CsaV3_3G003290 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G003290
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 2744276 .. 2744929 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGGAAAAATGGGAATGAGGATTATGTTGGGGTTAATACCAATTTTGGTGGTGATGGTTTTGTTGGTAACATCAAAATCATCTCAATTTTTTCTACTTTTTGGTAGTCCTCATTTCATTTTCTCAATCTTCAACTCCATAATTCTTCTCATAACTATGAGAAACCATGAGGAGCCACAACCTCATGAACAATTTGATATAATGGAACTTATTCTTCAATTATCTCCCTATCATAATAAGCCCCATCATCAAGATACTGAATTTCATGACGATCACAAAGATAAAAGAGTAGAAGACGATGATGGAGATGTAAACACCGACGATCAATATGACAACCGAAATGAGAAAGAAGACAAGGTCAGTGATGAAGATGAAATGAAGGAATGGGATGAGAAAGAAGGTGAAGATGATGAATATGATGAGGCCGAGGGGTGGGACGAGGAAGAAGAAGATGAAGAGTTGGAGATGAGGATTGAAGAGTTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGGGACCATTTGCTTATTCAAATTTGTTCTACTAATAATGTTACTAATATCTCAAATTAAATCAATATCTTCTTTTGTGACATTTTTCCATTCATAACTTTGTTTTGTTACTCTCATTTATTATATCATCA

mRNA sequence

ATGGGAATGAGGATTATGTTGGGGTTAATACCAATTTTGGTGGTGATGGTTTTGTTGGTAACATCAAAATCATCTCAATTTTTTCTACTTTTTGGTAGTCCTCATTTCATTTTCTCAATCTTCAACTCCATAATTCTTCTCATAACTATGAGAAACCATGAGGAGCCACAACCTCATGAACAATTTGATATAATGGAACTTATTCTTCAATTATCTCCCTATCATAATAAGCCCCATCATCAAGATACTGAATTTCATGACGATCACAAAGATAAAAGAGTAGAAGACGATGATGGAGATGTAAACACCGACGATCAATATGACAACCGAAATGAGAAAGAAGACAAGGTCAGTGATGAAGATGAAATGAAGGAATGGGATGAGAAAGAAGGTGAAGATGATGAATATGATGAGGCCGAGGGGTGGGACGAGGAAGAAGAAGATGAAGAGTTGGAGATGAGGATTGAAGAGTTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGGGACCATTTGCTTATTCAAATTTGTTCTACTAATAATGTTACTAATATCTCAAATTAA

Coding sequence (CDS)

ATGGGAATGAGGATTATGTTGGGGTTAATACCAATTTTGGTGGTGATGGTTTTGTTGGTAACATCAAAATCATCTCAATTTTTTCTACTTTTTGGTAGTCCTCATTTCATTTTCTCAATCTTCAACTCCATAATTCTTCTCATAACTATGAGAAACCATGAGGAGCCACAACCTCATGAACAATTTGATATAATGGAACTTATTCTTCAATTATCTCCCTATCATAATAAGCCCCATCATCAAGATACTGAATTTCATGACGATCACAAAGATAAAAGAGTAGAAGACGATGATGGAGATGTAAACACCGACGATCAATATGACAACCGAAATGAGAAAGAAGACAAGGTCAGTGATGAAGATGAAATGAAGGAATGGGATGAGAAAGAAGGTGAAGATGATGAATATGATGAGGCCGAGGGGTGGGACGAGGAAGAAGAAGATGAAGAGTTGGAGATGAGGATTGAAGAGTTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGGGACCATTTGCTTATTCAAATTTGTTCTACTAATAATGTTACTAATATCTCAAATTAA

Protein sequence

MGMRIMLGLIPILVVMVLLVTSKSSQFFLLFGSPHFIFSIFNSIILLITMRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDNRNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREEKLRDHLLIQICSTNNVTNISN

Homology

[Close]

BLAST of CsaV3_3G003290 vs. NCBI nr
Match: KGN55926.1 (hypothetical protein Csa_3G036520 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 50  MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDXXXXXXXXXXXXX 109
           MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDXXXXXXXXXXXXX
Sbjct: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDXXXXXXXXXXXXX 60

Query: 110 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRWREE 169
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRWREE
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRWREE 120

Query: 170 KLRDHLLIQICSTNNVTNISN 191
           KLRDHLLIQICSTNNVTNISN
Sbjct: 121 KLRDHLLIQICSTNNVTNISN 141

[Close]

BLAST of CsaV3_3G003290 vs. NCBI nr
Match: XP_023552966.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MGMRIMLGLIPILVVMVLLVTSKSSQFFLLFGSPHFIFSIFNSIILLITMRNHEEPQPHE 60
          MGMR+M+GL+PILVVMVLL  S +  +  LFGSP+ IFSIFN IILL+T+RNH EP+P  
Sbjct: 1  MGMRVMVGLVPILVVMVLLWVSSNPSY--LFGSPYIIFSIFNFIILLVTVRNH-EPRPFL 58

Query: 61 Q 62
          Q
Sbjct: 61 Q 58

[Close]

BLAST of CsaV3_3G003290 vs. NCBI nr
Match: XP_022923261.1 (nucleolin-like [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 6  MLGLIPILVVMVLLVTSKSSQFFLLFGSPHFIFSIFNSIILLITMRNHE 55
          M+GL+PILVV+VLL  S +     LFGSP+ IFSIFN +ILL+T+RNHE
Sbjct: 1  MVGLVPILVVVVLLWVSSNPSH--LFGSPYIIFSIFNFMILLVTVRNHE 47

[Close]

BLAST of CsaV3_3G003290 vs. TrEMBL
Match: tr|A0A0A0L728|A0A0A0L728_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.0e-37
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 50  MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDXXXXXXXXXXXXX 109
           MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDXXXXXXXXXXXXX
Sbjct: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDXXXXXXXXXXXXX 60

Query: 110 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRWREE 169
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRWREE
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRWREE 120

Query: 170 KLRDHLLIQICSTNNVTNISN 191
           KLRDHLLIQICSTNNVTNISN
Sbjct: 121 KLRDHLLIQICSTNNVTNISN 141

The following BLAST results are available for this feature:

BLAST of CsaV3_3G003290 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55926.1	1.1e-36	100.00	hypothetical protein Csa_3G036520 [Cucumis sativus]	[more]
XP_023552966.1	2.7e-08	65.57	glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923261.1	4.0e-04	63.27	nucleolin-like [Cucurbita moschata]	[more]

BLAST of CsaV3_3G003290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G003290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G003290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L728\|A0A0A0L728_CUCSA	7.0e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G003290.1	CsaV3_3G003290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..123
None	No IPR available	PANTHER	PTHR36595	FAMILY NOT NAMED	coord: 20..175

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G003290	CSPI03G03240	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G003290	CsGy3G003190	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G003290	Cla001170	Watermelon (97103) v1	cucwmB211
CsaV3_3G003290	MELO3C013995	Melon (DHL92) v3.5.1	cucmeB246
CsaV3_3G003290	ClCG10G003260	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G003290	MELO3C013995.2	Melon (DHL92) v3.6.1	cucmedB231
CsaV3_3G003290	Cla97C10G187750	Watermelon (97103) v2	cucwmbB182
CsaV3_3G003290	BhiUN285G45	Wax gourd	cucwgoB271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G003290	Cucumber (Chinese Long) v3	cuccucB124
CsaV3_3G003290	Silver-seed gourd	carcucB0905
CsaV3_3G003290	Silver-seed gourd	carcucB0902
CsaV3_3G003290	Silver-seed gourd	carcucB0977
CsaV3_3G003290	Cucumber (Gy14) v2	cgybcucB217
CsaV3_3G003290	Cucumber (Gy14) v1	cgycucB465
CsaV3_3G003290	Cucumber (Gy14) v1	cgycucB499
CsaV3_3G003290	Cucurbita maxima (Rimu)	cmacucB0331
CsaV3_3G003290	Cucurbita maxima (Rimu)	cmacucB0381
CsaV3_3G003290	Cucurbita maxima (Rimu)	cmacucB0714
CsaV3_3G003290	Cucurbita maxima (Rimu)	cmacucB0975
CsaV3_3G003290	Cucurbita moschata (Rifu)	cmocucB0326
CsaV3_3G003290	Cucurbita moschata (Rifu)	cmocucB0378
CsaV3_3G003290	Cucurbita moschata (Rifu)	cmocucB0700
CsaV3_3G003290	Cucurbita moschata (Rifu)	cmocucB0961
CsaV3_3G003290	Cucurbita pepo (Zucchini)	cpecucB0201
CsaV3_3G003290	Cucurbita pepo (Zucchini)	cpecucB0256
CsaV3_3G003290	Cucurbita pepo (Zucchini)	cpecucB0904
CsaV3_3G003290	Cucurbita pepo (Zucchini)	cpecucB1047
CsaV3_3G003290	Wild cucumber (PI 183967)	cpicucB269
CsaV3_3G003290	Bottle gourd (USVL1VR-Ls)	cuclsiB172
CsaV3_3G003290	Bottle gourd (USVL1VR-Ls)	cuclsiB250
CsaV3_3G003290	Melon (DHL92) v3.5.1	cucmeB166
CsaV3_3G003290	Melon (DHL92) v3.6.1	cucmedB155
CsaV3_3G003290	Watermelon (Charleston Gray)	cucwcgB179
CsaV3_3G003290	Watermelon (Charleston Gray)	cucwcgB211
CsaV3_3G003290	Watermelon (97103) v1	cucwmB205
CsaV3_3G003290	Watermelon (97103) v1	cucwmB273
CsaV3_3G003290	Watermelon (97103) v2	cucwmbB178
CsaV3_3G003290	Wax gourd	cucwgoB260