Carg15010 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15010
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear receptor coactivator 6, putative
Location	Cucurbita_argyrosperma_scaffold_071 : 600358 .. 600723 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCAAGATTCAACCCTCCCCATCACCAAATTACCTCTACTACCTCTCAATCTCTCTCTCACTCATCCTCTTCTTTCTCCTAATTTCCTCCTCATCCGCTCAACCCCTTCCCCTCCGCCGCCCCAACCTCGCCGCTCATCACCGGCATCGGACCACCCTCCACGTCGGCGCACCCACCACCACATTCACAGCCAAGAAATTACAAATGGAGACCAACAAGAAGAAGAAAAAGAATAAGGCCACGGCTTTTTCTGCGATGCTTCCGAAGGGATTTGTCCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAATCCTGAATTTGTTGCCTTTTATTGCCATCTTTCTGCAACCAATCCTTGA

mRNA sequence

ATGGGTTTCAAGATTCAACCCTCCCCATCACCAAATTACCTCTACTACCTCTCAATCTCTCTCTCACTCATCCTCTTCTTTCTCCTAATTTCCTCCTCATCCGCTCAACCCCTTCCCCTCCGCCGCCCCAACCTCGCCGCTCATCACCGGCATCGGACCACCCTCCACGTCGGCGCACCCACCACCACATTCACAGCCAAGAAATTACAAATGGAGACCAACAAGAAGAAGAAAAAGAATAAGGCCACGGCTTTTTCTGCGATGCTTCCGAAGGGATTTGTCCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAATCCTGAATTTGTTGCCTTTTATTGCCATCTTTCTGCAACCAATCCTTGA

Coding sequence (CDS)

ATGGGTTTCAAGATTCAACCCTCCCCATCACCAAATTACCTCTACTACCTCTCAATCTCTCTCTCACTCATCCTCTTCTTTCTCCTAATTTCCTCCTCATCCGCTCAACCCCTTCCCCTCCGCCGCCCCAACCTCGCCGCTCATCACCGGCATCGGACCACCCTCCACGTCGGCGCACCCACCACCACATTCACAGCCAAGAAATTACAAATGGAGACCAACAAGAAGAAGAAAAAGAATAAGGCCACGGCTTTTTCTGCGATGCTTCCGAAGGGATTTGTCCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAATCCTGAATTTGTTGCCTTTTATTGCCATCTTTCTGCAACCAATCCTTGA

Protein sequence

MGFKIQPSPSPNYLYYLSISLSLILFFLLISSSSAQPLPLRRPNLAAHHRHRTTLHVGAPTTTFTAKKLQMETNKKKKKNKATAFSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP

Homology

[Close]

BLAST of Carg15010 vs. NCBI nr
Match: XP_010655811.1 (PREDICTED: uncharacterized protein LOC104880561 [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 6.5e-08
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP 122
           FSAMLPKGFVPPSGSSPCHN+ P  +AFYC LS+  P
Sbjct: 88  FSAMLPKGFVPPSGSSPCHNDYPNSIAFYCDLSSQKP 124

[Close]

BLAST of Carg15010 vs. NCBI nr
Match: XP_004486288.1 (PREDICTED: uncharacterized protein LOC101492680 [Cicer arietinum] >XP_004486289.1 PREDICTED: uncharacterized protein LOC101493016 [Cicer arietinum])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP 122
           FS MLPKGFVPPSGSSPCHN  P  V+F+CHL+ T P
Sbjct: 109 FSVMLPKGFVPPSGSSPCHNNQPNSVSFHCHLTNTEP 145

[Close]

BLAST of Carg15010 vs. NCBI nr
Match: XP_010110979.1 (uncharacterized protein LOC21404523 [Morus notabilis] >EXC29365.1 hypothetical protein L484_021673 [Morus notabilis])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP 122
           FS MLPKGFVPPSGSSPCHNENP  V F+C L ++ P
Sbjct: 108 FSGMLPKGFVPPSGSSPCHNENPNSVVFFCDLGSSKP 144

[Close]

BLAST of Carg15010 vs. NCBI nr
Match: XP_003593932.1 (uncharacterized protein LOC11441311 [Medicago truncatula] >AES64183.1 transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP 122
           FS MLPKGFVPPSGSSPCHN+ P  V+F+C+L++T P
Sbjct: 113 FSVMLPKGFVPPSGSSPCHNDQPNSVSFHCYLTSTEP 149

[Close]

BLAST of Carg15010 vs. NCBI nr
Match: KGN49393.1 (hypothetical protein Csa_6G523350 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 84  AFSAMLPKGFVPPSGSSPCHNENPE--FVAFYCHL 117
           AFSAMLPKGFVPPSGSSPCHNE+P+   +AFYCHL
Sbjct: 121 AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

[Close]

BLAST of Carg15010 vs. TAIR10
Match: AT4G18335.1 (unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-08
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENP-EFVAFYCHLS 118
           FS MLPKGFVPPSGSSPCHN+NP      +C LS
Sbjct: 128 FSVMLPKGFVPPSGSSPCHNQNPNSATTLFCDLS 161

[Close]

BLAST of Carg15010 vs. TrEMBL
Match: tr|A0A1S2XAH2|A0A1S2XAH2_CICAR (uncharacterized protein LOC101492680 OS=Cicer arietinum OX=3827 GN=LOC101492680 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP 122
           FS MLPKGFVPPSGSSPCHN  P  V+F+CHL+ T P
Sbjct: 109 FSVMLPKGFVPPSGSSPCHNNQPNSVSFHCHLTNTEP 145

[Close]

BLAST of Carg15010 vs. TrEMBL
Match: tr|W9SH83|W9SH83_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021673 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP 122
           FS MLPKGFVPPSGSSPCHNENP  V F+C L ++ P
Sbjct: 108 FSGMLPKGFVPPSGSSPCHNENPNSVVFFCDLGSSKP 144

[Close]

BLAST of Carg15010 vs. TrEMBL
Match: tr|G7IPW5|G7IPW5_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11441311 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-08
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 85  FSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLSATNP 122
           FS MLPKGFVPPSGSSPCHN+ P  V+F+C+L++T P
Sbjct: 113 FSVMLPKGFVPPSGSSPCHNDQPNSVSFHCYLTSTEP 149

[Close]

BLAST of Carg15010 vs. TrEMBL
Match: tr|A0A0A0KIK1|A0A0A0KIK1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 84  AFSAMLPKGFVPPSGSSPCHNENPE--FVAFYCHL 117
           AFSAMLPKGFVPPSGSSPCHNE+P+   +AFYCHL
Sbjct: 121 AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

[Close]

BLAST of Carg15010 vs. TrEMBL
Match: tr|A0A151R872|A0A151R872_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_039976 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 84  AFSAMLPKGFVPPSGSSPCHNENPEFV-AFYCHLSATNP 122
           +FSAMLPKGFVPPSGSSPCHN+ P  + +F+CHLS T P
Sbjct: 82  SFSAMLPKGFVPPSGSSPCHNDQPNSLSSFHCHLSTTQP 120

The following BLAST results are available for this feature:

BLAST of Carg15010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010655811.1	6.5e-08	75.68	PREDICTED: uncharacterized protein LOC104880561 [Vitis vinifera]	[more]
XP_004486288.1	1.1e-07	72.97	PREDICTED: uncharacterized protein LOC101492680 [Cicer arietinum] >XP_004486289....	[more]
XP_010110979.1	1.1e-07	72.97	uncharacterized protein LOC21404523 [Morus notabilis] >EXC29365.1 hypothetical p...	[more]
XP_003593932.1	1.5e-07	70.27	uncharacterized protein LOC11441311 [Medicago truncatula] >AES64183.1 transmembr...	[more]
KGN49393.1	1.9e-07	82.86	hypothetical protein Csa_6G523350 [Cucumis sativus]	[more]

BLAST of Carg15010 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18335.1	6.1e-08	70.59	unknown protein	[more]

BLAST of Carg15010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S2XAH2\|A0A1S2XAH2_CICAR	7.3e-08	72.97	uncharacterized protein LOC101492680 OS=Cicer arietinum OX=3827 GN=LOC101492680 ...	[more]
tr\|W9SH83\|W9SH83_9ROSA	7.3e-08	72.97	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021673 PE=4 SV=1	[more]
tr\|G7IPW5\|G7IPW5_MEDTR	9.6e-08	70.27	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11441311 PE=4 ...	[more]
tr\|A0A0A0KIK1\|A0A0A0KIK1_CUCSA	1.3e-07	82.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1	[more]
tr\|A0A151R872\|A0A151R872_CAJCA	1.3e-07	71.79	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_039976 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15010-RA	Carg15010-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15010	Cla009770	Watermelon (97103) v1	carwmB0730
Carg15010	Csa6G523350	Cucumber (Chinese Long) v2	carcuB0748
Carg15010	MELO3C007136	Melon (DHL92) v3.5.1	carmeB0725
Carg15010	ClCG01G024590	Watermelon (Charleston Gray)	carwcgB0707
Carg15010	CSPI06G36250	Wild cucumber (PI 183967)	carcpiB0764
Carg15010	Cucsa.047710	Cucumber (Gy14) v1	carcgyB0822
Carg15010	CmaCh07G001100	Cucurbita maxima (Rimu)	carcmaB1024
Carg15010	CmaCh03G013980	Cucurbita maxima (Rimu)	carcmaB1023
Carg15010	CmoCh07G001100	Cucurbita moschata (Rifu)	carcmoB0996
Carg15010	Lsi01G001510	Bottle gourd (USVL1VR-Ls)	carlsiB669
Carg15010	Cp4.1LG19g06190	Cucurbita pepo (Zucchini)	carcpeB1029
Carg15010	Cp4.1LG10g05970	Cucurbita pepo (Zucchini)	carcpeB1028
Carg15010	MELO3C007136.2	Melon (DHL92) v3.6.1	carmedB0736
Carg15010	CsaV3_6G051710	Cucumber (Chinese Long) v3	carcucB0767
Carg15010	Cla97C01G024540	Watermelon (97103) v2	carwmbB0764

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15010	Carg19268	Silver-seed gourd	carcarB328

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15010	Silver-seed gourd	carcarB437
Carg15010	Cucumber (Gy14) v2	carcgybB0726
Carg15010	Cucurbita maxima (Rimu)	carcmaB1021
Carg15010	Cucurbita maxima (Rimu)	carcmaB1022
Carg15010	Cucurbita moschata (Rifu)	carcmoB0993
Carg15010	Cucurbita moschata (Rifu)	carcmoB0994
Carg15010	Cucurbita moschata (Rifu)	carcmoB0995
Carg15010	Cucurbita pepo (Zucchini)	carcpeB1027
Carg15010	Cucurbita pepo (Zucchini)	carcpeB1030
Carg15010	Bottle gourd (USVL1VR-Ls)	carlsiB670
Carg15010	Melon (DHL92) v3.5.1	carmeB0724
Carg15010	Watermelon (Charleston Gray)	carwcgB0708
Carg15010	Watermelon (97103) v1	carwmB0729
Carg15010	Watermelon (97103) v2	carwmbB0765
Carg15010	Wax gourd	carwgoB0863
Carg15010	Wax gourd	carwgoB0864