Cucsa.161230 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAAGTAAGTACATTGTTTTCATTTATTGAACAATTCATTAAATTATAATCTAAATTAAAAATCTTAGACTCTCTTTTGGGTTAATTTAATTTAATTTAATCAGCAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAACAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG ATGATTCCAAGTCGTTGTGCAGCTTGTAAGTATTTAAGAAGAAGATGTTCATCAAATTGCATTTTCTCTCCTTATTTTCCCTCAAACAATCCTCAAAGATTCGCCATTGTTCATAGAATCTATGGTGCTAGTAATGTTGCTAAATTCCTTCAACAAGTTCCTATGGATCTACGAGGTGAAGCAGCAGAGACTTTGTATTTTGAAGCAAAATGTAGAATTGAAGATCCAATTTACGGATGTGTTGGGATTATTTCCCAATTACAATATGAATTACACGTGGCAGAAACCCAGTTGGCCAAAACTCGAGCTGAGATTGCTCTCCTCGCTTCCAACCGTCAACAAGCCCAACACGAAGACTTTCCATTTGATGACCCCAGCTCAGGCCCAATTTTTACTGGGCTTTCCACTCCAGCCCACTTTTCTGAGCAATTGTTTCGTGCTTAG MIPSRCAACKYLRRRCSSNCIFSPYFPSNNPQRFAIVHRIYGASNVAKFLQQVPMDLRGEAAETLYFEAKCRIEDPIYGCVGIISQLQYELHVAETQLAKTRAEIALLASNRQQAQHEDFPFDDPSSGPIFTGLSTPAHFSEQLFRA*
BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 3.4e-39 Identity = 73/120 (60.83%), Postives = 92/120 (76.67%), Query Frame = 1
BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 3.8e-38 Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1
BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 7.7e-31 Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2) HSP 1 Score: 129.8 bits (325), Expect = 2.5e-29 Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
BLAST of Cucsa.161230 vs. Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 3.9e-27 Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 1
BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0A0LLX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373510 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 1.8e-79 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0A0L9N7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180300 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 8.5e-53 Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1
BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0D2RZL8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G123600 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40 Identity = 79/121 (65.29%), Postives = 98/121 (80.99%), Query Frame = 1
BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A061FP58_THECC (LOB domain-containing protein 23 OS=Theobroma cacao GN=TCM_035123 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40 Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 1
BLAST of Cucsa.161230 vs. TrEMBL
Match: A0A0B0PT25_GOSAR (LOB domain-containing 24-like protein OS=Gossypium arboreum GN=F383_07421 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40 Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 1
BLAST of Cucsa.161230 vs. TAIR10
Match: AT3G26660.1 (AT3G26660.1 LOB domain-containing protein 24) HSP 1 Score: 162.5 bits (410), Expect = 1.9e-40 Identity = 73/120 (60.83%), Postives = 92/120 (76.67%), Query Frame = 1
BLAST of Cucsa.161230 vs. TAIR10
Match: AT3G26620.1 (AT3G26620.1 LOB domain-containing protein 23) HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39 Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 1
BLAST of Cucsa.161230 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4) HSP 1 Score: 134.8 bits (338), Expect = 4.3e-32 Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
BLAST of Cucsa.161230 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 129.8 bits (325), Expect = 1.4e-30 Identity = 59/123 (47.97%), Postives = 85/123 (69.11%), Query Frame = 1
BLAST of Cucsa.161230 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1) HSP 1 Score: 122.5 bits (306), Expect = 2.2e-28 Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 1
BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|700207689|gb|KGN62808.1| (hypothetical protein Csa_2G373510 [Cucumis sativus]) HSP 1 Score: 303.1 bits (775), Expect = 2.6e-79 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|659089563|ref|XP_008445577.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]) HSP 1 Score: 266.5 bits (680), Expect = 2.7e-68 Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 1
BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|449446189|ref|XP_004140854.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis sativus]) HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52 Identity = 111/151 (73.51%), Postives = 121/151 (80.13%), Query Frame = 1
BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|659077366|ref|XP_008439169.1| (PREDICTED: LOB domain-containing protein 24-like [Cucumis melo]) HSP 1 Score: 212.2 bits (539), Expect = 6.0e-52 Identity = 111/153 (72.55%), Postives = 122/153 (79.74%), Query Frame = 1
BLAST of Cucsa.161230 vs. NCBI nr
Match: gi|802750384|ref|XP_012087781.1| (PREDICTED: LOB domain-containing protein 24-like [Jatropha curcas]) HSP 1 Score: 177.2 bits (448), Expect = 2.2e-41 Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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