CsaV3_1G039500 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G039500
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S25
Location	chr1 : 24884528 .. 24886597 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAATTGGGCCAATATTCAGCCCATTTAGTAAATTTCGAAACCCTACTTTGAGGGTTTTTATTGACCTAAGTCTCATACATCTCTGAATTCGTTCGGCGTTCCTCTCTTCTCTTCTGCATCTTCACCAGCACATCCAACTCCGGCGGTGCAACTTCGATTCCATGGTAAAACTCTTGTCTACTCTCTTCCTTTTCCGTGAATCGGAATCTTCAGCTCACTTATTTACTCTTCCCGCTTTGATGATTATTTTAGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTGACGTTCCCGACTATATTTAGATTCATAGCTGAACTCTGTTTTGAATTATGTTAAGATTTCGTTGTATCATGCTGAGGTTACTTTTGCGAGTGTTATATCGTCTAGGCTGGAAGGGTTTTGAGAGCATTTGTTATATTGTTTGTTTAGTTTGTCTATGATAGTATGATGTCCCGTATGAGATGGGTTTCTGCCCCTTTTACTAAAATTTGCTTGCTTTCAAGCTCTATGAGGATTAGGATGATGAATAAGAGGAAAATGTATGTGGTCACCATGAACTTACAATCTTTTGTTTTGGTTTTTTTTTTTTTTTTTGTAAATTTTAGATTATGCAGTTTTCTTGTTTCTAATTCTGTTTGTTGTTCATACAACAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGGTACGTTTTTCAGTCTCTTCTTATCCATAACGTGGAATATGCTTTCTGATTTTTCTTGCTCGTATATTCCATCACAATGATTCTTTTCAAGTTCACGATCTGAACAGTGTTCATACTTTTTCATGAAAAACTATGTTTAAAATGTTTGATTCATTCAATACTACTTCTATCCAAACTTATGTTAGACATGAGATCCAACATTAGGTTAGTATCAAAGACCTAATTATCAATGACACAATGAATACTGCATTCTTCCTACTCCAAATATCATTTCTACAATTGTGAATATGAATTCTAGAATCAAAATCTAAGAAGTACCAATACATGAAGGATCTCCTAGTCGACTTGACACTTTTTTTTTAAAAAAAAAGGATGTTTAAGAACGTATATCGTTTTTATACCTACCATAAACTCAAAGTAAATGGGTTGGTGAATCAATATGTTTAAAAATTTAGTTTGAACTATTTCATACTTAAATTTAAGTATTCTATACATGTCTAACACATTTGTCGTCTTAAAAAGTATTTGATACATGTCCAATAAATGTACCAAGAGTTGTGGCCGATATGTGTCAAACACATCATTTGAACTCAGAATGATTATTTGATTCTTGGTCTTCGGTATTCTTTTATGTAGTTTGGGAACATGATTTGATTGAACTGCACGGTTGTATGTTGACAAATCATTTTATGTCATTTGAATTATCAGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATTTACACAAGGGCTACCAATACCTAATTTCCCTTTCATTAGTCTTTTGAGTTCGCCATGAATTAGCTTCTTTACTCTCTAGCTTTTGGCTTTTGGTTTCAAGGTCTCATTCACATGGATGCTATAATTTTGCCATTTTTGACTTGTGATATCTTTCTTGTTGATCACTATTTTTATATTTATCAATTTTAGACTTCTGAAAATTTAGTTCAAATTCACTTCTTTAAAGGCTTAATTTCATCTTTGTTGTGCAGTTTGGTTAACACCCAATAGGAACGTGTCATCTTTGTAGAAAGACTCAAACCTAAATACATATAATATAGCTAAAGCAAAAATGAGATCATTACAAAGTGTTTAGGGCATTTTTTATGTAATACGAGTTCAAATAAAAGAAAATATATAATACCAATGAATTATATACTTCAAATGTTCACTG

mRNA sequence

ATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATTTACACAAGGGCTACCAATACCTAA

Coding sequence (CDS)

ATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATTTACACAAGGGCTACCAATACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT

Homology

[Close]

BLAST of CsaV3_1G039500 vs. NCBI nr
Match: XP_004135650.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus] >KGN66140.1 40S ribosomal protein S25 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 5.1e-36
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. NCBI nr
Match: XP_016900931.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 3.3e-35
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. NCBI nr
Match: XP_022150617.1 (40S ribosomal protein S25-2-like [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 3.3e-35
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. NCBI nr
Match: XP_022961406.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S ribosomal protein S25-2-like [Cucurbita maxima] >XP_023545343.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 9.6e-35
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. NCBI nr
Match: XP_022945101.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S ribosomal protein S25-2 [Cucurbita maxima] >XP_023541368.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVS+H+SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. TAIR10
Match: AT2G21580.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-35
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. TAIR10
Match: AT4G39200.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 140.6 bits (353), Expect = 5.8e-34
Identity = 93/108 (86.11%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. TAIR10
Match: AT4G34555.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 137.1 bits (344), Expect = 6.4e-33
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 108
           +T SILSDRLRINGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CsaV3_1G039500 vs. TAIR10
Match: AT2G16360.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 123.6 bits (309), Expect = 7.3e-29
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 29  SKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARG 88
           SKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL+T SILSDRLRINGSLAR+AI+DLM +G
Sbjct: 45  SKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKG 104

Query: 89  LIRMVSAHASQEIYTRAT 107
            IRMVS H+SQ+I TRAT
Sbjct: 105 TIRMVSTHSSQQINTRAT 122

[Close]

BLAST of CsaV3_1G039500 vs. Swiss-Prot
Match: sp|Q9SIK2|RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.2e-34
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. Swiss-Prot
Match: sp|Q9T029|RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-32
Identity = 93/108 (86.11%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDR+RINGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. Swiss-Prot
Match: sp|Q8GYL5|RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-31
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 108
           +T SILSDRLRINGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CsaV3_1G039500 vs. Swiss-Prot
Match: sp|P46301|RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-31
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK +XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFD+ TYDKLL E PKYKL
Sbjct: 1   MAPKKAQXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T S+LSDRLRI+GSLAR+AI+DLMARG IRMVSAHASQ+IYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. Swiss-Prot
Match: sp|Q9SIW5|RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-29
Identity = 89/106 (83.96%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRAT 107
           +T SILSDRLRINGSLAR+AI+DLM +G IRMVS H+SQ+I TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of CsaV3_1G039500 vs. TrEMBL
Match: tr|A0A0A0LW64|A0A0A0LW64_CUCSA (40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_1G573590 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-36
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. TrEMBL
Match: tr|A0A1S4DY71|A0A1S4DY71_CUCME (40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103492227 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.2e-35
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. TrEMBL
Match: tr|A0A1S3C4W3|A0A1S3C4W3_CUCME (40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103496510 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-33
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARG IRM+SAH+SQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. TrEMBL
Match: tr|A0A2C9VYF6|A0A2C9VYF6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G003200 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.9e-33
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARG IRM+SAHASQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGAIRMISAHASQQIYTRATNT 108

[Close]

BLAST of CsaV3_1G039500 vs. TrEMBL
Match: tr|A0A1R3K668|A0A1R3K668_COCAP (Ribosomal protein S25 OS=Corchorus capsularis OX=210143 GN=CCACVL1_02790 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.8e-33
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 109
           +T SILSDRLRINGSLARRAIKDLMARG IRM+SAHASQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGAIRMISAHASQQIYTRATNT 108

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135650.1	5.1e-36	100.00	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus] >KGN66140.1 40S ri...	[more]
XP_016900931.1	3.3e-35	99.07	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]	[more]
XP_022150617.1	3.3e-35	98.15	40S ribosomal protein S25-2-like [Momordica charantia]	[more]
XP_022961406.1	9.6e-35	98.15	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S riboso...	[more]
XP_022945101.1	1.6e-34	97.22	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S riboso...	[more]

BLAST of CsaV3_1G039500 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21580.1	2.4e-35	88.89	Ribosomal protein S25 family protein	[more]
AT4G39200.1	5.8e-34	86.11	Ribosomal protein S25 family protein	[more]
AT4G34555.1	6.4e-33	86.92	Ribosomal protein S25 family protein	[more]
AT2G16360.1	7.3e-29	79.49	Ribosomal protein S25 family protein	[more]

BLAST of CsaV3_1G039500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SIK2\|RS252_ARATH	4.2e-34	88.89	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
sp\|Q9T029\|RS254_ARATH	1.0e-32	86.11	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
sp\|Q8GYL5\|RS253_ARATH	1.2e-31	86.92	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
sp\|P46301\|RS25_SOLLC	2.0e-31	87.04	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
sp\|Q9SIW5\|RS251_ARATH	1.8e-29	83.96	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of CsaV3_1G039500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LW64\|A0A0A0LW64_CUCSA	3.4e-36	100.00	40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_1G573590 PE=4 SV=1	[more]
tr\|A0A1S4DY71\|A0A1S4DY71_CUCME	2.2e-35	99.07	40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103492227 PE=4 SV...	[more]
tr\|A0A1S3C4W3\|A0A1S3C4W3_CUCME	3.5e-33	94.44	40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103496510 PE=4 SV...	[more]
tr\|A0A2C9VYF6\|A0A2C9VYF6_MANES	5.9e-33	94.44	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G003200 PE=4 SV=...	[more]
tr\|A0A1R3K668\|A0A1R3K668_COCAP	7.8e-33	92.59	Ribosomal protein S25 OS=Corchorus capsularis OX=210143 GN=CCACVL1_02790 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039500.1	CsaV3_1G039500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.2780		coord: 21..108 e-value: 6.7E-38 score: 130.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR12850:SF13	SUBFAMILY NOT NAMED	coord: 1..108
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 8..105 e-value: 6.1E-41 score: 138.6
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 1..108
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 40..107 e-value: 1.0E-28 score: 308.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G039500	CSPI01G27190	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G039500	Cucsa.289170	Cucumber (Gy14) v1	cgycucB446
CsaV3_1G039500	CmaCh10G010950	Cucurbita maxima (Rimu)	cmacucB0075
CsaV3_1G039500	CmoCh10G011720	Cucurbita moschata (Rifu)	cmocucB0064
CsaV3_1G039500	Cp4.1LG11g09220	Cucurbita pepo (Zucchini)	cpecucB0099
CsaV3_1G039500	CsGy1G026390	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G039500	Carg27089	Silver-seed gourd	carcucB0805
CsaV3_1G039500	Cla011300	Watermelon (97103) v1	cucwmB025
CsaV3_1G039500	MELO3C015373	Melon (DHL92) v3.5.1	cucmeB042
CsaV3_1G039500	ClCG03G016480	Watermelon (Charleston Gray)	cucwcgB050
CsaV3_1G039500	Lsi06G001830	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G039500	MELO3C015373.2	Melon (DHL92) v3.6.1	cucmedB039
CsaV3_1G039500	Cla97C03G066790	Watermelon (97103) v2	cucwmbB041
CsaV3_1G039500	Bhi02G001761	Wax gourd	cucwgoB113

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G039500	Cucumber (Chinese Long) v3	cuccucB015
CsaV3_1G039500	Cucurbita pepo (Zucchini)	cpecucB0438
CsaV3_1G039500	Wild cucumber (PI 183967)	cpicucB079
CsaV3_1G039500	Bottle gourd (USVL1VR-Ls)	cuclsiB015
CsaV3_1G039500	Melon (DHL92) v3.5.1	cucmeB078
CsaV3_1G039500	Melon (DHL92) v3.6.1	cucmedB072
CsaV3_1G039500	Watermelon (Charleston Gray)	cucwcgB033
CsaV3_1G039500	Watermelon (97103) v1	cucwmB078