Cla009770 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009770
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 32722056 .. 32722256 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCCGGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGTGCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATCCTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCGGCCTTGA

mRNA sequence

ATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCCGGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGTGCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATCCTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCGGCCTTGA

Coding sequence (CDS)

ATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCCGGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGTGCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATCCTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCGGCCTTGA

Protein sequence

MEIKINKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP

Homology

[Close]

BLAST of Cla009770 vs. TrEMBL
Match: A0A0A0KIK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-20
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1   MEIKINKSKKK---KKV---PVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNEN 60
           MEIKINK  KK   +KV   P GFKS+N+   N+KGSAFS MLPKGFVPPSGSSPCHNE+
Sbjct: 84  MEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGSAFSAMLPKGFVPPSGSSPCHNED 143

Query: 61  PQSSSLTFYCHLDRP 67
           PQSSSL FYCHLDRP
Sbjct: 144 PQSSSLAFYCHLDRP 158

[Close]

BLAST of Cla009770 vs. TrEMBL
Match: A0A067L1H6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04607 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-10
Identity = 40/61 (65.57%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 5   INKSKKKKKVPVGFKSNNN--NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCH 64
           INK KK KK  V  K      N K  AFSVMLPKGFVPPSGSSPCHNE P +S LTF+C 
Sbjct: 66  INKKKKNKKGKVVKKRRKQIKNFKTRAFSVMLPKGFVPPSGSSPCHNEKP-TSRLTFHCD 125

[Close]

BLAST of Cla009770 vs. TrEMBL
Match: V7BTK0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G164500g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 6   NKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL 64
           N  + +KK+ V  K+ + +     FSVMLPKGFVPPSGSSPCHN+ P S S +F+CHL
Sbjct: 89  NMMRHRKKMVV--KNMHQSRDSRPFSVMLPKGFVPPSGSSPCHNDQPNSVSSSFHCHL 144

[Close]

BLAST of Cla009770 vs. TrEMBL
Match: A0A162B887_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003919 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-09
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 7   KSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP 66
           +SK KK       S NNN    AF+ MLPKGF+PPSGSSPCHN+ P  +S+TF+C L  P
Sbjct: 842 ESKNKKTRRKTRSSKNNNIDTRAFTTMLPKGFIPPSGSSPCHNDFP--NSITFFCELSSP 899

[Close]

BLAST of Cla009770 vs. TrEMBL
Match: A0A0L9VEV2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g224500 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.7e-09
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 6   NKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL 64
           NK+  + +  +  K+ + +     FSVMLPKG+VPPSGSSPCHN+ P + S +F+CHL
Sbjct: 88  NKNMMRHRKKIVSKNMHQSRDSQRFSVMLPKGYVPPSGSSPCHNDQPNTVSSSFHCHL 145

[Close]

BLAST of Cla009770 vs. NCBI nr
Match: gi|700194189|gb|KGN49393.1| (hypothetical protein Csa_6G523350 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1   MEIKINKSKKK---KKV---PVGFKSNNN---NNKGSAFSVMLPKGFVPPSGSSPCHNEN 60
           MEIKINK  KK   +KV   P GFKS+N+   N+KGSAFS MLPKGFVPPSGSSPCHNE+
Sbjct: 84  MEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGSAFSAMLPKGFVPPSGSSPCHNED 143

Query: 61  PQSSSLTFYCHLDRP 67
           PQSSSL FYCHLDRP
Sbjct: 144 PQSSSLAFYCHLDRP 158

[Close]

BLAST of Cla009770 vs. NCBI nr
Match: gi|643730532|gb|KDP37964.1| (hypothetical protein JCGZ_04607 [Jatropha curcas])

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-10
Identity = 40/61 (65.57%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 5   INKSKKKKKVPVGFKSNNN--NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCH 64
           INK KK KK  V  K      N K  AFSVMLPKGFVPPSGSSPCHNE P +S LTF+C 
Sbjct: 66  INKKKKNKKGKVVKKRRKQIKNFKTRAFSVMLPKGFVPPSGSSPCHNEKP-TSRLTFHCD 125

[Close]

BLAST of Cla009770 vs. NCBI nr
Match: gi|593694780|ref|XP_007147902.1| (hypothetical protein PHAVU_006G164500g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-09
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 6   NKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL 64
           N  + +KK+ V  K+ + +     FSVMLPKGFVPPSGSSPCHN+ P S S +F+CHL
Sbjct: 89  NMMRHRKKMVV--KNMHQSRDSRPFSVMLPKGFVPPSGSSPCHNDQPNSVSSSFHCHL 144

[Close]

BLAST of Cla009770 vs. NCBI nr
Match: gi|1021053485|gb|KZN11263.1| (hypothetical protein DCAR_003919 [Daucus carota subsp. sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-09
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 7   KSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP 66
           +SK KK       S NNN    AF+ MLPKGF+PPSGSSPCHN+ P  +S+TF+C L  P
Sbjct: 842 ESKNKKTRRKTRSSKNNNIDTRAFTTMLPKGFIPPSGSSPCHNDFP--NSITFFCELSSP 899

[Close]

BLAST of Cla009770 vs. NCBI nr
Match: gi|920712337|gb|KOM53586.1| (hypothetical protein LR48_Vigan09g224500 [Vigna angularis])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 6   NKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL 64
           NK+  + +  +  K+ + +     FSVMLPKG+VPPSGSSPCHN+ P + S +F+CHL
Sbjct: 88  NKNMMRHRKKIVSKNMHQSRDSQRFSVMLPKGYVPPSGSSPCHNDQPNTVSSSFHCHL 145

The following BLAST results are available for this feature:

BLAST of Cla009770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIK1_CUCSA	1.1e-20	74.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523350 PE=4 SV=1	[more]
A0A067L1H6_JATCU	3.0e-10	65.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04607 PE=4 SV=1	[more]
V7BTK0_PHAVU	3.3e-09	55.17	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G164500g PE=4 SV=1	[more]
A0A162B887_DAUCA	5.7e-09	55.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003919 PE=4 SV=1	[more]
A0A0L9VEV2_PHAAN	9.7e-09	48.28	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g224500 PE=4 SV=1	[more]

BLAST of Cla009770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194189\|gb\|KGN49393.1\|	1.6e-20	74.67	hypothetical protein Csa_6G523350 [Cucumis sativus]	[more]
gi\|643730532\|gb\|KDP37964.1\|	4.3e-10	65.57	hypothetical protein JCGZ_04607 [Jatropha curcas]	[more]
gi\|593694780\|ref\|XP_007147902.1\|	4.8e-09	55.17	hypothetical protein PHAVU_006G164500g [Phaseolus vulgaris]	[more]
gi\|1021053485\|gb\|KZN11263.1\|	8.2e-09	55.00	hypothetical protein DCAR_003919 [Daucus carota subsp. sativus]	[more]
gi\|920712337\|gb\|KOM53586.1\|	1.4e-08	48.28	hypothetical protein LR48_Vigan09g224500 [Vigna angularis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU61683	watermelon EST collection version 2.0	transcribed_cluster
WMU72752	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009770	Cla009770.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU72752	WMU72752	transcribed_cluster
WMU61683	WMU61683	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009770	Cla97C01G024540	Watermelon (97103) v2	wmwmbB234
Cla009770	Csa6G523350	Cucumber (Chinese Long) v2	cuwmB500
Cla009770	MELO3C007136	Melon (DHL92) v3.5.1	mewmB572
Cla009770	ClCG01G024590	Watermelon (Charleston Gray)	wcgwmB141
Cla009770	CSPI06G36250	Wild cucumber (PI 183967)	cpiwmB519
Cla009770	Cucsa.047710	Cucumber (Gy14) v1	cgywmB026
Cla009770	CmaCh07G001100	Cucurbita maxima (Rimu)	cmawmB826
Cla009770	CmaCh03G013980	Cucurbita maxima (Rimu)	cmawmB628
Cla009770	CmoCh07G001100	Cucurbita moschata (Rifu)	cmowmB816
Cla009770	Lsi01G001510	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla009770	Cp4.1LG10g05970	Cucurbita pepo (Zucchini)	cpewmB074
Cla009770	MELO3C007136.2	Melon (DHL92) v3.6.1	medwmB561
Cla009770	Carg19268	Silver-seed gourd	carwmB0292
Cla009770	Carg15010	Silver-seed gourd	carwmB0730
Cla009770	CsaV3_6G051710	Cucumber (Chinese Long) v3	cucwmB526

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009770	Watermelon (97103) v1	wmwmB084
Cla009770	Cucurbita maxima (Rimu)	cmawmB201
Cla009770	Cucurbita maxima (Rimu)	cmawmB379
Cla009770	Cucurbita moschata (Rifu)	cmowmB188
Cla009770	Cucurbita moschata (Rifu)	cmowmB372
Cla009770	Cucurbita moschata (Rifu)	cmowmB619
Cla009770	Melon (DHL92) v3.5.1	mewmB167
Cla009770	Watermelon (Charleston Gray)	wcgwmB238
Cla009770	Cucumber (Chinese Long) v2	cuwmB052
Cla009770	Cucurbita pepo (Zucchini)	cpewmB039
Cla009770	Cucurbita pepo (Zucchini)	cpewmB482
Cla009770	Cucurbita pepo (Zucchini)	cpewmB513
Cla009770	Bottle gourd (USVL1VR-Ls)	lsiwmB200
Cla009770	Cucumber (Gy14) v2	cgybwmB052
Cla009770	Cucumber (Gy14) v2	cgybwmB468
Cla009770	Melon (DHL92) v3.6.1	medwmB164
Cla009770	Silver-seed gourd	carwmB0420
Cla009770	Silver-seed gourd	carwmB0798
Cla009770	Cucumber (Chinese Long) v3	cucwmB058
Cla009770	Watermelon (97103) v2	wmwmbB261
Cla009770	Wax gourd	wgowmB427
Cla009770	Wax gourd	wgowmB507