CmaCh10G010950 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh10G010950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description40S ribosomal protein S25
LocationCma_Chr10 : 7308671 .. 7310762 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGCTAAATTCATTCCGCGTGTCTCGTCTCTTTCCTTCTGCAGCGGCATCTTCTTCAGCTCAACCAACTCCGGCGGTGCAACTTTGATACGATGGTAAAATTTCGGTCTACTTTTTTTATTTTTGGTATCTGGTTTTACAGTTTGGTGTTTTATTCTTTTTGTTTTGATTAATCTAGGCGCCGAAGAAGGATAAAGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGGTCACATTCTTCAAACTATATATTTTACTTTATTTAAATTCGTAGCTGTATTATAGTAGGTGAACTGTATTTCGAATCATGCCGGAGTTATTGTTAGGAATGAGGTTATTTCAACTCTTTATTGAAGTATTTGGTTCTCCGACTATTTCTCTGTTACAAGTGGTGTAGATCTTGTTTTTTTATGTTTGGATATTGCTGAGGTTATTTTTGGGAATGAGATTGTTTCTCTTCCTTGTCTCAATTTGTCAGATTTCGAAGTTTAATTGCATGTCTAATCCCTCCTCAAGGTGCCCTCGAGGCCTAAATCTCAAACGATTTTGAAAATATTATAGATTGTTGTTTAGATGCATCTATGATACTATGATGTCTTATGTGGAAAAGGCTTCTATCACTTCTACTAAATTTTTGTTTTGTATTAAACTTTATGTGGACAATCATGATACTTCGAAGAAACTAAAAATGAGGAAAATTAGTGCTCTGGTGCTCATGAACTTGTAATTTTGGTTTTCGGTTCGTTTTTGGAAACCAAAATCGCGATTGTGATTTCATGGTAGAATATCTTGTGCTAATTAGATTTCTTGTGAACTGTAAAATTTTGATTCTAAATGCTAAGATTGTGCAGTTTTCTCATTTTTATTTTGTTTGTTCATACAACAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACATATGACAAACTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGGTACGTTTTTAAACCTCGTCTCTTCCATAATATAGAATTTTTTCAATGATTTTTCTTGCTTGCATACTCCTTCACTATGATTTAATTCTAGTTATTTGTCACTTATGACCTTGATACGATCAATATCTATCCTTTTTCATTCTAACCTATGTTTAAGACATTCAATCCATTCATTCTAAGATGCACACTTTAAAAACATTGTGCTAGCACTTGTTCCACACAGATCAAACACTTGTTAGCCCAATGGATATGTGCTACAACACTGGTTTGACCAAATCATCATGCTCGTCCAACATTTATTAGATAATTGAACATTTGTTAAGTAAATTAAATCGACACATAATAATATATAACCAATAATAAATTCGTAACATACAAATGAACAAACCTAACAACTTCGAATTTTCTTCTGACATGAATATGATATATTTTTAGAAAGTGTGTATTTTATTAATCATTTTATAGACATGTCCTATATTTTCTGAAAATGGTGACATTGTGTACATGTCCGTATCTGTGTCTTTTAGCATTCAATTTACTAGTGAACTCTGTTTATTCTGAACTCCCTATATCATATCTATAAATATAGGAAACCCCATGATTTCTTTTTACGAGTTCGCACTCTTGAAATAAAAAAGAACTTCAGAGTTCTTCTGTATTCGTGTTAAATTTTCAGATCAATGGATCTCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAAAATTCCTTCAATCTTTAGAGTTGCCTGCCATGAATTAGCGTCGTTACTCTAGTTTTTGCTTCTTTGTTTCAATGTCTCCTTTAGATGGATGCTATAATTTTGCAATTTTTGTCTGACGATATCTTCCATGTTAATCACTACTTTTAATATTTATCAAGTTTCCAAACATTCTATTTTGAATCTGCACTCTAAACTTGTCATTAGACTTTGAAATATTTGAAACACAATTAAAAAGGTTGCTCTGTTTGGTTGTTCTTA

mRNA sequence

TCGCTAAATTCATTCCGCGTGTCTCGTCTCTTTCCTTCTGCAGCGGCATCTTCTTCAGCTCAACCAACTCCGGCGGTGCAACTTTGATACGATGGCGCCGAAGAAGGATAAAGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACATATGACAAACTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCTCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAAAATTCCTTCAATCTTTAGAGTTGCCTGCCATGAATTAGCGTCGTTACTCTAGTTTTTGCTTCTTTGTTTCAATGTCTCCTTTAGATGGATGCTATAATTTTGCAATTTTTGTCTGACGATATCTTCCATGTTAATCACTACTTTTAATATTTATCAAGTTTCCAAACATTCTATTTTGAATCTGCACTCTAAACTTGTCATTAGACTTTGAAATATTTGAAACACAATTAAAAAGGTTGCTCTGTTTGGTTGTTCTTA

Coding sequence (CDS)

ATGGCGCCGAAGAAGGATAAAGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACATATGACAAACTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCTCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Homology
[Close]
BLAST of CmaCh10G010950 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-47
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-46
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 6.8e-45
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVSAH SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of CmaCh10G010950 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-45
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLL E PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPS+LSDRLRI+GSLAR+AI+DLMARG IRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-42
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRAT 107
           +TPSILSDRLRINGSLAR+AI+DLM +G IRMVS H SQ+I TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]
BLAST of CmaCh10G010950 vs. TrEMBL
Match: A0A0A0LW64_CUCSA (40S ribosomal protein S25 OS=Cucumis sativus GN=Csa_1G573590 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.8e-48
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. TrEMBL
Match: A0A0A0KB40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 8.6e-47
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARG IRM+SAH SQ+IYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. TrEMBL
Match: A0A059BGE9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02690 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 8.6e-47
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+ EVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDRLR+NGSLARRAIKDLMARGLIRM+SAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRVNGSLARRAIKDLMARGLIRMISAHASQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. TrEMBL
Match: A0A067JDX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-46
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARG IRM+SAH SQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-46
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDRLRINGSLARRAIKDLMARG IRM+SAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 189.1 bits (479), Expect = 1.4e-48
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 184.5 bits (467), Expect = 3.5e-47
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 181.0 bits (458), Expect = 3.8e-46
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVSAH SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of CmaCh10G010950 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-29
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 1 

Query: 24  KKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLRINGSLARRAIKD 83
           + +K SKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL+TPSILSDRLRINGSLAR+AI+D
Sbjct: 40  ESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99

Query: 84  LMARGLIRMVSAHGSQEIYTRAT 107
           LM +G IRMVS H SQ+I TRAT
Sbjct: 100 LMVKGTIRMVSTHSSQQINTRAT 122

[Close]
BLAST of CmaCh10G010950 vs. NCBI nr
Match: gi|659099709|ref|XP_008450738.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 7.8e-49
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. NCBI nr
Match: gi|449435736|ref|XP_004135650.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-47
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 5.6e-47
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARG IRM+SAH SQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. NCBI nr
Match: gi|702422766|ref|XP_010067131.1| (PREDICTED: 40S ribosomal protein S25-2-like [Eucalyptus grandis])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 100/108 (92.59%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+ EVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDRLR+NGSLARRAIKDLMARGLIRM+SAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRVNGSLARRAIKDLMARGLIRMISAHASQQIYTRATNT 108

[Close]
BLAST of CmaCh10G010950 vs. NCBI nr
Match: gi|449446287|ref|XP_004140903.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-46
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARG IRM+SAH SQ+IYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

The following BLAST results are available for this feature:
BLAST of CmaCh10G010950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS252_ARATH2.5e-4789.8140S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1[more]
RS254_ARATH6.2e-4687.0440S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1[more]
RS253_ARATH6.8e-4587.8540S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2[more]
RS25_SOLLC8.9e-4587.0440S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1[more]
RS251_ARATH1.1e-4284.9140S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3[more]
BLAST of CmaCh10G010950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW64_CUCSA7.8e-4898.1540S ribosomal protein S25 OS=Cucumis sativus GN=Csa_1G573590 PE=4 SV=1[more]
A0A0A0KB40_CUCSA8.6e-4793.52Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1[more]
A0A059BGE9_EUCGR8.6e-4792.59Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02690 PE=4 SV=1[more]
A0A067JDX0_JATCU2.5e-4693.52Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1[more]
B9SCV0_RICCO2.5e-4693.5240S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=... [more]
BLAST of CmaCh10G010950 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21580.11.4e-4889.81 Ribosomal protein S25 family protein[more]
AT4G39200.13.5e-4787.04 Ribosomal protein S25 family protein[more]
AT4G34555.13.8e-4687.85 Ribosomal protein S25 family protein[more]
AT2G16360.11.9e-2977.11 Ribosomal protein S25 family protein[more]
BLAST of CmaCh10G010950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099709|ref|XP_008450738.1|7.8e-4999.07PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo][more]
gi|449435736|ref|XP_004135650.1|1.1e-4798.15PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus][more]
gi|659113490|ref|XP_008456601.1|5.6e-4795.37PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo][more]
gi|702422766|ref|XP_010067131.1|1.2e-4692.59PREDICTED: 40S ribosomal protein S25-2-like [Eucalyptus grandis][more]
gi|449446287|ref|XP_004140903.1|1.2e-4693.52PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004977Ribosomal_S25
IPR011991Winged helix-turn-helix DNA-binding domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G010950.1CmaCh10G010950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004977Ribosomal protein S25PRODOMPD012268coord: 40..107
score: 1.0
IPR004977Ribosomal protein S25PANTHERPTHR12850FAMILY NOT NAMEDcoord: 5..108
score: 5.0
IPR004977Ribosomal protein S25PFAMPF03297Ribosomal_S25coord: 8..105
score: 2.2
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 51..97
score: 7.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh10G010950Cucsa.289170Cucumber (Gy14) v1cgycmaB0809
CmaCh10G010950Cla011300Watermelon (97103) v1cmawmB049
CmaCh10G010950Csa1G573590Cucumber (Chinese Long) v2cmacuB068
CmaCh10G010950MELO3C015373Melon (DHL92) v3.5.1cmameB070
CmaCh10G010950ClCG03G016480Watermelon (Charleston Gray)cmawcgB056
CmaCh10G010950CSPI01G27190Wild cucumber (PI 183967)cmacpiB066
CmaCh10G010950CmoCh10G011720Cucurbita moschata (Rifu)cmacmoB067
CmaCh10G010950Lsi06G001830Bottle gourd (USVL1VR-Ls)cmalsiB079
CmaCh10G010950Cp4.1LG11g09220Cucurbita pepo (Zucchini)cmacpeB077
CmaCh10G010950MELO3C015373.2Melon (DHL92) v3.6.1cmamedB073
CmaCh10G010950CsaV3_1G039500Cucumber (Chinese Long) v3cmacucB0075
CmaCh10G010950Cla97C03G066790Watermelon (97103) v2cmawmbB062
CmaCh10G010950Bhi02G001761Wax gourdcmawgoB0079
CmaCh10G010950CsGy1G026390Cucumber (Gy14) v2cgybcmaB022
CmaCh10G010950Carg27089Silver-seed gourdcarcmaB1061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh10G010950Cucumber (Gy14) v2cgybcmaB016
CmaCh10G010950Melon (DHL92) v3.6.1cmamedB071
CmaCh10G010950Cucumber (Chinese Long) v3cmacucB0069
CmaCh10G010950Watermelon (97103) v2cmawmbB061
CmaCh10G010950Cucumber (Gy14) v1cgycmaB0517
CmaCh10G010950Wild cucumber (PI 183967)cmacpiB061
CmaCh10G010950Cucumber (Chinese Long) v2cmacuB059
CmaCh10G010950Melon (DHL92) v3.5.1cmameB068
CmaCh10G010950Watermelon (Charleston Gray)cmawcgB055
CmaCh10G010950Watermelon (97103) v1cmawmB047
CmaCh10G010950Bottle gourd (USVL1VR-Ls)cmalsiB076