CmoCh07G001100 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G001100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNuclear receptor coactivator 6, putative
LocationCmo_Chr07 : 622305 .. 622670 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCAAGATTCAACCCTCCTCATCACCAAATAACCTCTACTACCGCTCAATCTCTCTCTCTCTCATCCTCTTATTTCTCCTAATCTCCTTCTCATCCGCTAAACCCCTTCTCCTCCGCCGCCCCAACCTCGCCGCTCATCACCGGTATCGGACCACCCTCCACGTCGGCGCACCCACCACCACATTCACAGCCAAGAAATTACAAATGGAGACCAACAAGAAGAAGAAAAAGAATAAGGCCACGGCTTTTTCTGCGATGCTTCCGAAGGGATTTGTCCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAATCCTGAATTTGTTGCCTTTTATTGCCATCTTTCTGCAACCAATCCTTGA

mRNA sequence

ATGGGTTTCAAGATTCAACCCTCCTCATCACCAAATAACCTCTACTACCGCTCAATCTCTCTCTCTCTCATCCTCTTATTTCTCCTAATCTCCTTCTCATCCGCTAAACCCCTTCTCCTCCGCCGCCCCAACCTCGCCGCTCATCACCGGTATCGGACCACCCTCCACGTCGGCGCACCCACCACCACATTCACAGCCAAGAAATTACAAATGGAGACCAACAAGAAGAAGAAAAAGAATAAGGCCACGGCTTTTTCTGCGATGCTTCCGAAGGGATTTGTCCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAATCCTGAATTTGTTGCCTTTTATTGCCATCTTTCTGCAACCAATCCTTGA

Coding sequence (CDS)

ATGGGTTTCAAGATTCAACCCTCCTCATCACCAAATAACCTCTACTACCGCTCAATCTCTCTCTCTCTCATCCTCTTATTTCTCCTAATCTCCTTCTCATCCGCTAAACCCCTTCTCCTCCGCCGCCCCAACCTCGCCGCTCATCACCGGTATCGGACCACCCTCCACGTCGGCGCACCCACCACCACATTCACAGCCAAGAAATTACAAATGGAGACCAACAAGAAGAAGAAAAAGAATAAGGCCACGGCTTTTTCTGCGATGCTTCCGAAGGGATTTGTCCCTCCCTCTGGTTCGTCTCCTTGCCATAACGAAAATCCTGAATTTGTTGCCTTTTATTGCCATCTTTCTGCAACCAATCCTTGA
Homology
[Close]
BLAST of CmoCh07G001100 vs. TrEMBL
Match: A0A0A0KIK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 71/158 (44.94%), Postives = 87/158 (55.06%), Query Frame = 1 

Query: 1   MGFKIQPS-SSPNNLYYRSISLSLILLFLLI-SFSSAKPLLLRRPNLAAHHRYRTTLHVG 60
           MGFKI  S SSPN L +  ISLSLIL FLL  + SS KPL    P+   + R+RTT+  G
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPS---NVRHRTTVVHG 60

Query: 61  APTTT--------------FTAKKLQME------------------------TNKKKKKN 117
           +  TT              + + KL+ME                        +N K K +
Sbjct: 61  SAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKND 120

[Close]
BLAST of CmoCh07G001100 vs. TrEMBL
Match: M1DF05_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037562 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1 

Query: 58  GAPTTTFTAKKLQMETNKKKKK---NKATAFSAMLPKGFVPPSGSSPCHNENPEFVAFYC 117
           G  TTT T  K++  T K K +   N+   ++AMLPKG+VPPSGSSPCHN  P  V F+C
Sbjct: 60  GLMTTTNTKMKMKTRTLKLKNRGNWNRKRTYTAMLPKGYVPPSGSSPCHNTYPNSVTFFC 119

[Close]
BLAST of CmoCh07G001100 vs. TrEMBL
Match: A0A022R3F3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b022189mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 1 

Query: 18  SISLSLILLFLLISFSSAKPLLLRRPNLAAH-------HRYRTTLHVGAPTTTFTAKKLQ 77
           +I +SL+LL  LI  SSA P    RP +  H       HR+R+     +  T        
Sbjct: 6   TIFISLLLLLSLIIISSAGPTSAARPAVIPHADYYYYRHRHRSIKKSSSSGTATPDFLNN 65

Query: 78  METNKKKKK-------NKATAFSAMLPKGFVPPSGSSPCHNENPEFVAFYC 115
           ++ ++KKKK       ++   FSAMLPKG+VPPSGSSPCHN  P  V F+C
Sbjct: 66  VDHHQKKKKRIMGNRLDEERRFSAMLPKGYVPPSGSSPCHNVYPNSVTFFC 116

[Close]
BLAST of CmoCh07G001100 vs. TrEMBL
Match: A0A151R872_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039976 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 44/118 (37.29%), Postives = 71/118 (60.17%), Query Frame = 1 

Query: 20  SLSLILLFLL-ISFSSAKPLLLRRPNLAA----HHRYRTTLHVGAPTTTFTA----KKLQ 79
           +++L +LFL   + SS + +  + P+ +     H++     +  + +T+FT     KK +
Sbjct: 3   TITLFILFLFSYTTSSTQEIQPQNPSSSTPPTHHYQVFYLKNTHSSSTSFTKQERFKKRR 62

Query: 80  METNKKKKKN------KATAFSAMLPKGFVPPSGSSPCHNENPEFV-AFYCHLSATNP 122
           ++ NK  +K       ++ +FSAMLPKGFVPPSGSSPCHN+ P  + +F+CHLS T P
Sbjct: 63  IKRNKNHRKKMVKNMQQSRSFSAMLPKGFVPPSGSSPCHNDQPNSLSSFHCHLSTTQP 120

[Close]
BLAST of CmoCh07G001100 vs. TrEMBL
Match: G7IPW5_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g019510 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-08
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1 

Query: 67  KKLQMETNKKKKKNK---------ATAFSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLS 122
           K   M   KK +K+K         +  FS MLPKGFVPPSGSSPCHN+ P  V+F+C+L+
Sbjct: 86  KNKNMMKQKKHRKHKKKIVKNMVNSRPFSVMLPKGFVPPSGSSPCHNDQPNSVSFHCYLT 145

[Close]
BLAST of CmoCh07G001100 vs. TAIR10
Match: AT4G18335.1 (AT4G18335.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-08
Identity = 47/137 (34.31%), Postives = 59/137 (43.07%), Query Frame = 1 

Query: 3   FKIQPSSSPNNLYYRSISLSLILLFL--------LISFSSAKPLLL-----------RRP 62
           F I PSSS +N   R  S      +L        L+      P +L           RR 
Sbjct: 25  FLISPSSSSSNQETRVSSTQKTEAYLNGYESPHQLVYIKKTTPFILNQRLQRDNHRRRRY 84

Query: 63  NLAAHHRYRTTLHV--GAPTTTFTAKKLQMETNKKKKKNKATAFSAMLPKGFVPPSGSSP 118
           N   ++ YR TL    G        K +  + N   +  +   FS MLPKGFVPPSGSSP
Sbjct: 85  NHQYYYYYRHTLRHRRGLHHRAGYFKMMAKKNNGLNRPVRQDTFSVMLPKGFVPPSGSSP 144

[Close]
BLAST of CmoCh07G001100 vs. NCBI nr
Match: gi|700194189|gb|KGN49393.1| (hypothetical protein Csa_6G523350 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 71/158 (44.94%), Postives = 87/158 (55.06%), Query Frame = 1 

Query: 1   MGFKIQPS-SSPNNLYYRSISLSLILLFLLI-SFSSAKPLLLRRPNLAAHHRYRTTLHVG 60
           MGFKI  S SSPN L +  ISLSLIL FLL  + SS KPL    P+   + R+RTT+  G
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPS---NVRHRTTVVHG 60

Query: 61  APTTT--------------FTAKKLQME------------------------TNKKKKKN 117
           +  TT              + + KL+ME                        +N K K +
Sbjct: 61  SAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKND 120

[Close]
BLAST of CmoCh07G001100 vs. NCBI nr
Match: gi|731405528|ref|XP_010655811.1| (PREDICTED: uncharacterized protein LOC104880561 [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 50/126 (39.68%), Postives = 60/126 (47.62%), Query Frame = 1 

Query: 14  LYYRSISLSLILLFLLISFSSAKPLLLRRPNLAAHHRYRTTLHVGAPTT--TFTAKK--- 73
           L Y    + L+LLF    FS A        N  + H  + +     PT+   F  K    
Sbjct: 7   LKYFCTLVFLVLLFSFFPFSDA--------NSTSPHEIQASTPSNVPTSYQLFYIKNTPP 66

Query: 74  --LQMETNKKKKKNK-----------ATAFSAMLPKGFVPPSGSSPCHNENPEFVAFYCH 122
             L  E N KKKK +              FSAMLPKGFVPPSGSSPCHN+ P  +AFYC 
Sbjct: 67  FSLNEEINDKKKKRRRRRKKTTKSFRTRPFSAMLPKGFVPPSGSSPCHNDYPNSIAFYCD 124

[Close]
BLAST of CmoCh07G001100 vs. NCBI nr
Match: gi|604327603|gb|EYU33360.1| (hypothetical protein MIMGU_mgv11b022189mg [Erythranthe guttata])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 1 

Query: 18  SISLSLILLFLLISFSSAKPLLLRRPNLAAH-------HRYRTTLHVGAPTTTFTAKKLQ 77
           +I +SL+LL  LI  SSA P    RP +  H       HR+R+     +  T        
Sbjct: 6   TIFISLLLLLSLIIISSAGPTSAARPAVIPHADYYYYRHRHRSIKKSSSSGTATPDFLNN 65

Query: 78  METNKKKKK-------NKATAFSAMLPKGFVPPSGSSPCHNENPEFVAFYC 115
           ++ ++KKKK       ++   FSAMLPKG+VPPSGSSPCHN  P  V F+C
Sbjct: 66  VDHHQKKKKRIMGNRLDEERRFSAMLPKGYVPPSGSSPCHNVYPNSVTFFC 116

[Close]
BLAST of CmoCh07G001100 vs. NCBI nr
Match: gi|1012327000|gb|KYP38751.1| (hypothetical protein KK1_039976 [Cajanus cajan])

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08
Identity = 44/118 (37.29%), Postives = 71/118 (60.17%), Query Frame = 1 

Query: 20  SLSLILLFLL-ISFSSAKPLLLRRPNLAA----HHRYRTTLHVGAPTTTFTA----KKLQ 79
           +++L +LFL   + SS + +  + P+ +     H++     +  + +T+FT     KK +
Sbjct: 3   TITLFILFLFSYTTSSTQEIQPQNPSSSTPPTHHYQVFYLKNTHSSSTSFTKQERFKKRR 62

Query: 80  METNKKKKKN------KATAFSAMLPKGFVPPSGSSPCHNENPEFV-AFYCHLSATNP 122
           ++ NK  +K       ++ +FSAMLPKGFVPPSGSSPCHN+ P  + +F+CHLS T P
Sbjct: 63  IKRNKNHRKKMVKNMQQSRSFSAMLPKGFVPPSGSSPCHNDQPNSLSSFHCHLSTTQP 120

[Close]
BLAST of CmoCh07G001100 vs. NCBI nr
Match: gi|357447313|ref|XP_003593932.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 65.1 bits (157), Expect = 9.7e-08
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1 

Query: 67  KKLQMETNKKKKKNK---------ATAFSAMLPKGFVPPSGSSPCHNENPEFVAFYCHLS 122
           K   M   KK +K+K         +  FS MLPKGFVPPSGSSPCHN+ P  V+F+C+L+
Sbjct: 86  KNKNMMKQKKHRKHKKKIVKNMVNSRPFSVMLPKGFVPPSGSSPCHNDQPNSVSFHCYLT 145

The following BLAST results are available for this feature:
BLAST of CmoCh07G001100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G001100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIK1_CUCSA1.8e-1644.94Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523350 PE=4 SV=1[more]
M1DF05_SOLTU2.3e-0852.38Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037562 PE=4 SV=1[more]
A0A022R3F3_ERYGU2.3e-0840.54Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b022189mg PE=4 SV=1[more]
A0A151R872_CAJCA3.0e-0837.29Uncharacterized protein OS=Cajanus cajan GN=KK1_039976 PE=4 SV=1[more]
G7IPW5_MEDTR6.8e-0850.00Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g019510 PE=4 SV=1[more]
BLAST of CmoCh07G001100 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18335.16.1e-0834.31 unknown protein[more]
BLAST of CmoCh07G001100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194189|gb|KGN49393.1|2.6e-1644.94hypothetical protein Csa_6G523350 [Cucumis sativus][more]
gi|731405528|ref|XP_010655811.1|1.5e-0839.68PREDICTED: uncharacterized protein LOC104880561 [Vitis vinifera][more]
gi|604327603|gb|EYU33360.1|3.3e-0840.54hypothetical protein MIMGU_mgv11b022189mg [Erythranthe guttata][more]
gi|1012327000|gb|KYP38751.1|4.4e-0837.29hypothetical protein KK1_039976 [Cajanus cajan][more]
gi|357447313|ref|XP_003593932.1|9.7e-0850.00transmembrane protein, putative [Medicago truncatula][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G001100.1CmoCh07G001100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G001100Cucsa.047710Cucumber (Gy14) v1cgycmoB0043
CmoCh07G001100CmaCh07G001100Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G001100CmaCh03G013980Cucurbita maxima (Rimu)cmacmoB672
CmoCh07G001100Cla009770Watermelon (97103) v1cmowmB816
CmoCh07G001100Csa6G523350Cucumber (Chinese Long) v2cmocuB865
CmoCh07G001100MELO3C007136Melon (DHL92) v3.5.1cmomeB782
CmoCh07G001100ClCG01G024590Watermelon (Charleston Gray)cmowcgB755
CmoCh07G001100CSPI06G36250Wild cucumber (PI 183967)cmocpiB873
CmoCh07G001100Lsi01G001510Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G001100Cp4.1LG10g05970Cucurbita pepo (Zucchini)cmocpeB801
CmoCh07G001100Cp4.1LG19g06190Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G001100MELO3C007136.2Melon (DHL92) v3.6.1cmomedB886
CmoCh07G001100CsaV3_6G051710Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G001100Cla97C01G024540Watermelon (97103) v2cmowmbB849
CmoCh07G001100Carg19268Silver-seed gourdcarcmoB0410
CmoCh07G001100Carg15010Silver-seed gourdcarcmoB0996
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G001100Melon (DHL92) v3.6.1cmomedB875
CmoCh07G001100Silver-seed gourdcarcmoB0572
CmoCh07G001100Silver-seed gourdcarcmoB1083
CmoCh07G001100Cucumber (Chinese Long) v3cmocucB0988
CmoCh07G001100Watermelon (97103) v2cmowmbB857
CmoCh07G001100Wax gourdcmowgoB1062
CmoCh07G001100Wax gourdcmowgoB1074
CmoCh07G001100Cucurbita moschata (Rifu)cmocmoB190
CmoCh07G001100Cucurbita moschata (Rifu)cmocmoB350
CmoCh07G001100Cucurbita moschata (Rifu)cmocmoB459
CmoCh07G001100Cucurbita maxima (Rimu)cmacmoB240
CmoCh07G001100Cucurbita maxima (Rimu)cmacmoB429
CmoCh07G001100Wild cucumber (PI 183967)cmocpiB844
CmoCh07G001100Cucumber (Chinese Long) v2cmocuB834
CmoCh07G001100Melon (DHL92) v3.5.1cmomeB771
CmoCh07G001100Watermelon (Charleston Gray)cmowcgB760
CmoCh07G001100Watermelon (97103) v1cmowmB809
CmoCh07G001100Cucurbita pepo (Zucchini)cmocpeB798
CmoCh07G001100Cucurbita pepo (Zucchini)cmocpeB818
CmoCh07G001100Bottle gourd (USVL1VR-Ls)cmolsiB783
CmoCh07G001100Cucumber (Gy14) v2cgybcmoB132
CmoCh07G001100Cucumber (Gy14) v2cgybcmoB843