Cla001170 (gene) Watermelon (97103) v1

Overview
NameCla001170
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr10 : 4069069 .. 4069647 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA

mRNA sequence

ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA

Coding sequence (CDS)

ATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA

Protein sequence

MGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST
Homology
[Close]
BLAST of Cla001170 vs. Swiss-Prot
Match: RTL1_MOUSE (Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
            ++ E    ED  E++GE  E G + + ++++D +E+E E+  E+E+E  E+ E ++D++E
Sbjct: 1337 EEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEE 1396

Query: 142  VEEWDEKEEEEEELEKRIEE 162
             EE +E+EEEEEE E+  EE
Sbjct: 1397 EEEEEEEEEEEEEEEEEEEE 1416


HSP 2 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 29/80 (36.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
            ++ E    ED  E++GE  E G + + +++ + +E+  E+  E+EDE+ E+ E +++++E
Sbjct: 1348 EEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEEE 1407

Query: 142  VEEWDEKEEEEEELEKRIEE 162
             EE +E+EEEEEE E+  EE
Sbjct: 1408 EEEEEEEEEEEEEEEEDEEE 1427


HSP 3 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 27/83 (32.53%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 85   EFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEE 144
            E    E+  E++GE  E G + +++++D+ +E+E E+  E+E+E+ E+ E +++++E +E
Sbjct: 1366 EEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDE 1425

Query: 145  WDEKEEEE-EELEKRIEEFIAKV 167
             +E EEEE EE+   + E +A +
Sbjct: 1426 EEEDEEEEDEEVPSMVRELLAAI 1448


HSP 4 Score: 62.4 bits (150), Expect = 6.3e-09
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1 

Query: 85   EFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHE---DNERDDDQDE 144
            E    ED  E++GE  E G + + ++++D +E+E E+  + E+E+ E   + E + +++E
Sbjct: 1329 EEEEEEDDEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEE 1388

Query: 145  VEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRD 178
             EE DE+EEEEEE E+  EE   +  +   EE+  D
Sbjct: 1389 EEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEED 1424


HSP 5 Score: 60.1 bits (144), Expect = 3.1e-08
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDE-------------DEIEQWNEKEDE 141
            ++ E    ED  E++GE  E G + +++++DD +E             +E E   E+E E
Sbjct: 1305 EEEEGEEEEDGEEEEGEEEEDGEEEEEEEEDDEEEEGEEEEDGEEEEGEEEEDGEEEEGE 1364

Query: 142  DHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEK 175
            + ED E ++ ++E EE +E EEEEEE E   EE   +  +   EE+
Sbjct: 1365 EEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEEEEEE 1410


HSP 6 Score: 59.3 bits (142), Expect = 5.3e-08
Identity = 27/80 (33.75%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
            +D E    ED  E++GE  E G + + ++++D +E+E E+ +++E+E  E+ + ++++ E
Sbjct: 1294 EDDEEEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEEEEEDDEEEEGEEEEDGEEEEGE 1353

Query: 142  VEEWDEKEEEEEELEKRIEE 162
             EE  E+EE EEE +   EE
Sbjct: 1354 EEEDGEEEEGEEEEDGEEEE 1373


HSP 7 Score: 57.4 bits (137), Expect = 2.0e-07
Identity = 30/88 (34.09%), Postives = 53/88 (60.23%), Query Frame = 1 

Query: 87   SAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWD 146
            S  ED  +D+ E  E G + + ++++D +E+E E+  E++ E+ E+ E DD+++E EE +
Sbjct: 1288 SETEDKEDDEEEEEEDGEEEEGEEEEDGEEEEGEE--EEDGEEEEEEEEDDEEEEGEEEE 1347

Query: 147  EKEEEEEELEKRIEEFIAKVNKRWREEK 175
            + EEEE E E+  EE   +  +   EE+
Sbjct: 1348 DGEEEEGEEEEDGEEEEGEEEEDGEEEE 1373

[Close]
BLAST of Cla001170 vs. Swiss-Prot
Match: GARP_PLAFF (Glutamic acid-rich protein OS=Plasmodium falciparum (isolate FC27 / Papua New Guinea) GN=GARP PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDS---------DEDEIEQWNEKEDEDHED 141
           ++ E    E+  E++ E  E     D++D+DD+         DED+ E+ +++ED+D ED
Sbjct: 583 EEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEED 642

Query: 142 NERDDDQDEVEEWDEKEEEEEELEKRIEEFIAK 166
           ++ D+D+DE +E +E+EEEEEE EK+I+  + K
Sbjct: 643 DDEDEDEDEEDE-EEEEEEEEESEKKIKRNLRK 674


HSP 2 Score: 62.0 bits (149), Expect = 8.2e-09
Identity = 31/105 (29.52%), Postives = 64/105 (60.95%), Query Frame = 1 

Query: 57  DEPQPHEQFEIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDE 116
           DE +  E+ E  E   +     +  ++ E    ED  E+D ++AE    + ++D+DD++E
Sbjct: 575 DEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEE 634

Query: 117 DEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEE 162
           D+ E+ +++ED+D +++E  D++DE EE +E+EE E+++++ + +
Sbjct: 635 DDDEEDDDEEDDDEDEDE--DEEDEEEEEEEEEESEKKIKRNLRK 674

[Close]
BLAST of Cla001170 vs. Swiss-Prot
Match: PELP1_MACMU (Proline-, glutamic acid- and leucine-rich protein 1 OS=Macaca mulatta GN=PELP1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-08
Identity = 28/79 (35.44%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 83  DIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEV 142
           +I  S  E+  E++GE  E   + +++D ++ +EDE E++ E+E+E+ E+ E + +++E 
Sbjct: 882 NINSSDEEEEEEEEGEEEEEEEEEEEEDFEEEEEDE-EEYFEEEEEEEEEFEEEFEEEEG 941

Query: 143 EEWDEKEEEEEELEKRIEE 162
           E  +E+EEE+EE E+ +EE
Sbjct: 942 ELEEEEEEEDEEEEEELEE 959


HSP 2 Score: 33.9 bits (76), Expect = 2.4e+00
Identity = 18/64 (28.12%), Postives = 32/64 (50.00%), Query Frame = 1 

Query: 116 EDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKL 175
           E+++   N    ++ E+ E + +++E EE +E+E+ EEE E   E F     +   EE+ 
Sbjct: 875 EEDLTVININSSDEEEEEEEEGEEEEEEEEEEEEDFEEEEEDEEEYF---EEEEEEEEEF 934

Query: 176 RDHF 180
            + F
Sbjct: 935 EEEF 935

[Close]
BLAST of Cla001170 vs. Swiss-Prot
Match: ICP22_SUHVK (Transcriptional regulator ICP22 homolog OS=Suid herpesvirus 1 (strain Kaplan) GN=RSP40 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1 

Query: 85  EFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEE 144
           EFS R    EDDGE       ++ +++D  +EDE E+  E+EDE+ E+ + D + D  EE
Sbjct: 199 EFSFRGSVCEDDGE-------DEDEEEDGEEEDEDEEGEEEEDEEEEEGDEDGETDVYEE 258

Query: 145 WDEKEEEEEE 155
            DE E+EE+E
Sbjct: 259 DDEAEDEEDE 261


HSP 2 Score: 42.7 bits (99), Expect = 5.1e-03
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 1 

Query: 90  EDTREDDGENAEYGNQNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDQD 141
           E +  DDG + E  ++++ +D+D+ D EDE ++  E   ED ED E D+D+D
Sbjct: 288 EGSGSDDGGDGEDEDEDEDEDEDEDDGEDEEDEEGEDGGEDGEDGEEDEDED 339


HSP 3 Score: 31.6 bits (70), Expect = 1.2e+01
Identity = 17/55 (30.91%), Postives = 28/55 (50.91%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERD 137
           +D +    ED  EDDGE+ E     D++ +D  ++ E  + +E ED + E+  +D
Sbjct: 299 EDEDEDEDEDEDEDDGEDEE-----DEEGEDGGEDGEDGEEDEDEDGEGEEGGKD 348

[Close]
BLAST of Cla001170 vs. Swiss-Prot
Match: AN32B_BOVIN (Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Bos taurus GN=ANP32B PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.5e-07
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 82  QDIEFSAREDTRED-DGENAEYGNQNDQKDQDD--SDEDEIEQWNEKEDEDHEDNERDDD 141
           +D E    ED  ED DGE  E+ ++ D  + +D   +EDE E   E+E+  H+    +DD
Sbjct: 169 EDDEEGEDEDKEEDEDGEEEEFDDEEDDDEDEDVEGEEDEDEVSGEEEEFGHDGEVDEDD 228

Query: 142 QDEVEEWDEKEEEEE--ELEKRIEE 162
           +DE E+ DE EEEEE  + EKR  E
Sbjct: 229 EDEDEDEDEDEEEEESGKGEKRKRE 253


HSP 2 Score: 36.6 bits (83), Expect = 3.7e-01
Identity = 28/96 (29.17%), Postives = 41/96 (42.71%), Query Frame = 1 

Query: 54  RNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEY---GNQNDQKD 113
           +  DE    E+F+  E            +D +    ED  E  GE  E+   G      D
Sbjct: 179 KEEDEDGEEEEFDDEE---------DDDEDEDVEGEEDEDEVSGEEEEFGHDGE----VD 238

Query: 114 QDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWD 147
           +DD DEDE E  +E+E+E  +  +R  + D+  E D
Sbjct: 239 EDDEDEDEDEDEDEEEEESGKGEKRKRETDDEGEDD 261

[Close]
BLAST of Cla001170 vs. TrEMBL
Match: A0A0A0L728_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036520 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.9e-39
Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 1 

Query: 53  VRNHDEPQPHEQFEIMELILQLSPYH-KPH-QDIEF-SAREDTR--EDDGE---NAEYGN 112
           +RNH+EPQPHEQF+IMELILQLSPYH KPH QD EF    +D R  +DDG+   + +Y N
Sbjct: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 60

Query: 113 QNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIA 172
           +N+++D+  SDEDE+++W+EKE ED       D+ DE E WDE EEE+EELE RIEEFIA
Sbjct: 61  RNEKEDKV-SDEDEMKEWDEKEGED-------DEYDEAEGWDE-EEEDEELEMRIEEFIA 120

Query: 173 KVNKRWREEKLRDHFLIQICSSNYVSS 192
           KVNKRWREEKLRDH LIQICS+N V++
Sbjct: 121 KVNKRWREEKLRDHLLIQICSTNNVTN 138

[Close]
BLAST of Cla001170 vs. TrEMBL
Match: U6PI30_HAECO (Uncharacterized protein OS=Haemonchus contortus GN=HCOI_01413300 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 31/80 (38.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
           +D E    ED  ED+ E+ E   + D+++ ++ DE+E E+ +E+EDE+ ED E D+++DE
Sbjct: 202 EDEEEDEEEDEEEDEEEDEEVDEEEDEEEDEEEDEEEDEEEDEEEDEE-EDEEEDEEEDE 261

Query: 142 VEEWDEKEEEEEELEKRIEE 162
            E+ +E EEE+EE+++ ++E
Sbjct: 262 EEDGEEDEEEDEEVDEEVDE 280

[Close]
BLAST of Cla001170 vs. TrEMBL
Match: U6PI30_HAECO (Uncharacterized protein OS=Haemonchus contortus GN=HCOI_01413300 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDED---HEDNERDDD 141
           +D E    ED  ED+ E+ E   + D++  ++ DE+E E+ +E+ DE+    ED E D++
Sbjct: 246 EDEEEDEEEDEEEDEEEDGEEDEEEDEEVDEEVDEEEDEEEDEEVDEEVDEEEDEEVDEE 305

Query: 142 QDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRD 178
            DE E+ +E EE +EE+++ ++E   K  KR  E++  D
Sbjct: 306 VDEEEDEEEDEEVDEEVDEEVDEETKKKTKRKEEDEEED 344


HSP 2 Score: 42.0 bits (97), Expect = 9.8e-01
Identity = 18/46 (39.13%), Postives = 31/46 (67.39%), Query Frame = 1 

Query: 122 WN------EKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEE 162
           W       E+++ED ED E D+++DE E+ +E EEE+EE+++  +E
Sbjct: 38  WRYEEEVEEEDEEDEEDGEEDEEEDEEEDEEEDEEEDEEVDEEEDE 83


HSP 3 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
           +D +    ED  ED+ E+ +     D+ + +D DEDE E  +E EDED ED + D+D+DE
Sbjct: 39  EDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDED-EDEDEDEDEDE 98

Query: 142 VEEWDEKEEEEEELEKRIEEFIAKVNKRWREEK 175
            E+ DE E+E+E+ E   +E   +   RWREE+
Sbjct: 99  DEDEDEDEDEDEDDEDEDDEDEDEGRWRWREEE 130

[Close]
BLAST of Cla001170 vs. TrEMBL
Match: A0A0G2I8J9_9EURO (Uncharacterized protein OS=Emmonsia crescens UAMH 3008 GN=EMCG_07453 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
           +D +    ED  ED+ E+ +     D+ + +D DEDE E  +E EDED +D + DD+ ++
Sbjct: 61  EDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDDEDEDDEDED 120

Query: 142 VEEWDEKEEEEEELEKRI 160
              W  +EEEEEE EK++
Sbjct: 121 EGRWRWREEEEEEEEKKM 138


HSP 2 Score: 69.3 bits (168), Expect = 5.7e-09
Identity = 31/80 (38.75%), Postives = 54/80 (67.50%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
            ++ E    ED  E++GE  E G + + ++++D +E+E E+  E+E+E  E+ E ++D++E
Sbjct: 1337 EEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEE 1396

Query: 142  VEEWDEKEEEEEELEKRIEE 162
             EE +E+EEEEEE E+  EE
Sbjct: 1397 EEEEEEEEEEEEEEEEEEEE 1416

[Close]
BLAST of Cla001170 vs. TrEMBL
Match: B4YB44_MOUSE (Retrotransposon-like 1 OS=Mus musculus GN=Rtl1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
            ++ E    ED  E++GE  E G + + +++ + +E+  E+  E+EDE+ E+ E +++++E
Sbjct: 1348 EEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEEE 1407

Query: 142  VEEWDEKEEEEEELEKRIEE 162
             EE +E+EEEEEE E+  EE
Sbjct: 1408 EEEEEEEEEEEEEEEEDEEE 1427


HSP 2 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 27/83 (32.53%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 85   EFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEE 144
            E    E+  E++GE  E G + +++++D+ +E+E E+  E+E+E+ E+ E +++++E +E
Sbjct: 1366 EEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDE 1425

Query: 145  WDEKEEEE-EELEKRIEEFIAKV 167
             +E EEEE EE+   + E +A +
Sbjct: 1426 EEEDEEEEDEEVPSMVRELLAAI 1448


HSP 3 Score: 62.4 bits (150), Expect = 7.0e-07
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 1 

Query: 85   EFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHE---DNERDDDQDE 144
            E    ED  E++GE  E G + + ++++D +E+E E+  + E+E+ E   + E + +++E
Sbjct: 1329 EEEEEEDDEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEE 1388

Query: 145  VEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRD 178
             EE DE+EEEEEE E+  EE   +  +   EE+  D
Sbjct: 1389 EEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEED 1424


HSP 4 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 34/106 (32.08%), Postives = 56/106 (52.83%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDE-------------DEIEQWNEKEDE 141
            ++ E    ED  E++GE  E G + +++++DD +E             +E E   E+E E
Sbjct: 1305 EEEEGEEEEDGEEEEGEEEEDGEEEEEEEEDDEEEEGEEEEDGEEEEGEEEEDGEEEEGE 1364

Query: 142  DHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEK 175
            + ED E ++ ++E EE +E EEEEEE E   EE   +  +   EE+
Sbjct: 1365 EEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEEEEEEEEEEEE 1410


HSP 5 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 27/80 (33.75%), Postives = 51/80 (63.75%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
            +D E    ED  E++GE  E G + + ++++D +E+E E+ +++E+E  E+ + ++++ E
Sbjct: 1294 EDDEEEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEEEEEDDEEEEGEEEEDGEEEEGE 1353

Query: 142  VEEWDEKEEEEEELEKRIEE 162
             EE  E+EE EEE +   EE
Sbjct: 1354 EEEDGEEEEGEEEEDGEEEE 1373


HSP 6 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 30/88 (34.09%), Postives = 54/88 (61.36%), Query Frame = 1 

Query: 87   SAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWD 146
            S  ED  +D+ E  E G + + ++++D +E+E E+  E++ E+ E+ E DD+++E EE +
Sbjct: 1288 SETEDKEDDEEEEEEDGEEEEGEEEEDGEEEEGEE--EEDGEEEEEEEEDDEEEEGEEEE 1347

Query: 147  EKEEEEEELEKRIEEFIAKVNKRWREEK 175
            + EEEE E E+  EE   +  +   EE+
Sbjct: 1348 DGEEEEGEEEEDGEEEEGEEEEDGEEEE 1373


HSP 7 Score: 68.9 bits (167), Expect = 7.5e-09
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGN--QNDQKDQDDSDEDEIEQWNEKEDEDHED----NER 141
           ++ E    +D   DD E+ E  +  ++D+ D DD+DED  ++W E +DED ED    ++ 
Sbjct: 36  EEEELDDEDDDDLDDEEDEELDDDLEDDEDDDDDADEDFDDEWEEVDDEDFEDEDEEDDE 95

Query: 142 DDDQDEVEEWDEKEEEEEE 155
           +DD++E EEW+E+EEEEEE
Sbjct: 96  EDDEEEEEEWEEEEEEEEE 114

[Close]
BLAST of Cla001170 vs. NCBI nr
Match: gi|700200793|gb|KGN55926.1| (hypothetical protein Csa_3G036520 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 9.9e-39
Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 1 

Query: 53  VRNHDEPQPHEQFEIMELILQLSPYH-KPH-QDIEF-SAREDTR--EDDGE---NAEYGN 112
           +RNH+EPQPHEQF+IMELILQLSPYH KPH QD EF    +D R  +DDG+   + +Y N
Sbjct: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 60

Query: 113 QNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIA 172
           +N+++D+  SDEDE+++W+EKE ED       D+ DE E WDE EEE+EELE RIEEFIA
Sbjct: 61  RNEKEDKV-SDEDEMKEWDEKEGED-------DEYDEAEGWDE-EEEDEELEMRIEEFIA 120

Query: 173 KVNKRWREEKLRDHFLIQICSSNYVSS 192
           KVNKRWREEKLRDH LIQICS+N V++
Sbjct: 121 KVNKRWREEKLRDHLLIQICSTNNVTN 138

[Close]
BLAST of Cla001170 vs. NCBI nr
Match: gi|802742072|ref|XP_012087235.1| (PREDICTED: secreted acidic protein 1A [Jatropha curcas])

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 62/178 (34.83%), Postives = 92/178 (51.69%), Query Frame = 1 

Query: 6   MVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQF 65
           ++GL P+L+ +IL   S SS    +   F S  F+FS+FN+++L I +   + P   ++ 
Sbjct: 3   LLGL-PVLLFLIL---SLSSALVLN---FSSQFFLFSLFNTLVLSIIILGSNRPSSTDEI 62

Query: 66  EIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEK 125
           +          +   HQD        T   +    EY N  D    DDSD+D+  + N  
Sbjct: 63  D--------GAWFYSHQDQNDDMFHYT---NNIKDEYKNHGD----DDSDDDDCRKENYF 122

Query: 126 EDEDHEDNERDDDQDEVEEWDEKEEEEEE-----LEKRIEEFIAKVNKRWREEKLRDH 179
            D   ED++ D   D    WD+ +EEEEE     L++RIE+FIAKVNK WREE LR++
Sbjct: 123 SDGYDEDDD-DSSSDGEVGWDDDDEEEEEVIDENLQRRIEDFIAKVNKGWREEWLREN 157

[Close]
BLAST of Cla001170 vs. NCBI nr
Match: gi|821510648|gb|KKZ66848.1| (hypothetical protein EMCG_07453 [Emmonsia crescens UAMH 3008])

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
           +D +    ED  ED+ E+ +     D+ + +D DEDE E  +E EDED ED + D+D+DE
Sbjct: 39  EDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDED-EDEDEDEDEDE 98

Query: 142 VEEWDEKEEEEEELEKRIEEFIAKVNKRWREEK 175
            E+ DE E+E+E+ E   +E   +   RWREE+
Sbjct: 99  DEDEDEDEDEDEDDEDEDDEDEDEGRWRWREEE 130

[Close]
BLAST of Cla001170 vs. NCBI nr
Match: gi|821510648|gb|KKZ66848.1| (hypothetical protein EMCG_07453 [Emmonsia crescens UAMH 3008])

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1 

Query: 82  QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
           +D +    ED  ED+ E+ +     D+ + +D DEDE E  +E EDED +D + DD+ ++
Sbjct: 61  EDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDEDDEDEDDEDED 120

Query: 142 VEEWDEKEEEEEELEKRI 160
              W  +EEEEEE EK++
Sbjct: 121 EGRWRWREEEEEEEEKKM 138


HSP 2 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1 

Query: 81  HQDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQD 140
           H   E S   D  ED GE+ E  +  D+ D DD D+DE E+  E++DED ED +++D++D
Sbjct: 149 HGSDEPSVDLDNEEDGGEDNEDTDNEDKDDDDDDDDDEEEEEEEEKDEDEEDEDKEDEED 208

Query: 141 EVEEWDEKEEEEEELEKRIEE 162
           + +E DE+EEE EE ++  EE
Sbjct: 209 KEDEEDEEEEEVEEDKEDEEE 229

[Close]
BLAST of Cla001170 vs. NCBI nr
Match: gi|46309585|ref|NP_908998.1| (retrotransposon-like protein 1 [Mus musculus])

HSP 1 Score: 69.3 bits (168), Expect = 8.2e-09
Identity = 31/80 (38.75%), Postives = 54/80 (67.50%), Query Frame = 1 

Query: 82   QDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDE 141
            ++ E    ED  E++GE  E G + + ++++D +E+E E+  E+E+E  E+ E ++D++E
Sbjct: 1337 EEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEE 1396

Query: 142  VEEWDEKEEEEEELEKRIEE 162
             EE +E+EEEEEE E+  EE
Sbjct: 1397 EEEEEEEEEEEEEEEEEEEE 1416

The following BLAST results are available for this feature:
BLAST of Cla001170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RTL1_MOUSE5.1e-1138.75Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1[more]
GARP_PLAFF1.5e-1036.56Glutamic acid-rich protein OS=Plasmodium falciparum (isolate FC27 / Papua New Gu... [more]
PELP1_MACMU5.3e-0835.44Proline-, glutamic acid- and leucine-rich protein 1 OS=Macaca mulatta GN=PELP1 P... [more]
ICP22_SUHVK1.5e-0741.43Transcriptional regulator ICP22 homolog OS=Suid herpesvirus 1 (strain Kaplan) GN... [more]
AN32B_BOVIN4.5e-0741.18Acidic leucine-rich nuclear phosphoprotein 32 family member B OS=Bos taurus GN=A... [more]
BLAST of Cla001170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L728_CUCSA6.9e-3963.27Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036520 PE=4 SV=1[more]
U6PI30_HAECO1.5e-0938.75Uncharacterized protein OS=Haemonchus contortus GN=HCOI_01413300 PE=4 SV=1[more]
U6PI30_HAECO8.2e-0834.34Uncharacterized protein OS=Haemonchus contortus GN=HCOI_01413300 PE=4 SV=1[more]
A0A0G2I8J9_9EURO2.8e-0838.46Uncharacterized protein OS=Emmonsia crescens UAMH 3008 GN=EMCG_07453 PE=4 SV=1[more]
B4YB44_MOUSE1.4e-0736.25Retrotransposon-like 1 OS=Mus musculus GN=Rtl1 PE=1 SV=1[more]
BLAST of Cla001170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200793|gb|KGN55926.1|9.9e-3963.27hypothetical protein Csa_3G036520 [Cucumis sativus][more]
gi|802742072|ref|XP_012087235.1|2.1e-1234.83PREDICTED: secreted acidic protein 1A [Jatropha curcas][more]
gi|821510648|gb|KKZ66848.1|2.2e-0939.78hypothetical protein EMCG_07453 [Emmonsia crescens UAMH 3008][more]
gi|821510648|gb|KKZ66848.1|4.1e-0838.46hypothetical protein EMCG_07453 [Emmonsia crescens UAMH 3008][more]
gi|46309585|ref|NP_908998.1|8.2e-0938.75retrotransposon-like protein 1 [Mus musculus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0006629 lipid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU49543watermelon EST collection version 2.0transcribed_cluster
WMU50387watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001170Cla001170.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU49543WMU49543transcribed_cluster
WMU50387WMU50387transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 135..165
scor