CsGy1G026390 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G026390
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	40S ribosomal protein S25-2
Location	Chr1 : 24978456 .. 24980510 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTGGGCCAATATTCAGCCCATTTAGTAAATTTCGAAACCCTACTTTGAGGGTTTTTATTGACCTAAGTCTCATACATCTCTGAATTCGTTCGGCGTTCCTCTCTTCTCTTCTGCATCTTCACCAGCACATCCAACTCCGGCGGTGCAACTTCGATTCCATGGTAAAACTCTTGTCTACTCTCTTCCTTTTCCGTGAATCGGAATCTTCAGCTCACTTATTTACTCTTCCCGCTTTGATGATTATTTTAGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTGACGTTCCCGACTATATTTAGATTCATAGCTGAACTCTGTTTTGAATTATGTTAAGATTTCGTTGTATCATGCTGAGGTTACTTTTGCGAGTGTTATATCGTCTAGGCTGGAAGGGTTTTGAGAGCATTTGTTATATTGTTTGTTGTCTATGAAATGTCCCGTATGAGATGGGTTTCTGCCCCTTTTACTAAAATTTGCTTGCTTTCAAGCTTTATGAGGATTAGGATGATGAATAAGAGGAAAATGTATGGTCACCATGAACTTACAATCTTTTGTTTTGGTTTCTTTTTTTTTTTTTTTTGTAAACTTTAGATTATGCAGTTTTCTTGTTTTTAATTCTGTTTGTTGTTCATACAACAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGGTACGTTTTTCAGTCTCTTCTTATCCATAACGTGGAATATGCTTTATGATTTTTCTTGCTCGTATATTCCATCACAATGATTCTTTTCAAGTTCACGATCTGAACAGTGTTCATACTTTTTCATGAAAAACTATGTTTAAAATGTTTGATTCATTCAATACTACTTCTATCCAAACTTATGTTAGACATGAGATCCAACATTAGGTTAGTATCAAAGACCTAATTATCAATGACACAATGAATACTGCATTCTTCCTACTCCAAATATCATTTCTACAATTGTGAATATGAATTCTAGAATCAAAATCTAAGAAGTACCAATACATGAAGGATCTCCTAGTCGACTTGACACTTTTTTTTTAAAAAAAGAATGTTTAAGAACGTATATCGTTTTTATTCCTACCATAAACTCAAAGTAAATGGGTTGGTGAATCTATATGTTTAAAAATTTAGTTTGAACTATTTCATACTTAAATTTAAGTATTCTATACATGTCTAACACATTTGTCGTCTTAAAAAGTATTTGATACATGTCCAATAAATGTACCAAGATTGTGGCCGATATGTGTCAAACACATCGTTTGAACTCAGAATGATTATTTGATTCTTGGTCTTCGGTATTCTTTTATGTAGTTTGGGAACATGATTTGATTGAACTGCACGGTTGTATGTTGACAAATGATTTTATGTCATTTGAATTATCAGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCTACCAATACCTAATTTCCCTTTCATTAGTCTTTTGAGTTCGCCATGAATTAGCTTCTTTACTCTCTAGCTTTTGGCTTTTGGTTTCAAGGTCTCATTCACATGGATGCTATAATTTTGCCATTTTTGACTTGTGATATCTTTCTTGTTGATCACTATTTTTATATTTATCAATTTTAGACTTCTGAAAATTTAGTTCAAATTCACTTCTTTAAAGGCTTAATTTCATCTTTGTTGTGCAGTTTGGCTAACACCCAATAGAAACGTGTCATCTTTGTAGAAAGACTCAAACCTAAATACATATAATATAGCTAAAGCAAAAATGAGATCATTACAAAGTGTTTAGGGCATTTTTTATGTAATACGAGTTCAAATAAAAGAAAATATATAATACCAATGAATTATATACTTCAAATGTTCAC

mRNA sequence

ATGAAAATTGGGCCAATATTCAGCCCATTTAGTAAATTTCGAAACCCTACTTTGAGGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCTACCAATACCTAATTTCCCTTTCATTAGTCTTTTGAGTTCGCCATGAATTAGCTTCTTTACTCTCTAGCTTTTGGCTTTTGGTTTCAAGGTCTCATTCACATGGATGCTATAATTTTGCCATTTTTGACTTGTGATATCTTTCTTGTTGATCACTATTTTTATATTTATCAATTTTAGACTTCTGAAAATTTAGTTCAAATTCACTTCTTTAAAGGCTTAATTTCATCTTTGTTGTGCAGTTTGGCTAACACCCAATAGAAACGTGTCATCTTTGTAGAAAGACTCAAACCTAAATACATATAATATAGCTAAAGCAAAAATGAGATCATTACAAAGTGTTTAGGGCATTTTTTATGTAATACGAGTTCAAATAAAAGAAAATATATAATACCAATGAATTATATACTTCAAATGTTCAC

Coding sequence (CDS)

ATGAAAATTGGGCCAATATTCAGCCCATTTAGTAAATTTCGAAACCCTACTTTGAGGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCCAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGTAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACTTATGACAAGCTTCTTGTTGAAGTTCCCAAGTACAAACTTGTCACTCTTTCAATCTTGTCCGATAGATTGAGGATCAATGGATCTCTTGCAAGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCTACCAATACCTAA

Protein sequence

MKIGPIFSPFSKFRNPTLRAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT

Homology

[Close]

BLAST of CsGy1G026390 vs. NCBI nr
Match: XP_004135650.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus] >KGN66140.1 40S ribosomal protein S25 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV
Sbjct: 2   APKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 62  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. NCBI nr
Match: XP_016900931.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV
Sbjct: 2   APKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. NCBI nr
Match: XP_022150617.1 (40S ribosomal protein S25-2-like [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV
Sbjct: 2   APKKDKAXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. NCBI nr
Match: XP_022961406.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S ribosomal protein S25-2-like [Cucurbita maxima] >XP_023545343.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 3.6e-33
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV
Sbjct: 2   APKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. NCBI nr
Match: XP_022945101.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S ribosomal protein S25-2 [Cucurbita maxima] >XP_023541368.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 6.1e-33
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV
Sbjct: 2   APKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDRLRINGSLARRAIKDLMARGLIRMVS+H+SQEIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. TAIR10
Match: AT2G21580.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 140.2 bits (352), Expect = 8.7e-34
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL+
Sbjct: 2   APKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLI 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDR+RINGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. TAIR10
Match: AT4G39200.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-32
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+
Sbjct: 2   APKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLI 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDR+RINGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. TAIR10
Match: AT4G34555.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-31
Identity = 91/106 (85.85%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+
Sbjct: 2   APKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLI 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 126
           T SILSDRLRINGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 62  TPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CsGy1G026390 vs. TAIR10
Match: AT2G16360.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-28
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 47  SKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARG 106
           SKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL+T SILSDRLRINGSLAR+AI+DLM +G
Sbjct: 45  SKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKG 104

Query: 107 LIRMVSAHASQEIYTRAT 125
            IRMVS H+SQ+I TRAT
Sbjct: 105 TIRMVSTHSSQQINTRAT 122

[Close]

BLAST of CsGy1G026390 vs. Swiss-Prot
Match: sp|Q9SIK2|RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-32
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL+
Sbjct: 2   APKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLI 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDR+RINGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. Swiss-Prot
Match: sp|Q9T029|RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-31
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+
Sbjct: 2   APKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLI 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDR+RINGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. Swiss-Prot
Match: sp|P46301|RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 47  SKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARG 106
           SKGKQKEKVNNMVLFD+ TYDKLL E PKYKL+T S+LSDRLRI+GSLAR+AI+DLMARG
Sbjct: 29  SKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARG 88

Query: 107 LIRMVSAHASQEIYTRATNT 127
            IRMVSAHASQ+IYTRATNT
Sbjct: 89  SIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. Swiss-Prot
Match: sp|Q8GYL5|RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-30
Identity = 91/106 (85.85%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+
Sbjct: 2   APKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLI 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 126
           T SILSDRLRINGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 62  TPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CsGy1G026390 vs. Swiss-Prot
Match: sp|Q9SIW5|RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-28
Identity = 87/105 (82.86%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD  XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL+
Sbjct: 2   APKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLI 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRAT 125
           T SILSDRLRINGSLAR+AI+DLM +G IRMVS H+SQ+I TRAT
Sbjct: 62  TPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of CsGy1G026390 vs. TrEMBL
Match: tr|A0A0A0LW64|A0A0A0LW64_CUCSA (40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_1G573590 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV
Sbjct: 2   APKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 62  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. TrEMBL
Match: tr|A0A1S4DY71|A0A1S4DY71_CUCME (40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103492227 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.1e-34
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV
Sbjct: 2   APKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. TrEMBL
Match: tr|A0A1S3C4W3|A0A1S3C4W3_CUCME (40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103496510 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 20  APKKDXXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLV 79
           APKKD XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKLV
Sbjct: 2   APKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLV 61

Query: 80  TLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 127
           T SILSDRLRINGSLARRAIKDLMARG IRM+SAH+SQ+IYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. TrEMBL
Match: tr|A0A059BGE9|A0A059BGE9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02690 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 47  SKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARG 106
           SKGKQKEKVNNMVLFDQGTYDKL+ EVPKYKL+T SILSDRLR+NGSLARRAIKDLMARG
Sbjct: 29  SKGKQKEKVNNMVLFDQGTYDKLVSEVPKYKLITPSILSDRLRVNGSLARRAIKDLMARG 88

Query: 107 LIRMVSAHASQEIYTRATNT 127
           LIRM+SAHASQ+IYTRATNT
Sbjct: 89  LIRMISAHASQQIYTRATNT 108

[Close]

BLAST of CsGy1G026390 vs. TrEMBL
Match: tr|A0A2K3LH00|A0A2K3LH00_TRIPR (40S ribosomal protein s25-2-like OS=Trifolium pratense OX=57577 GN=L195_g033777 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 47  SKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTLSILSDRLRINGSLARRAIKDLMARG 106
           SKGKQKEKVNNMVLFDQGTYDKLL E PKYKL+T S+LSDRLRINGSLARRAIKDLMARG
Sbjct: 29  SKGKQKEKVNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIKDLMARG 88

Query: 107 LIRMVSAHASQEIYTRATNT 127
           LIR+VSAHASQ+IYTRATNT
Sbjct: 89  LIRLVSAHASQQIYTRATNT 108

The following BLAST results are available for this feature:

BLAST of CsGy1G026390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135650.1	1.9e-34	99.07	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus] >KGN66140.1 40S ri...	[more]
XP_016900931.1	1.2e-33	98.13	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]	[more]
XP_022150617.1	1.2e-33	97.20	40S ribosomal protein S25-2-like [Momordica charantia]	[more]
XP_022961406.1	3.6e-33	97.20	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S riboso...	[more]
XP_022945101.1	6.1e-33	96.26	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S riboso...	[more]

BLAST of CsGy1G026390 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21580.1	8.7e-34	87.85	Ribosomal protein S25 family protein	[more]
AT4G39200.1	2.2e-32	85.05	Ribosomal protein S25 family protein	[more]
AT4G34555.1	2.4e-31	85.85	Ribosomal protein S25 family protein	[more]
AT2G16360.1	1.4e-28	79.49	Ribosomal protein S25 family protein	[more]

BLAST of CsGy1G026390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SIK2\|RS252_ARATH	1.6e-32	87.85	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
sp\|Q9T029\|RS254_ARATH	3.9e-31	85.05	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
sp\|P46301\|RS25_SOLLC	1.1e-30	85.00	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
sp\|Q8GYL5\|RS253_ARATH	4.3e-30	85.85	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
sp\|Q9SIW5\|RS251_ARATH	6.9e-28	82.86	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of CsGy1G026390 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LW64\|A0A0A0LW64_CUCSA	1.3e-34	99.07	40S ribosomal protein S25 OS=Cucumis sativus OX=3659 GN=Csa_1G573590 PE=4 SV=1	[more]
tr\|A0A1S4DY71\|A0A1S4DY71_CUCME	8.1e-34	98.13	40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103492227 PE=4 SV...	[more]
tr\|A0A1S3C4W3\|A0A1S3C4W3_CUCME	1.3e-31	93.46	40S ribosomal protein S25-2-like OS=Cucumis melo OX=3656 GN=LOC103496510 PE=4 SV...	[more]
tr\|A0A059BGE9\|A0A059BGE9_EUCGR	1.7e-31	91.25	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02690 PE=4 SV...	[more]
tr\|A0A2K3LH00\|A0A2K3LH00_TRIPR	2.2e-31	91.25	40S ribosomal protein s25-2-like OS=Trifolium pratense OX=57577 GN=L195_g033777 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G026390.1	CsGy1G026390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.2780		coord: 39..126 e-value: 1.1E-37 score: 129.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	PANTHER	PTHR12850:SF13	SUBFAMILY NOT NAMED	coord: 20..126
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 26..123 e-value: 1.1E-40 score: 137.9
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 20..126
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 58..125 e-value: 3.0E-28 score: 305.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G026390	Cla011300	Watermelon (97103) v1	cgybwmB022
CsGy1G026390	Csa1G573590	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G026390	MELO3C015373	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G026390	ClCG03G016480	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G026390	CSPI01G27190	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G026390	CmaCh10G010950	Cucurbita maxima (Rimu)	cgybcmaB022
CsGy1G026390	CmoCh10G011720	Cucurbita moschata (Rifu)	cgybcmoB022
CsGy1G026390	Lsi06G001830	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G026390	Cp4.1LG11g09220	Cucurbita pepo (Zucchini)	cgybcpeB027
CsGy1G026390	MELO3C015373.2	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G026390	CsaV3_1G039500	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G026390	Cla97C03G066790	Watermelon (97103) v2	cgybwmbB041
CsGy1G026390	Bhi02G001761	Wax gourd	cgybwgoB101
CsGy1G026390	Carg27089	Silver-seed gourd	carcgybB0761

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G026390	Watermelon (Charleston Gray)	cgybwcgB030
CsGy1G026390	Watermelon (97103) v1	cgybwmB070
CsGy1G026390	Cucurbita maxima (Rimu)	cgybcmaB054
CsGy1G026390	Cucurbita moschata (Rifu)	cgybcmoB050
CsGy1G026390	Cucurbita pepo (Zucchini)	cgybcpeB143