Cp4.1LG18g09040 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG18g09040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMediator of RNA polymerase II transcription subunit 30
LocationCp4.1LG18 : 8132496 .. 8134967 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGATTATTTTTAATTTCATTTGTTTCATTTATTTATTTCTTTTTTTTGGCCTTCTCGATTTCAATTTACCGATGAGGGTTAGGGTTTCATGTGAACATCAGAAGTGTGATTGAAAGTTGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTTAACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCATCTGTTTTTCTTGTTCTGGAAAAATTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAATTACTGACTGATCTTCCTCTTATTCGTCTTTGTTCGTCAGCCAGCGTTTCTCATTTCTCATTTCATTTCTCATTTGGCAAAATTCGAGATTGATTCGAAGATATTTGGTTCCCCCATGTTACAAAATGCTTTGTGGAGAACATGGAATTTTTGTATTCAATTTCCGCCGAGTGCCTAAAATTCTTCCTGAATTTGATAGATTGCAGATACTACATTCGACCTGGTTTTCATTTTCACCACTGCTGATAGATGCGTGGACTTAATCCATGTCTATGAATTTGATAGATTGCTAAACTGCATTGACTTGTTGTTCACTTATGCCGATTAAGCGACTTAAATCAGAGTTTCATGGTTTATTGATAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTCTATTGTATCTTCAGCTTGTAAATTCATGTCAGTAATTTATTTTTTCTTCAAGACACTTAGGATTACAACCACTTAGAATTTTCTGGCAAAGATTTCGTTTGGGAACCAAATATATCTGGAAATAATTTACTTATATAAGACTTCGGAGGTAAATATACAGTAAAATTTACTAAAATATGTACAAATATTGATGAAACTGAGAAGGTCTTATAGATTTCAAGACAACAGTTCTGTTTGTCTTATTGTTTGTTGTATATCAGAATTAATCTAAGGAAAGATTTTGAAACTAAATAGACAATGAGAAAATCAAATATTGAAACTAATAACGTTATGGAGGATATGTCATGGATATTATAGGTAATATGCTTCTTCCTAGAAATGACATCTTCTTTTTCTTTCAACTGCTATTATAAGGGTCCTATCTGCGGTGTGTTTGCAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACATATCTAGCCTTGAGTCTCCTCACTAATCTAGCTGTCGTAATTTGAAAATGTCGTGCTCTGTTGCTTTATAACATGAGTTGTTATTAGAACGTTTCTTTATATAATCTCTTCAATGAAACTGGGATTATAAATTTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGATAAATCAAGTACCAGGAATAAAAGGTTCAATATTTCCATGAAGCAGAAGAATCCTTATATAAGAAAATTTGTTTACTATTTCAATGAACGATGCTCGTGTGTCGTGATTACCTTAGTTTTTCTTAGAAATCATCTACAGAAACCCATTAAACACTCTTAACACACTTGGATGAACACACAAAAACAACCATATGGTATCAGCGTATGAAACATAGTTACACTTGTTCGCAAGTTCTAAAATCTAGCTCGTCTGGAATAAGAATTTGTGGCCGTGTAGGGGTTTTATACCATCGAAGAAGAATGCATTCAGTTGTGCATTGAGGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATTGCCTCTTTGCTTGCTCTGATGAACCTCGAAACAGCTCCTCTAGTGTAGTCATGTGCTTCTTTAACCGTCATCTTCTCGCTTATTTCATTAGGGAAGCTGCTTAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACAACCTCGCTCTGAAACTCGGAAAGTCTACTGTTTTCGTTAGCTTCTGTTTTCCTCAACGGTGTCACTTCGGGCAAGGTT

mRNA sequence

AGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGATTATTTTTAATTTCATTTGTTTCATTTATTTATTTCTTTTTTTTGGCCTTCTCGATTTCAATTTACCGATGAGGGTTAGGGTTTCATGTGAACATCAGAAGTGTGATTGAAAGTTGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTTAACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCATCTGTTTTTCTTGTTCTGGAAAAATTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACATATCTAGCCTTGAGTCTCCTCACTAATCTAGCTGTCGTAATTTGAAAATGTCGTGCTCTGTTGCTTTATAACATGAGTTGTTATTAGAACGTTTCTTTATATAATCTCTTCAATGAAACTGGGATTATAAATTTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGATAAATCAAGTACCAGGAATAAAAGGTTCAATATTTCCATGAAGCAGAAGAATCCTTATATAAGAAAATTTGTTTACTATTTCAATGAACGATGCTCGTGTGTCGTGATTACCTTAGTTTTTCTTAGAAATCATCTACAGAAACCCATTAAACACTCTTAACACACTTGGATGAACACACAAAAACAACCATATGGTATCAGCGTATGAAACATAGTTACACTTGTTCGCAAGTTCTAAAATCTAGCTCGTCTGGAATAAGAATTTGTGGCCGTGTAGGGGTTTTATACCATCGAAGAAGAATGCATTCAGTTGTGCATTGAGGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATTGCCTCTTTGCTTGCTCTGATGAACCTCGAAACAGCTCCTCTAGTGTAGTCATGTGCTTCTTTAACCGTCATCTTCTCGCTTATTTCATTAGGGAAGCTGCTTAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACAACCTCGCTCTGAAACTCGGAAAGTCTACTGTTTTCGTTAGCTTCTGTTTTCCTCAACGGTGTCACTTCGGGCAAGGTT

Coding sequence (CDS)

ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA

Protein sequence

MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
BLAST of Cp4.1LG18g09040 vs. Swiss-Prot
Match: MED30_ARATH (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana GN=MED30 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.1e-44
Identity = 108/191 (56.54%), Postives = 140/191 (73.30%), Query Frame = 1

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT---SSTATTTTSGLTIASPN 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+   SS ATTT S        
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATTTGS-------- 72

Query: 74  APSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--ALEEARVRYKNSVLALRAILA 133
                + + +V+ DA++ + T+HH++++ GGG G  G   L+EA +RYKNSV +LRA+LA
Sbjct: 73  -----NGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLA 132

Query: 134 AIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVA 193
           AIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LREL+A
Sbjct: 133 AIPNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIA 189

Query: 194 DVSTWQSPCSV 199
           D+STWQSPCSV
Sbjct: 193 DISTWQSPCSV 189

BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: A0A0A0LNW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.5e-92
Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 1

Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: W9QC57_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010110 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 122/202 (60.40%), Postives = 157/202 (77.72%), Query Frame = 1

Query: 1   MEEKPTNVLSLP--QTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT 60
           MEEK  N +++   +TTQ+LAMEG KHLE+TIESAFQIL SMNDELCNP LWSTT++ A 
Sbjct: 1   MEEKAVNSMAIASLKTTQDLAMEGQKHLEDTIESAFQILSSMNDELCNPALWSTTTTVAA 60

Query: 61  TTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNS 120
            T+S    ++ N PSSHS NG+VNGDA++  ++HH D   GGG+ +GGAL EA+ RYKN+
Sbjct: 61  ATSSSSPSSAANGPSSHS-NGLVNGDAAASDSHHHADLGGGGGA-AGGALGEAQFRYKNA 120

Query: 121 VLALRAILAAIPNSQKAKAHESGTSGHAS--PADQSEIDKLEQHLSNLRKELMVKNLHIK 180
           V +LRAILAAIPNSQ+ +  E+GT+  +S  PA + EI+KLE+  SNLR EL  KN ++K
Sbjct: 121 VASLRAILAAIPNSQRGRTFETGTTPTSSVTPAQEVEIEKLEERASNLRTELANKNAYLK 180

Query: 181 LLIDQLRELVADVSTWQSPCSV 199
           +LIDQLR+L+ D+STWQSPCSV
Sbjct: 181 ILIDQLRDLITDISTWQSPCSV 200

BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: A0A061FZZ9_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014655 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.2e-51
Identity = 127/206 (61.65%), Postives = 156/206 (75.73%), Query Frame = 1

Query: 1   MEEKPTNVL----SLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST 60
           MEE P N      S  +TTQELA EG+KHLEETIE+AFQIL SMNDELCNP LWST  S+
Sbjct: 1   MEENPLNATTPTSSNTKTTQELAAEGLKHLEETIEAAFQILSSMNDELCNPALWSTIPSS 60

Query: 61  ATTTTSGLT----IASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEAR 120
           + +TT+  T     A+PN PSS S     NGD++S+   HH +    GGSG+ GAL+EAR
Sbjct: 61  SNSTTASSTTTANTAAPNGPSSLS-----NGDSASDG-GHHLEMGGIGGSGN-GALDEAR 120

Query: 121 VRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKN 180
           +RYKNSV +LRA+LAAIPNSQKAKA E+G++  +SPAD++EIDKLE   SNLRKEL  KN
Sbjct: 121 LRYKNSVASLRAVLAAIPNSQKAKAFETGSTA-SSPADEAEIDKLEDQASNLRKELANKN 180

Query: 181 LHIKLLIDQLRELVADVSTWQSPCSV 199
            ++KLLIDQLR+L+ D+STWQSPCS+
Sbjct: 181 EYLKLLIDQLRDLITDISTWQSPCSI 198

BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: M5XZI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011908mg PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 8.1e-51
Identity = 126/201 (62.69%), Postives = 148/201 (73.63%), Query Frame = 1

Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
           MEEK T   + P+TTQELAMEG KHLEETIE+AFQIL SMNDELCNPTLWSTTSS +  T
Sbjct: 1   MEEKDT---TSPKTTQELAMEGQKHLEETIEAAFQILSSMNDELCNPTLWSTTSSFSAAT 60

Query: 61  TSGLTIASPNAPSSHSTNGVVNGDASS--ESTNHHTDTSSGGGSGSGGALEEARVRYKNS 120
                    N P+ H+ NGV NGD+SS   ++ HH D    GGSG+GGALEEAR RY NS
Sbjct: 61  NIA------NGPAPHA-NGVNNGDSSSSDNTSTHHGDLIGAGGSGTGGALEEARHRYTNS 120

Query: 121 VLALRAILAAIPNSQKAKAHESGT-SGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKL 180
           V  LRA+L  IPNSQKA +  S T     SPAD++EI+KL++  SNLRKEL  KNL+IK 
Sbjct: 121 VRLLRAVLTTIPNSQKAPSETSSTVVSSESPADEAEIEKLDERASNLRKELANKNLYIKF 180

Query: 181 LIDQLRELVADVSTWQSPCSV 199
           LIDQLR+L+ D+STWQSPCS+
Sbjct: 181 LIDQLRDLITDISTWQSPCSI 191

BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: A0A0D2PM96_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G058300 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49
Identity = 129/206 (62.62%), Postives = 155/206 (75.24%), Query Frame = 1

Query: 1   MEEKPT-NVLSLP-----QTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS 60
           MEE PT +  + P     +TTQELA EG+KHLEETIE+AFQIL SMNDELCNP LWST  
Sbjct: 1   MEENPTVSPTTTPTNSGNKTTQELASEGLKHLEETIEAAFQILSSMNDELCNPALWSTNP 60

Query: 61  STATTTTSGLTIASPNAPSSHSTNGVV--NGDASSESTNHHTDTSSGGGSGSGGALEEAR 120
           +T  TTT+    A PN  S   +NGVV  NGD+SS+   HH +    GGSG+G AL+EAR
Sbjct: 61  TTNNTTTN---TAGPNGSSL--SNGVVLGNGDSSSDG-GHHLEMGGIGGSGNG-ALDEAR 120

Query: 121 VRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKN 180
           +RYKNSV ALR +L AIPNSQKAKA E+G++   SPAD+++I+KLE+  SNLRKEL  KN
Sbjct: 121 LRYKNSVAALRTVLTAIPNSQKAKAFETGSTA-TSPADEADIEKLEEEASNLRKELANKN 180

Query: 181 LHIKLLIDQLRELVADVSTWQSPCSV 199
           L+IK LIDQLREL+ DVSTWQSPCS+
Sbjct: 181 LYIKRLIDQLRELITDVSTWQSPCSM 198

BLAST of Cp4.1LG18g09040 vs. TAIR10
Match: AT5G63480.1 (AT5G63480.1 unknown protein)

HSP 1 Score: 178.3 bits (451), Expect = 4.6e-45
Identity = 108/191 (56.54%), Postives = 140/191 (73.30%), Query Frame = 1

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT---SSTATTTTSGLTIASPN 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+   SS ATTT S        
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATTTGS-------- 72

Query: 74  APSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--ALEEARVRYKNSVLALRAILA 133
                + + +V+ DA++ + T+HH++++ GGG G  G   L+EA +RYKNSV +LRA+LA
Sbjct: 73  -----NGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLA 132

Query: 134 AIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVA 193
           AIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LREL+A
Sbjct: 133 AIPNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIA 189

Query: 194 DVSTWQSPCSV 199
           D+STWQSPCSV
Sbjct: 193 DISTWQSPCSV 189

BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|449440544|ref|XP_004138044.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 3.6e-92
Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 1

Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|659128893|ref|XP_008464424.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo])

HSP 1 Score: 345.1 bits (884), Expect = 8.0e-92
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 1

Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
           MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|703063449|ref|XP_010086964.1| (hypothetical protein L484_010110 [Morus notabilis])

HSP 1 Score: 214.5 bits (545), Expect = 1.6e-52
Identity = 122/202 (60.40%), Postives = 157/202 (77.72%), Query Frame = 1

Query: 1   MEEKPTNVLSLP--QTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT 60
           MEEK  N +++   +TTQ+LAMEG KHLE+TIESAFQIL SMNDELCNP LWSTT++ A 
Sbjct: 1   MEEKAVNSMAIASLKTTQDLAMEGQKHLEDTIESAFQILSSMNDELCNPALWSTTTTVAA 60

Query: 61  TTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNS 120
            T+S    ++ N PSSHS NG+VNGDA++  ++HH D   GGG+ +GGAL EA+ RYKN+
Sbjct: 61  ATSSSSPSSAANGPSSHS-NGLVNGDAAASDSHHHADLGGGGGA-AGGALGEAQFRYKNA 120

Query: 121 VLALRAILAAIPNSQKAKAHESGTSGHAS--PADQSEIDKLEQHLSNLRKELMVKNLHIK 180
           V +LRAILAAIPNSQ+ +  E+GT+  +S  PA + EI+KLE+  SNLR EL  KN ++K
Sbjct: 121 VASLRAILAAIPNSQRGRTFETGTTPTSSVTPAQEVEIEKLEERASNLRTELANKNAYLK 180

Query: 181 LLIDQLRELVADVSTWQSPCSV 199
           +LIDQLR+L+ D+STWQSPCSV
Sbjct: 181 ILIDQLRDLITDISTWQSPCSV 200

BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|657991338|ref|XP_008387893.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Malus domestica])

HSP 1 Score: 213.0 bits (541), Expect = 4.7e-52
Identity = 128/203 (63.05%), Postives = 154/203 (75.86%), Query Frame = 1

Query: 1   MEEKPTNVLSL-PQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 60
           M+EK +N L+  P+TTQELAMEG KHLEETIE+AFQIL SMNDELCNPTLWSTT + ++ 
Sbjct: 1   MDEKDSNELTASPKTTQELAMEGQKHLEETIEAAFQILSSMNDELCNPTLWSTTGTASSN 60

Query: 61  TTSGLTIASPNAPSSHSTNGVVNGDASSES---TNHHTDTSSGGGSGSGGALEEARVRYK 120
           T +G        PS HS NGV NGD+SS     ++ H D    GG G+GGALEEAR RYK
Sbjct: 61  TANG--------PSFHS-NGVNNGDSSSSENTFSHQHGDLVGAGGPGTGGALEEARFRYK 120

Query: 121 NSVLALRAILAAIPNSQKAKAHESGTS-GHASPADQSEIDKLEQHLSNLRKELMVKNLHI 180
           NSV  LRA+LAAIPNSQKA +  S T+ G  SPADQ+EI+KL++  S+LRKEL  KN++I
Sbjct: 121 NSVGLLRAVLAAIPNSQKATSKTSSTAVGSESPADQAEIEKLDERASDLRKELTNKNVYI 180

Query: 181 KLLIDQLRELVADVSTWQSPCSV 199
           K LIDQLR+L+ D+STWQSPCSV
Sbjct: 181 KFLIDQLRDLITDISTWQSPCSV 194

BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|694316563|ref|XP_009334475.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Pyrus x bretschneideri])

HSP 1 Score: 213.0 bits (541), Expect = 4.7e-52
Identity = 130/203 (64.04%), Postives = 152/203 (74.88%), Query Frame = 1

Query: 1   MEEKPTNVLSL-PQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 60
           M+EK  N L+  P+ TQELAMEG KHLEETIE+AFQIL SMNDELCNPTLWSTT + ++ 
Sbjct: 1   MDEKDANELTASPKMTQELAMEGQKHLEETIEAAFQILSSMNDELCNPTLWSTTGTASSN 60

Query: 61  TTSGLTIASPNAPSSHSTNGVVNGDASSE---STNHHTDTSSGGGSGSGGALEEARVRYK 120
           T SG        PS HS NGV NGD+SS    S++ H D    GG G+GGALEEAR RYK
Sbjct: 61  TASG--------PSFHS-NGVNNGDSSSSENTSSHQHGDLVGAGGPGTGGALEEARFRYK 120

Query: 121 NSVLALRAILAAIPNSQKAKAHESGTS-GHASPADQSEIDKLEQHLSNLRKELMVKNLHI 180
           NSV  LRA+LAAIPNSQKA +  S T+ G  S ADQ+EIDKL++  SNLRKEL  KN++I
Sbjct: 121 NSVGLLRAVLAAIPNSQKATSKTSSTAVGAESTADQAEIDKLDERASNLRKELTNKNVYI 180

Query: 181 KLLIDQLRELVADVSTWQSPCSV 199
           K LIDQLR+L+ D+STWQSPCSV
Sbjct: 181 KFLIDQLRDLITDISTWQSPCSV 194

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MED30_ARATH8.1e-4456.54Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana G... [more]
Match NameE-valueIdentityDescription
A0A0A0LNW4_CUCSA2.5e-9293.94Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001500 PE=4 SV=1[more]
W9QC57_9ROSA1.1e-5260.40Uncharacterized protein OS=Morus notabilis GN=L484_010110 PE=4 SV=1[more]
A0A061FZZ9_THECC6.2e-5161.65Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014655 PE=4 SV=1[more]
M5XZI4_PRUPE8.1e-5162.69Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011908mg PE=4 SV=1[more]
A0A0D2PM96_GOSRA2.0e-4962.62Uncharacterized protein OS=Gossypium raimondii GN=B456_001G058300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G63480.14.6e-4556.54 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449440544|ref|XP_004138044.1|3.6e-9293.94PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativ... [more]
gi|659128893|ref|XP_008464424.1|8.0e-9293.94PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo][more]
gi|703063449|ref|XP_010086964.1|1.6e-5260.40hypothetical protein L484_010110 [Morus notabilis][more]
gi|657991338|ref|XP_008387893.1|4.7e-5263.05PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Malus domesti... [more]
gi|694316563|ref|XP_009334475.1|4.7e-5264.04PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Pyrus x brets... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016592 mediator complex
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g09040.1Cp4.1LG18g09040.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 154..174
scor
NoneNo IPR availablePANTHERPTHR36406FAMILY NOT NAMEDcoord: 3..198
score: 9.6

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g09040Cucurbita pepo (Zucchini)cpecpeB029
Cp4.1LG18g09040Cucurbita pepo (Zucchini)cpecpeB351
Cp4.1LG18g09040Cucurbita pepo (Zucchini)cpecpeB358
Cp4.1LG18g09040Cucurbita pepo (Zucchini)cpecpeB361
Cp4.1LG18g09040Cucurbita pepo (Zucchini)cpecpeB367
Cp4.1LG18g09040Cucumber (Gy14) v1cgycpeB1035
Cp4.1LG18g09040Cucurbita maxima (Rimu)cmacpeB130
Cp4.1LG18g09040Cucurbita maxima (Rimu)cmacpeB133
Cp4.1LG18g09040Cucurbita maxima (Rimu)cmacpeB227
Cp4.1LG18g09040Cucurbita maxima (Rimu)cmacpeB274
Cp4.1LG18g09040Cucurbita maxima (Rimu)cmacpeB428
Cp4.1LG18g09040Cucurbita moschata (Rifu)cmocpeB109
Cp4.1LG18g09040Cucurbita moschata (Rifu)cmocpeB111
Cp4.1LG18g09040Cucurbita moschata (Rifu)cmocpeB194
Cp4.1LG18g09040Cucurbita moschata (Rifu)cmocpeB236
Cp4.1LG18g09040Cucurbita moschata (Rifu)cmocpeB389
Cp4.1LG18g09040Wild cucumber (PI 183967)cpecpiB359
Cp4.1LG18g09040Cucumber (Chinese Long) v2cpecuB359
Cp4.1LG18g09040Bottle gourd (USVL1VR-Ls)cpelsiB288
Cp4.1LG18g09040Watermelon (Charleston Gray)cpewcgB332
Cp4.1LG18g09040Watermelon (Charleston Gray)cpewcgB325
Cp4.1LG18g09040Watermelon (97103) v1cpewmB352
Cp4.1LG18g09040Melon (DHL92) v3.5.1cpemeB324
Cp4.1LG18g09040Cucumber (Gy14) v2cgybcpeB049
Cp4.1LG18g09040Cucumber (Gy14) v2cgybcpeB053
Cp4.1LG18g09040Cucumber (Gy14) v2cgybcpeB361
Cp4.1LG18g09040Melon (DHL92) v3.6.1cpemedB381
Cp4.1LG18g09040Silver-seed gourdcarcpeB0610
Cp4.1LG18g09040Silver-seed gourdcarcpeB0695
Cp4.1LG18g09040Silver-seed gourdcarcpeB0863
Cp4.1LG18g09040Silver-seed gourdcarcpeB1398
Cp4.1LG18g09040Cucumber (Chinese Long) v3cpecucB0439
Cp4.1LG18g09040Cucumber (Chinese Long) v3cpecucB0457
Cp4.1LG18g09040Wax gourdcpewgoB0447
Cp4.1LG18g09040Wax gourdcpewgoB0471