Cucsa.289170 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.289170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	40S ribosomal protein S25
Location	scaffold02698 : 649648 .. 651407 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCGGCGTTCCTCTCTTCTCTTCTGCATCTTCACCAGCACATCCAACTCCGGCGGTGCAACTTCGATTCCATGGTAAAACTCTTGTCTACTCTCTTCCTTTTCCGTGAATCGGAATCTTCAGCTCACTTATTTACTCTTCCCGCTTTGATGATTATTTTAGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTGACGTTCCCGACTATATTTAGATTCATAGCTGAACTCTGTTTTGAATTATGTTAAGATTTCGTTGTATCATGCTGAGGTTACTTTTGCGAGTGTTATATCGTCTAGGCTGGAAGGGTTTTGAGAGCATTTGTTATATTGTTTGTTGTCTATGAAATGTCCCGTATGAGATGGGTTTCTGCCCCTTTTACTAAAATTTGCTTGCTTTCAAGCTTTATGAGGATTAGGATGATGAATAAGAGGAAAATGTATGGTCACCATGAACTTACAATCTTTTGTTTtGGTTtCTTTttTTTTTTtttGtAAACTTTaGATTATGCAGTTTtCTtGTTTTtAATTCTGTTTGTTGTTCATACAACAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTtGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGGTACGTTTTTCAGTCTCTTCTTATCCATAACGTGGAATATGCTTTATGATTTTTCTTGCTCGTATATTCCATCACAATGATTCTTTTCAAGTTCACGATCTGAACAGTGTTCATACTTTTTCATGAAAAACTATGTTTAAAATGTTTGATTCATTCAATACTACTTCTATCCAAACTTATGTTAGACATGAGATCCAACATTAGGTTAGTATCAAAGACCTAATTATCAATGACACAATGAATACTGCATTCTTCCTACTCCAAATATCATTTCTACAATTGTGAATATGAATTCTAGAATCAAAATCTAAGAAGTACCAATACATGAAGGATCTCCTAGTCGACTTGACACTTTTTTTTtAAAAAAaGAATGTTTAAGAACGTATATCGTTTTTATTCCTACCATAAACTCAAAGTAAATGGGTTGGTGAATCTATATGTTTAAAAATTTAGTTTGAACTATTTCATACTTAAATTTAAGTATTCTATACATGTCTAACACATTTGTCGTCTTAAAAAGTATTTGATACATGTCCAATAAATGTACCAAGATTGTGGCCGATATGTGTCAAACACATCGTTTGAACTCAGAATGATTATTTGATTCTTGGTCTTCGGTATTCTTTTATGTAGTTTGGGAACATGATTTGATTGAACTGCACGGTTGTATGTTGACAAATGATTTTATGTCATTTGAATTATCAGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCTACCAATACCTAATTTCCCTTTCATTAGTCTTTTGAGTTCGCCATGAATTAGCTTCTTTACTCTCTAGCTTTTGGCTTTTGGTTTCAAGGTCTCATTCACATGGATGCTATAATTTTGCCATTTTTGACTTGTGATATCTTTCTTGTTGATCACTATTTTTATATTTATCAATTTTAGACTTCTGAAAATTTAGTTCAAATTCACTTCTTTAAAGGCTTAA

mRNA sequence

GTTCGGCGTTCCTCTCTTCTCTTCTGCATCTTCACCAGCACATCCAACTCCGGCGGTGCAACTTCGATTCCATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCTACCAATACCTAATTTCCCTTTCATTAGTCTTTTGAGTTCGCCATGAATTAGCTTCTTTACTCTCTAGCTTTTGGCTTTTGGTTTCAAGGTCTCATTCACATGGATGCTATAATTTTGCCATTTTTGACTTGTGATATCTTTCTTGTTGATCACTATTTTTATATTTATCAATTTTAGACTTCTGAAAATTTAGTTCAAATTCACTTCTTTAAAGGCTTAA

Coding sequence (CDS)

ATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTtGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCTACCAATACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT*

Homology

[Close]

BLAST of Cucsa.289170 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-50
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-48
Identity = 93/108 (86.11%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.6e-48
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLL E PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T S+LSDRLRI+GSLAR+AI+DLMARG IRMVSAHASQ+IYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-47
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 108
           +T SILSDRLRINGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cucsa.289170 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 89/106 (83.96%), Postives = 97/106 (91.51%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRAT 107
           +T SILSDRLRINGSLAR+AI+DLM +G IRMVS H+SQ+I TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Cucsa.289170 vs. TrEMBL
Match: A0A0A0LW64_CUCSA (40S ribosomal protein S25 OS=Cucumis sativus GN=Csa_1G573590 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.2e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. TrEMBL
Match: A0A059BGE9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02690 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.5e-50
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+ EVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDRLR+NGSLARRAIKDLMARGLIRM+SAHASQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRVNGSLARRAIKDLMARGLIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. TrEMBL
Match: A0A0A0KB40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-49
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDR+R+NGSLARRAIKDLMARG IRM+SAH+SQ+IYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-49
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDRLRINGSLARRAIKDLMARG IRM+SAHASQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. TrEMBL
Match: A0A067JDX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-49
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARG IRM+SAHASQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 198.4 bits (503), Expect = 2.3e-51
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 193.7 bits (491), Expect = 5.8e-50
Identity = 93/108 (86.11%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 190.3 bits (482), Expect = 6.4e-49
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 108
           +T SILSDRLRINGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Cucsa.289170 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-30
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 24  KKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKD 83
           + +K SKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL+T SILSDRLRINGSLAR+AI+D
Sbjct: 40  ESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99

Query: 84  LMARGLIRMVSAHASQEIYTRAT 107
           LM +G IRMVS H+SQ+I TRAT
Sbjct: 100 LMVKGTIRMVSTHSSQQINTRAT 122

[Close]

BLAST of Cucsa.289170 vs. NCBI nr
Match: gi|449435736|ref|XP_004135650.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 9.0e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. NCBI nr
Match: gi|659099709|ref|XP_008450738.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 5.8e-52
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. NCBI nr
Match: gi|702422766|ref|XP_010067131.1| (PREDICTED: 40S ribosomal protein S25-2-like [Eucalyptus grandis])

HSP 1 Score: 204.5 bits (519), Expect = 9.3e-50
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+ EVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDRLR+NGSLARRAIKDLMARGLIRM+SAHASQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRVNGSLARRAIKDLMARGLIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. NCBI nr
Match: gi|657950537|ref|XP_008348335.1| (PREDICTED: 40S ribosomal protein S25-2 [Malus domestica])

HSP 1 Score: 204.5 bits (519), Expect = 9.3e-50
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDRLRINGSLARRAI++LMARGLIRMVSAHASQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMARGLIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Cucsa.289170 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 9.3e-50
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARG IRM+SAH+SQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

The following BLAST results are available for this feature:

BLAST of Cucsa.289170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS252_ARATH	4.2e-50	88.89	40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1	[more]
RS254_ARATH	1.0e-48	86.11	40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1	[more]
RS25_SOLLC	6.6e-48	87.04	40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1	[more]
RS253_ARATH	1.1e-47	86.92	40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2	[more]
RS251_ARATH	1.8e-45	83.96	40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3	[more]

BLAST of Cucsa.289170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW64_CUCSA	6.2e-53	100.00	40S ribosomal protein S25 OS=Cucumis sativus GN=Csa_1G573590 PE=4 SV=1	[more]
A0A059BGE9_EUCGR	6.5e-50	92.59	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02690 PE=4 SV=1	[more]
A0A0A0KB40_CUCSA	1.4e-49	92.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1	[more]
B9SCV0_RICCO	1.9e-49	93.52	40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=...	[more]
A0A067JDX0_JATCU	1.9e-49	93.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1	[more]

BLAST of Cucsa.289170 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21580.1	2.3e-51	88.89	Ribosomal protein S25 family protein	[more]
AT4G39200.1	5.8e-50	86.11	Ribosomal protein S25 family protein	[more]
AT4G34555.1	6.4e-49	86.92	Ribosomal protein S25 family protein	[more]
AT2G16360.1	6.6e-30	75.90	Ribosomal protein S25 family protein	[more]

BLAST of Cucsa.289170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435736\|ref\|XP_004135650.1\|	9.0e-53	100.00	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus]	[more]
gi\|659099709\|ref\|XP_008450738.1\|	5.8e-52	99.07	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]	[more]
gi\|702422766\|ref\|XP_010067131.1\|	9.3e-50	92.59	PREDICTED: 40S ribosomal protein S25-2-like [Eucalyptus grandis]	[more]
gi\|657950537\|ref\|XP_008348335.1\|	9.3e-50	93.52	PREDICTED: 40S ribosomal protein S25-2 [Malus domestica]	[more]
gi\|659113490\|ref\|XP_008456601.1\|	9.3e-50	94.44	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.289170.1	Cucsa.289170.1	mRNA
Cucsa.289170.2	Cucsa.289170.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 40..77 score: 9.0
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 5..76 score: 1.6
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 7..77 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.289170	Cla011300	Watermelon (97103) v1	cgywmB531
Cucsa.289170	Csa1G573590	Cucumber (Chinese Long) v2	cgycuB414
Cucsa.289170	MELO3C015373	Melon (DHL92) v3.5.1	cgymeB481
Cucsa.289170	ClCG03G016480	Watermelon (Charleston Gray)	cgywcgB505
Cucsa.289170	CSPI01G27190	Wild cucumber (PI 183967)	cgycpiB437
Cucsa.289170	CmaCh10G010950	Cucurbita maxima (Rimu)	cgycmaB0809
Cucsa.289170	CmoCh10G011720	Cucurbita moschata (Rifu)	cgycmoB0802
Cucsa.289170	Lsi06G001830	Bottle gourd (USVL1VR-Ls)	cgylsiB471
Cucsa.289170	Cp4.1LG11g09220	Cucurbita pepo (Zucchini)	cgycpeB0766
Cucsa.289170	MELO3C015373.2	Melon (DHL92) v3.6.1	cgymedB480
Cucsa.289170	CsaV3_1G039500	Cucumber (Chinese Long) v3	cgycucB446
Cucsa.289170	Cla97C03G066790	Watermelon (97103) v2	cgywmbB506
Cucsa.289170	Carg27089	Silver-seed gourd	carcgyB0867

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.289170	Watermelon (Charleston Gray)	cgywcgB504
Cucsa.289170	Watermelon (97103) v1	cgywmB533