Cla97C10G187750 (gene) Watermelon (97103) v2

Overview
NameCla97C10G187750
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionTranslation initiation factor IF-2, putative
LocationCla97Chr10 : 3756735 .. 3757313 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA

mRNA sequence

ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA

Coding sequence (CDS)

ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA

Protein sequence

MGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST
Homology
[Close]
BLAST of Cla97C10G187750 vs. NCBI nr
Match: KGN55926.1 (hypothetical protein Csa_3G036520 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 114/141 (80.85%), Postives = 121/141 (85.82%), Query Frame = 0 

Query: 53  VRNHDEPQPHEQFEIMELILQLSPYH-KP-HQDIEFSAREDTREDDGEXXXXXXXXXXXX 112
           +RNH+EPQPHEQF+IMELILQLSPYH KP HQD EF    D  +D     XXXXXXXXXX
Sbjct: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEF---HDDHKDKRVEDXXXXXXXXXX 60

Query: 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEFIAKVNKRW 172
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    IEEFIAKVNKRW
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRW 120

Query: 173 REEKLRDHFLIQICSSNYVSS 192
           REEKLRDH LIQICS+N V++
Sbjct: 121 REEKLRDHLLIQICSTNNVTN 138

[Close]
BLAST of Cla97C10G187750 vs. NCBI nr
Match: XP_022923261.1 (nucleolin-like [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 50/86 (58.14%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 6  MVGLAPILVVVI-LWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQ 65
          MVGL PILVVV+ LWV+S        S+LFGSP+ IFSIFN +ILL+TVRNH EP+    
Sbjct: 1  MVGLVPILVVVVLLWVSS------NPSHLFGSPYIIFSIFNFMILLVTVRNH-EPR---- 60

Query: 66 FEIMELILQLSPYHKPHQDIEFSARE 91
                +LQ S YHK  QD EFSARE
Sbjct: 61 -----CLLQPS-YHKLCQDAEFSARE 69

[Close]
BLAST of Cla97C10G187750 vs. NCBI nr
Match: XP_023552966.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0 

Query: 1  MGMRIMVGLAPILVV-VILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEP 60
          MGMR+MVGL PILVV V+LWV+S  S       LFGSP+ IFSIFN IILL+TVRNH EP
Sbjct: 1  MGMRVMVGLVPILVVMVLLWVSSNPSY------LFGSPYIIFSIFNFIILLVTVRNH-EP 58

Query: 61 QPHEQ 65
          +P  Q
Sbjct: 61 RPFLQ 58

[Close]
BLAST of Cla97C10G187750 vs. NCBI nr
Match: XP_023005569.1 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita maxima])

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-05
Identity = 110/195 (56.41%), Postives = 119/195 (61.03%), Query Frame = 0 

Query: 1   MGMRIMVGLA-----PILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRN 60
           MGMRIMVGL                              GSPHF+FSIFNSIILLI V  
Sbjct: 1   MGMRIMVGLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPHFMFSIFNSIILLIIVTY 60

Query: 61  HDEPQPHEQFEIME---LILQLSPYHKPHQDIEFSAREDTREDDGEXXXXXXXXXXXXXX 120
           H  P     + I +    +     Y+ P Q+IEF A +D  + D         XXXXXXX
Sbjct: 61  HRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDSD---------XXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEFIAKVNKRWRE 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AKVNKRWRE
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVNKRWRE 180

Query: 181 EKLRDHFLIQICSSN 188
           EKLRD+   Q CSSN
Sbjct: 181 EKLRDNLFNQFCSSN 186

[Close]
BLAST of Cla97C10G187750 vs. TrEMBL
Match: tr|A0A0A0L728|A0A0A0L728_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 114/141 (80.85%), Postives = 121/141 (85.82%), Query Frame = 0 

Query: 53  VRNHDEPQPHEQFEIMELILQLSPYH-KP-HQDIEFSAREDTREDDGEXXXXXXXXXXXX 112
           +RNH+EPQPHEQF+IMELILQLSPYH KP HQD EF    D  +D     XXXXXXXXXX
Sbjct: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEF---HDDHKDKRVEDXXXXXXXXXX 60

Query: 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEFIAKVNKRW 172
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    IEEFIAKVNKRW
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMRIEEFIAKVNKRW 120

Query: 173 REEKLRDHFLIQICSSNYVSS 192
           REEKLRDH LIQICS+N V++
Sbjct: 121 REEKLRDHLLIQICSTNNVTN 138

The following BLAST results are available for this feature:
BLAST of Cla97C10G187750 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55926.11.8e-1580.85hypothetical protein Csa_3G036520 [Cucumis sativus][more]
XP_022923261.12.5e-0958.14nucleolin-like [Cucurbita moschata][more]
XP_023552966.14.2e-0966.15glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo][more]
XP_023005569.13.7e-0556.41acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita ma... [more]
BLAST of Cla97C10G187750 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L728|A0A0A0L728_CUCSA1.2e-1580.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1[more]
BLAST of Cla97C10G187750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C10G187750 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
biological_process GO:0008150 biological_process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0006629 lipid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G187750.1Cla97C10G187750.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 135..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..156
NoneNo IPR availablePANTHERPTHR36595FAMILY NOT NAMEDcoord: 35..179

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C10G187750Cla001170Watermelon (97103) v1wmwmbB058
Cla97C10G187750Csa3G036520Cucumber (Chinese Long) v2cuwmbB181
Cla97C10G187750ClCG10G003260Watermelon (Charleston Gray)wcgwmbB038
Cla97C10G187750CSPI03G03240Wild cucumber (PI 183967)cpiwmbB184
Cla97C10G187750MELO3C013995.2Melon (DHL92) v3.6.1medwmbB415
Cla97C10G187750CsaV3_3G003290Cucumber (Chinese Long) v3cucwmbB182
Cla97C10G187750BhiUN285G45Wax gourdwgowmbB164
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C10G187750Melon (DHL92) v3.5.1mewmbB430
Cla97C10G187750Watermelon (97103) v2wmbwmbB002
Cla97C10G187750Silver-seed gourdcarwmbB0900
Cla97C10G187750Silver-seed gourdcarwmbB0905
Cla97C10G187750Silver-seed gourdcarwmbB0981
Cla97C10G187750Cucumber (Gy14) v2cgybwmbB174
Cla97C10G187750Cucumber (Gy14) v2cgybwmbB339
Cla97C10G187750Cucumber (Gy14) v1cgywmbB521
Cla97C10G187750Cucumber (Gy14) v1cgywmbB562
Cla97C10G187750Cucurbita maxima (Rimu)cmawmbB290
Cla97C10G187750Cucurbita maxima (Rimu)cmawmbB338
Cla97C10G187750Cucurbita maxima (Rimu)cmawmbB845
Cla97C10G187750Cucurbita moschata (Rifu)cmowmbB272
Cla97C10G187750Cucurbita moschata (Rifu)cmowmbB321
Cla97C10G187750Cucurbita moschata (Rifu)cmowmbB819
Cla97C10G187750Wild cucumber (PI 183967)cpiwmbB372
Cla97C10G187750Cucumber (Chinese Long) v3cucwmbB372
Cla97C10G187750Cucumber (Chinese Long) v2cuwmbB356
Cla97C10G187750Bottle gourd (USVL1VR-Ls)lsiwmbB010
Cla97C10G187750Bottle gourd (USVL1VR-Ls)lsiwmbB395
Cla97C10G187750Melon (DHL92) v3.6.1medwmbB010
Cla97C10G187750Melon (DHL92) v3.5.1mewmbB012
Cla97C10G187750Watermelon (Charleston Gray)wcgwmbB000
Cla97C10G187750Watermelon (Charleston Gray)wcgwmbB094
Cla97C10G187750Watermelon (97103) v1wmwmbB053
Cla97C10G187750Watermelon (97103) v1wmwmbB254
Cla97C10G187750Wax gourdwgowmbB068