLS 145

The following BLAST results are available for this feature:

BLAST of CmaCh03G013980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G013980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIK1_CUCSA	4.0e-23	51.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523350 PE=4 SV=1	[more]
A0A162B887_DAUCA	6.2e-08	48.28	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003919 PE=4 SV=1	[more]
G7IPW5_MEDTR	8.9e-07	37.04	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g019510 PE=4 SV=1	[more]
V7BTK0_PHAVU	2.6e-06	35.04	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G164500g PE=4 SV=1	[more]
K7M133_SOYBN	2.6e-06	51.39	Uncharacterized protein OS=Glycine max GN=GLYMA_13G218000 PE=4 SV=1	[more]

BLAST of CmaCh03G013980 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18335.1	3.6e-07	34.00	unknown protein	[more]

BLAST of CmaCh03G013980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194189\|gb\|KGN49393.1\|	5.7e-23	51.25	hypothetical protein Csa_6G523350 [Cucumis sativus]	[more]
gi\|1021053485\|gb\|KZN11263.1\|	8.9e-08	48.28	hypothetical protein DCAR_003919 [Daucus carota subsp. sativus]	[more]
gi\|697180758\|ref\|XP_009599358.1\|	3.4e-07	39.68	PREDICTED: uncharacterized protein LOC104095024 [Nicotiana tomentosiformis]	[more]
gi\|502079528\|ref\|XP_004486288.1\|	4.4e-07	45.35	PREDICTED: uncharacterized protein LOC101492680 [Cicer arietinum]	[more]
gi\|698511100\|ref\|XP_009800677.1\|	4.4e-07	38.85	PREDICTED: uncharacterized protein LOC104246562 [Nicotiana sylvestris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G013980.1	CmaCh03G013980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G013980	Cucsa.047710	Cucumber (Gy14) v1	cgycmaB0045
CmaCh03G013980	Cla009770	Watermelon (97103) v1	cmawmB628
CmaCh03G013980	Csa6G523350	Cucumber (Chinese Long) v2	cmacuB678
CmaCh03G013980	MELO3C007136	Melon (DHL92) v3.5.1	cmameB618
CmaCh03G013980	ClCG01G024590	Watermelon (Charleston Gray)	cmawcgB576
CmaCh03G013980	CSPI06G36250	Wild cucumber (PI 183967)	cmacpiB686
CmaCh03G013980	CmoCh07G001100	Cucurbita moschata (Rifu)	cmacmoB672
CmaCh03G013980	Lsi01G001510	Bottle gourd (USVL1VR-Ls)	cmalsiB602
CmaCh03G013980	Cp4.1LG10g05970	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G013980	MELO3C007136.2	Melon (DHL92) v3.6.1	cmamedB704
CmaCh03G013980	CsaV3_6G051710	Cucumber (Chinese Long) v3	cmacucB0807
CmaCh03G013980	Cla97C01G024540	Watermelon (97103) v2	cmawmbB667
CmaCh03G013980	Carg19268	Silver-seed gourd	carcmaB0413
CmaCh03G013980	Carg15010	Silver-seed gourd	carcmaB1023

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G013980	CmaCh07G001100	Cucurbita maxima (Rimu)	cmacmaB528

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G013980	Melon (DHL92) v3.6.1	cmamedB677
CmaCh03G013980	Silver-seed gourd	carcmaB0587
CmaCh03G013980	Silver-seed gourd	carcmaB1111
CmaCh03G013980	Cucumber (Chinese Long) v3	cmacucB0776
CmaCh03G013980	Watermelon (97103) v2	cmawmbB682
CmaCh03G013980	Wax gourd	cmawgoB0789
CmaCh03G013980	Wax gourd	cmawgoB0808
CmaCh03G013980	Cucurbita maxima (Rimu)	cmacmaB232
CmaCh03G013980	Cucurbita maxima (Rimu)	cmacmaB397
CmaCh03G013980	Cucurbita moschata (Rifu)	cmacmoB638
CmaCh03G013980	Cucurbita moschata (Rifu)	cmacmoB644
CmaCh03G013980	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G013980	Wild cucumber (PI 183967)	cmacpiB655
CmaCh03G013980	Cucumber (Chinese Long) v2	cmacuB650
CmaCh03G013980	Melon (DHL92) v3.5.1	cmameB592
CmaCh03G013980	Watermelon (Charleston Gray)	cmawcgB583
CmaCh03G013980	Watermelon (97103) v1	cmawmB622
CmaCh03G013980	Cucurbita pepo (Zucchini)	cmacpeB653
CmaCh03G013980	Cucurbita pepo (Zucchini)	cmacpeB667
CmaCh03G013980	Cucurbita pepo (Zucchini)	cmacpeB675
CmaCh03G013980	Bottle gourd (USVL1VR-Ls)	cmalsiB606
CmaCh03G013980	Cucumber (Gy14) v2	cgybcmaB127
CmaCh03G013980	Cucumber (Gy14) v2	cgybcmaB830