Cla001170 (gene) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA MGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST
BLAST of Cla001170 vs. Swiss-Prot
Match: RTL1_MOUSE (Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11 Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 1
HSP 2 Score: 64.7 bits (156), Expect = 1.3e-09 Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 1
HSP 3 Score: 64.7 bits (156), Expect = 1.3e-09 Identity = 27/83 (32.53%), Postives = 54/83 (65.06%), Query Frame = 1
HSP 4 Score: 62.4 bits (150), Expect = 6.3e-09 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
HSP 5 Score: 60.1 bits (144), Expect = 3.1e-08 Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 1
HSP 6 Score: 59.3 bits (142), Expect = 5.3e-08 Identity = 27/80 (33.75%), Postives = 50/80 (62.50%), Query Frame = 1
HSP 7 Score: 57.4 bits (137), Expect = 2.0e-07 Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 1
BLAST of Cla001170 vs. Swiss-Prot
Match: GARP_PLAFF (Glutamic acid-rich protein OS=Plasmodium falciparum (isolate FC27 / Papua New Guinea) GN=GARP PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10 Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1
HSP 2 Score: 62.0 bits (149), Expect = 8.2e-09 Identity = 31/105 (29.52%), Postives = 64/105 (60.95%), Query Frame = 1
BLAST of Cla001170 vs. Swiss-Prot
Match: PELP1_MACMU (Proline-, glutamic acid- and leucine-rich protein 1 OS=Macaca mulatta GN=PELP1 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 5.3e-08 Identity = 28/79 (35.44%), Postives = 52/79 (65.82%), Query Frame = 1
HSP 2 Score: 33.9 bits (76), Expect = 2.4e+00 Identity = 18/64 (28.12%), Postives = 32/64 (50.00%), Query Frame = 1
BLAST of Cla001170 vs. Swiss-Prot
Match: ICP22_SUHVK (Transcriptional regulator ICP22 homolog OS=Suid herpesvirus 1 (strain Kaplan) GN=RSP40 PE=3 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07 Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1
HSP 2 Score: 42.7 bits (99), Expect = 5.1e-03 Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 1
HSP 3 Score: 31.6 bits (70), Expect = 1.2e+01 Identity = 17/55 (30.91%), Postives = 28/55 (50.91%), Query Frame = 1
BLAST of Cla001170 vs. Swiss-Prot
Match: AN32B_BOVIN (Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Bos taurus GN=ANP32B PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.5e-07 Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1
HSP 2 Score: 36.6 bits (83), Expect = 3.7e-01 Identity = 28/96 (29.17%), Postives = 41/96 (42.71%), Query Frame = 1
BLAST of Cla001170 vs. TrEMBL
Match: A0A0A0L728_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036520 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 6.9e-39 Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 1
BLAST of Cla001170 vs. TrEMBL
Match: U6PI30_HAECO (Uncharacterized protein OS=Haemonchus contortus GN=HCOI_01413300 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09 Identity = 31/80 (38.75%), Postives = 56/80 (70.00%), Query Frame = 1
BLAST of Cla001170 vs. TrEMBL
Match: U6PI30_HAECO (Uncharacterized protein OS=Haemonchus contortus GN=HCOI_01413300 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08 Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 1
HSP 2 Score: 42.0 bits (97), Expect = 9.8e-01 Identity = 18/46 (39.13%), Postives = 31/46 (67.39%), Query Frame = 1
HSP 3 Score: 71.2 bits (173), Expect = 1.5e-09 Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1
BLAST of Cla001170 vs. TrEMBL
Match: A0A0G2I8J9_9EURO (Uncharacterized protein OS=Emmonsia crescens UAMH 3008 GN=EMCG_07453 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08 Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1
HSP 2 Score: 69.3 bits (168), Expect = 5.7e-09 Identity = 31/80 (38.75%), Postives = 54/80 (67.50%), Query Frame = 1
BLAST of Cla001170 vs. TrEMBL
Match: B4YB44_MOUSE (Retrotransposon-like 1 OS=Mus musculus GN=Rtl1 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07 Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 1
HSP 2 Score: 64.7 bits (156), Expect = 1.4e-07 Identity = 27/83 (32.53%), Postives = 55/83 (66.27%), Query Frame = 1
HSP 3 Score: 62.4 bits (150), Expect = 7.0e-07 Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 1
HSP 4 Score: 60.1 bits (144), Expect = 3.5e-06 Identity = 34/106 (32.08%), Postives = 56/106 (52.83%), Query Frame = 1
HSP 5 Score: 59.3 bits (142), Expect = 5.9e-06 Identity = 27/80 (33.75%), Postives = 51/80 (63.75%), Query Frame = 1
HSP 6 Score: 57.4 bits (137), Expect = 2.2e-05 Identity = 30/88 (34.09%), Postives = 54/88 (61.36%), Query Frame = 1
HSP 7 Score: 68.9 bits (167), Expect = 7.5e-09 Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 1
BLAST of Cla001170 vs. NCBI nr
Match: gi|700200793|gb|KGN55926.1| (hypothetical protein Csa_3G036520 [Cucumis sativus]) HSP 1 Score: 168.7 bits (426), Expect = 9.9e-39 Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 1
BLAST of Cla001170 vs. NCBI nr
Match: gi|802742072|ref|XP_012087235.1| (PREDICTED: secreted acidic protein 1A [Jatropha curcas]) HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12 Identity = 62/178 (34.83%), Postives = 92/178 (51.69%), Query Frame = 1
BLAST of Cla001170 vs. NCBI nr
Match: gi|821510648|gb|KKZ66848.1| (hypothetical protein EMCG_07453 [Emmonsia crescens UAMH 3008]) HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09 Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1
BLAST of Cla001170 vs. NCBI nr
Match: gi|821510648|gb|KKZ66848.1| (hypothetical protein EMCG_07453 [Emmonsia crescens UAMH 3008]) HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08 Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1
HSP 2 Score: 70.9 bits (172), Expect = 2.8e-09 Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
BLAST of Cla001170 vs. NCBI nr
Match: gi|46309585|ref|NP_908998.1| (retrotransposon-like protein 1 [Mus musculus]) HSP 1 Score: 69.3 bits (168), Expect = 8.2e-09 Identity = 31/80 (38.75%), Postives = 54/80 (67.50%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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