Cucsa.157280 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.157280
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMediator of RNA polymerase II transcription subunit 30
Locationscaffold01141 : 263543 .. 265053 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGGAATTGGGAATTTTGAAGATTCAGAACTCTCTCTCTTTACAAATTCGGTGCATTTTCGAATACATTATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAACGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGTGAAATTACTGACTGATCTTCCATTTATCCATCTAGCTCAATAGCCAATGTTTATCATTTCGAATTTGATTTTTATCTGGGAAAATTGAGATCGATTTGGAGATGTTGGGTTCTCCCCTATGGTACGAAATGCTATAAGTGTCGGAACATCGAATCTTGGTATCCATTTCTGACGAATTCCTTAAATTCTTCCTGAATTTGATAGATTGCAGATGCTACATTTGATCTGGTTTTCATTTTCACTGTTGCTAATTGATGCATGTACTTACTCCATGTACTTGTAATTTGATAGATTGCTAACTGCATATACTTGTTCTAAACCTATGCTGATTCAATGATTTTAAGTAGAGCTTCGTGTTTATTGATAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTTTTGTTCTCTTTAGCTTGTGAATTCATGTCAGTAATTTATTTTTTCTTCAATACTTTTTGGATGTGGCGTGAACACTTCAATGGTTTCTGGAAATTATTTACTTATTAAGATTTTGGAGTCTACTTAGCTTCAACAACGCAGTACTGTCATTTTTCGATATATCTGTGTAGAATTTACTTAAAAGTTAAAGTATATACAATGAAACTGAGAAGGTAACGTCTCTACAAATTTCAAGATAACAGTTCCGTTTTCTTCTTATTTGTGGTATAGTATATCCAAGGAAAGATTTTGAAACTAAACGGACAATAGAGATAATCAAATATTGAAACTTTATAATATTTTAGAGGATACGTGATAGGTATTATCGATAGTATGCTTTTTCTTTAGCCTTTAAGGTCCTAGAAATGACATTTTTTTCCCTTCAACTACTATCTTATAAGGGTCCTATCTTCGGTTTCTTTGCAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAA

mRNA sequence

GTTGGAATTGGGAATTTTGAAGATTCAGAACTCTCTCTCTTTACAAATTCGGTGCATTTTCGAATACATTATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAACGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAA

Coding sequence (CDS)

ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAACGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

Protein sequence

MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV*
Homology
[Close]
BLAST of Cucsa.157280 vs. Swiss-Prot
Match: MED30_ARATH (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana GN=MED30 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.9e-51
Identity = 105/188 (55.85%), Postives = 142/188 (75.53%), Query Frame = 1 

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPS 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----------T 72

Query: 74  SHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEEARVRYKNSVLALRAILAAIP 133
             + + +V+ DA++ + TSHH++S+GGGG G  G   L+EA +RYKNSV +LRA+LAAIP
Sbjct: 73  GSNGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIP 132

Query: 134 NSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVS 193
           NSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+S
Sbjct: 133 NSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIS 189

Query: 194 TWQSPCSV 199
           TWQSPCSV
Sbjct: 193 TWQSPCSV 189

[Close]
BLAST of Cucsa.157280 vs. TrEMBL
Match: A0A0A0LNW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 9.8e-105
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of Cucsa.157280 vs. TrEMBL
Match: W9QC57_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010110 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-60
Identity = 124/202 (61.39%), Postives = 159/202 (78.71%), Query Frame = 1 

Query: 1   MEEKSTNVLALP--QTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT 60
           MEEK+ N +A+   +TTQ+LAMEG KHLE+TIESAFQIL SMNDELCNP LWSTT++ A 
Sbjct: 1   MEEKAVNSMAIASLKTTQDLAMEGQKHLEDTIESAFQILSSMNDELCNPALWSTTTTVAA 60

Query: 61  TATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNS 120
             +S    ++ +GPSSHS NG+VNGDA++  + HH D  GGGG+ +GGAL EA+ RYKN+
Sbjct: 61  ATSSSSPSSAANGPSSHS-NGLVNGDAAASDSHHHADLGGGGGA-AGGALGEAQFRYKNA 120

Query: 121 VLALRAILAAIPNSQKAKAYESGTSGHAS--PADQSEIDKLEQHLSNLRKELVVKNLHIK 180
           V +LRAILAAIPNSQ+ + +E+GT+  +S  PA + EI+KLE+  SNLR EL  KN ++K
Sbjct: 121 VASLRAILAAIPNSQRGRTFETGTTPTSSVTPAQEVEIEKLEERASNLRTELANKNAYLK 180

Query: 181 LLIDQLRDLVADVSTWQSPCSV 199
           +LIDQLRDL+ D+STWQSPCSV
Sbjct: 181 ILIDQLRDLITDISTWQSPCSV 200

[Close]
BLAST of Cucsa.157280 vs. TrEMBL
Match: M5XZI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011908mg PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58
Identity = 128/201 (63.68%), Postives = 149/201 (74.13%), Query Frame = 1 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEK T     P+TTQELAMEG KHLEETIE+AFQIL SMNDELCNPTLWSTTSS +   
Sbjct: 1   MEEKDTTS---PKTTQELAMEGQKHLEETIEAAFQILSSMNDELCNPTLWSTTSSFSAAT 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASS--ESTSHHTDSSGGGGSGSGGALEEARVRYKNS 120
                    +GP+ H ANGV NGD+SS   +++HH D  G GGSG+GGALEEAR RY NS
Sbjct: 61  NIA------NGPAPH-ANGVNNGDSSSSDNTSTHHGDLIGAGGSGTGGALEEARHRYTNS 120

Query: 121 VLALRAILAAIPNSQKAKAYESGT-SGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKL 180
           V  LRA+L  IPNSQKA +  S T     SPAD++EI+KL++  SNLRKEL  KNL+IK 
Sbjct: 121 VRLLRAVLTTIPNSQKAPSETSSTVVSSESPADEAEIEKLDERASNLRKELANKNLYIKF 180

Query: 181 LIDQLRDLVADVSTWQSPCSV 199
           LIDQLRDL+ D+STWQSPCS+
Sbjct: 181 LIDQLRDLITDISTWQSPCSI 191

[Close]
BLAST of Cucsa.157280 vs. TrEMBL
Match: A0A061FZZ9_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014655 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.3e-58
Identity = 126/190 (66.32%), Postives = 155/190 (81.58%), Query Frame = 1 

Query: 13  QTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TSSTATTATSGLTI--AS 72
           +TTQELA EG+KHLEETIE+AFQIL SMNDELCNP LWST  +SS +TTA+S  T   A+
Sbjct: 17  KTTQELAAEGLKHLEETIEAAFQILSSMNDELCNPALWSTIPSSSNSTTASSTTTANTAA 76

Query: 73  PSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVLALRAILAA 132
           P+GPSS S     NGD++S+   HH +  G GGSG+G AL+EAR+RYKNSV +LRA+LAA
Sbjct: 77  PNGPSSLS-----NGDSASDG-GHHLEMGGIGGSGNG-ALDEARLRYKNSVASLRAVLAA 136

Query: 133 IPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVAD 192
           IPNSQKAKA+E+G++  +SPAD++EIDKLE   SNLRKEL  KN ++KLLIDQLRDL+ D
Sbjct: 137 IPNSQKAKAFETGSTA-SSPADEAEIDKLEDQASNLRKELANKNEYLKLLIDQLRDLITD 196

Query: 193 VSTWQSPCSV 199
           +STWQSPCS+
Sbjct: 197 ISTWQSPCSI 198

[Close]
BLAST of Cucsa.157280 vs. TrEMBL
Match: B9RAE3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505810 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.0e-57
Identity = 122/203 (60.10%), Postives = 159/203 (78.33%), Query Frame = 1 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           ME+ + + +   +TTQELAMEG KHLEETI++A+QIL SMNDELCNPTLWSTTSS+  T 
Sbjct: 1   MEDTTMSTITQSKTTQELAMEGQKHLEETIQAAYQILSSMNDELCNPTLWSTTSSSNNTT 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSES-TSHHTDSSG----GGGSGSGGALEEARVRY 120
           +    I++P+  +S S NGVVNGD+ S++  +HH D +G    GGG+G+ GAL+EAR RY
Sbjct: 61  S---PISAPANSNSLSQNGVVNGDSVSDAVVAHHFDGTGTGVVGGGTGN-GALDEARFRY 120

Query: 121 KNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHI 180
           KNSV ALR +LAAIPNS KA ++E+ +S   SPAD+++++KLE+  SNLRKEL  KN ++
Sbjct: 121 KNSVAALREVLAAIPNSHKAISFETSSS---SPADEADVEKLEEQASNLRKELFNKNAYL 180

Query: 181 KLLIDQLRDLVADVSTWQSPCSV 199
           KLLIDQLRDL+ D+STWQSPCSV
Sbjct: 181 KLLIDQLRDLITDISTWQSPCSV 196

[Close]
BLAST of Cucsa.157280 vs. TAIR10
Match: AT5G63480.1 (AT5G63480.1 unknown protein)

HSP 1 Score: 201.8 bits (512), Expect = 3.9e-52
Identity = 105/188 (55.85%), Postives = 142/188 (75.53%), Query Frame = 1 

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPS 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----------T 72

Query: 74  SHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEEARVRYKNSVLALRAILAAIP 133
             + + +V+ DA++ + TSHH++S+GGGG G  G   L+EA +RYKNSV +LRA+LAAIP
Sbjct: 73  GSNGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIP 132

Query: 134 NSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVS 193
           NSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+S
Sbjct: 133 NSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIS 189

Query: 194 TWQSPCSV 199
           TWQSPCSV
Sbjct: 193 TWQSPCSV 189

[Close]
BLAST of Cucsa.157280 vs. NCBI nr
Match: gi|449440544|ref|XP_004138044.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus])

HSP 1 Score: 387.5 bits (994), Expect = 1.4e-104
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of Cucsa.157280 vs. NCBI nr
Match: gi|659128893|ref|XP_008464424.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 3.8e-102
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 1 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of Cucsa.157280 vs. NCBI nr
Match: gi|703063449|ref|XP_010086964.1| (hypothetical protein L484_010110 [Morus notabilis])

HSP 1 Score: 241.1 bits (614), Expect = 1.6e-60
Identity = 124/202 (61.39%), Postives = 159/202 (78.71%), Query Frame = 1 

Query: 1   MEEKSTNVLALP--QTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT 60
           MEEK+ N +A+   +TTQ+LAMEG KHLE+TIESAFQIL SMNDELCNP LWSTT++ A 
Sbjct: 1   MEEKAVNSMAIASLKTTQDLAMEGQKHLEDTIESAFQILSSMNDELCNPALWSTTTTVAA 60

Query: 61  TATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNS 120
             +S    ++ +GPSSHS NG+VNGDA++  + HH D  GGGG+ +GGAL EA+ RYKN+
Sbjct: 61  ATSSSSPSSAANGPSSHS-NGLVNGDAAASDSHHHADLGGGGGA-AGGALGEAQFRYKNA 120

Query: 121 VLALRAILAAIPNSQKAKAYESGTSGHAS--PADQSEIDKLEQHLSNLRKELVVKNLHIK 180
           V +LRAILAAIPNSQ+ + +E+GT+  +S  PA + EI+KLE+  SNLR EL  KN ++K
Sbjct: 121 VASLRAILAAIPNSQRGRTFETGTTPTSSVTPAQEVEIEKLEERASNLRTELANKNAYLK 180

Query: 181 LLIDQLRDLVADVSTWQSPCSV 199
           +LIDQLRDL+ D+STWQSPCSV
Sbjct: 181 ILIDQLRDLITDISTWQSPCSV 200

[Close]
BLAST of Cucsa.157280 vs. NCBI nr
Match: gi|657991338|ref|XP_008387893.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Malus domestica])

HSP 1 Score: 236.1 bits (601), Expect = 5.2e-59
Identity = 133/203 (65.52%), Postives = 156/203 (76.85%), Query Frame = 1 

Query: 1   MEEKSTNVL-ALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 60
           M+EK +N L A P+TTQELAMEG KHLEETIE+AFQIL SMNDELCNPTLWSTT  TA++
Sbjct: 1   MDEKDSNELTASPKTTQELAMEGQKHLEETIEAAFQILSSMNDELCNPTLWSTTG-TASS 60

Query: 61  ATSGLTIASPSGPSSHSANGVVNGDASSESTS---HHTDSSGGGGSGSGGALEEARVRYK 120
            T+       +GPS HS NGV NGD+SS   +    H D  G GG G+GGALEEAR RYK
Sbjct: 61  NTA-------NGPSFHS-NGVNNGDSSSSENTFSHQHGDLVGAGGPGTGGALEEARFRYK 120

Query: 121 NSVLALRAILAAIPNSQKAKAYESGTS-GHASPADQSEIDKLEQHLSNLRKELVVKNLHI 180
           NSV  LRA+LAAIPNSQKA +  S T+ G  SPADQ+EI+KL++  S+LRKEL  KN++I
Sbjct: 121 NSVGLLRAVLAAIPNSQKATSKTSSTAVGSESPADQAEIEKLDERASDLRKELTNKNVYI 180

Query: 181 KLLIDQLRDLVADVSTWQSPCSV 199
           K LIDQLRDL+ D+STWQSPCSV
Sbjct: 181 KFLIDQLRDLITDISTWQSPCSV 194

[Close]
BLAST of Cucsa.157280 vs. NCBI nr
Match: gi|694316563|ref|XP_009334475.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Pyrus x bretschneideri])

HSP 1 Score: 235.7 bits (600), Expect = 6.9e-59
Identity = 135/203 (66.50%), Postives = 154/203 (75.86%), Query Frame = 1 

Query: 1   MEEKSTNVL-ALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 60
           M+EK  N L A P+ TQELAMEG KHLEETIE+AFQIL SMNDELCNPTLWSTT  TA++
Sbjct: 1   MDEKDANELTASPKMTQELAMEGQKHLEETIEAAFQILSSMNDELCNPTLWSTTG-TASS 60

Query: 61  ATSGLTIASPSGPSSHSANGVVNGDASSE---STSHHTDSSGGGGSGSGGALEEARVRYK 120
            T+       SGPS HS NGV NGD+SS    S+  H D  G GG G+GGALEEAR RYK
Sbjct: 61  NTA-------SGPSFHS-NGVNNGDSSSSENTSSHQHGDLVGAGGPGTGGALEEARFRYK 120

Query: 121 NSVLALRAILAAIPNSQKAKAYESGTS-GHASPADQSEIDKLEQHLSNLRKELVVKNLHI 180
           NSV  LRA+LAAIPNSQKA +  S T+ G  S ADQ+EIDKL++  SNLRKEL  KN++I
Sbjct: 121 NSVGLLRAVLAAIPNSQKATSKTSSTAVGAESTADQAEIDKLDERASNLRKELTNKNVYI 180

Query: 181 KLLIDQLRDLVADVSTWQSPCSV 199
           K LIDQLRDL+ D+STWQSPCSV
Sbjct: 181 KFLIDQLRDLITDISTWQSPCSV 194

The following BLAST results are available for this feature:
BLAST of Cucsa.157280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MED30_ARATH6.9e-5155.85Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana G... [more]
BLAST of Cucsa.157280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNW4_CUCSA9.8e-105100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001500 PE=4 SV=1[more]
W9QC57_9ROSA1.1e-6061.39Uncharacterized protein OS=Morus notabilis GN=L484_010110 PE=4 SV=1[more]
M5XZI4_PRUPE4.0e-5863.68Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011908mg PE=4 SV=1[more]
A0A061FZZ9_THECC5.3e-5866.32Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014655 PE=4 SV=1[more]
B9RAE3_RICCO2.0e-5760.10Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505810 PE=4 SV=1[more]
BLAST of Cucsa.157280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63480.13.9e-5255.85 unknown protein[more]
BLAST of Cucsa.157280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440544|ref|XP_004138044.1|1.4e-104100.00PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativ... [more]
gi|659128893|ref|XP_008464424.1|3.8e-10297.98PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo][more]
gi|703063449|ref|XP_010086964.1|1.6e-6061.39hypothetical protein L484_010110 [Morus notabilis][more]
gi|657991338|ref|XP_008387893.1|5.2e-5965.52PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Malus domesti... [more]
gi|694316563|ref|XP_009334475.1|6.9e-5966.50PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Pyrus x brets... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016592 mediator complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.157280.1Cucsa.157280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 154..174
scor
NoneNo IPR availablePANTHERPTHR36406FAMILY NOT NAMEDcoord: 3..198
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.157280Cla019281Watermelon (97103) v1cgywmB279
Cucsa.157280Csa1G001500Cucumber (Chinese Long) v2cgycuB224
Cucsa.157280MELO3C026202Melon (DHL92) v3.5.1cgymeB264
Cucsa.157280ClCG06G017970Watermelon (Charleston Gray)cgywcgB263
Cucsa.157280CSPI01G00490Wild cucumber (PI 183967)cgycpiB229
Cucsa.157280CmaCh10G000560Cucurbita maxima (Rimu)cgycmaB0433
Cucsa.157280CmoCh10G000500Cucurbita moschata (Rifu)cgycmoB0432
Cucsa.157280Lsi06G016470Bottle gourd (USVL1VR-Ls)cgylsiB250
Cucsa.157280Cp4.1LG18g09040Cucurbita pepo (Zucchini)cgycpeB0420
Cucsa.157280MELO3C026202.2Melon (DHL92) v3.6.1cgymedB263
Cucsa.157280CsaV3_1G000500Cucumber (Chinese Long) v3cgycucB236
Cucsa.157280Cla97C06G127700Watermelon (97103) v2cgywmbB264
Cucsa.157280Carg10276Silver-seed gourdcarcgyB0422
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.157280Melon (DHL92) v3.6.1cgymedB264
Cucsa.157280Melon (DHL92) v3.6.1cgymedB261
Cucsa.157280Silver-seed gourdcarcgyB0684
Cucsa.157280Silver-seed gourdcarcgyB1122
Cucsa.157280Cucumber (Chinese Long) v3cgycucB237
Cucsa.157280Cucumber (Chinese Long) v3cgycucB238
Cucsa.157280Watermelon (97103) v2cgywmbB263
Cucsa.157280Wax gourdcgywgoB302
Cucsa.157280Wax gourdcgywgoB303
Cucsa.157280Wax gourdcgywgoB304
Cucsa.157280Cucurbita maxima (Rimu)cgycmaB0435
Cucsa.157280Cucurbita maxima (Rimu)cgycmaB0434
Cucsa.157280Cucurbita maxima (Rimu)cgycmaB0436
Cucsa.157280Cucurbita moschata (Rifu)cgycmoB0433
Cucsa.157280Cucurbita moschata (Rifu)cgycmoB0434
Cucsa.157280Cucurbita moschata (Rifu)cgycmoB0435
Cucsa.157280Wild cucumber (PI 183967)cgycpiB230
Cucsa.157280Wild cucumber (PI 183967)cgycpiB231
Cucsa.157280Cucumber (Chinese Long) v2cgycuB225
Cucsa.157280Melon (DHL92) v3.5.1cgymeB262
Cucsa.157280Watermelon (Charleston Gray)cgywcgB262
Cucsa.157280Watermelon (97103) v1cgywmB278
Cucsa.157280Cucurbita pepo (Zucchini)cgycpeB0422
Cucsa.157280Cucurbita pepo (Zucchini)cgycpeB0419
Cucsa.157280Cucurbita pepo (Zucchini)cgycpeB0421
Cucsa.157280Bottle gourd (USVL1VR-Ls)cgylsiB249