Cp4.1LG18g09040 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGATTATTTTTAATTTCATTTGTTTCATTTATTTATTTCTTTTTTTTGGCCTTCTCGATTTCAATTTACCGATGAGGGTTAGGGTTTCATGTGAACATCAGAAGTGTGATTGAAAGTTGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTTAACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCATCTGTTTTTCTTGTTCTGGAAAAATTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAATTACTGACTGATCTTCCTCTTATTCGTCTTTGTTCGTCAGCCAGCGTTTCTCATTTCTCATTTCATTTCTCATTTGGCAAAATTCGAGATTGATTCGAAGATATTTGGTTCCCCCATGTTACAAAATGCTTTGTGGAGAACATGGAATTTTTGTATTCAATTTCCGCCGAGTGCCTAAAATTCTTCCTGAATTTGATAGATTGCAGATACTACATTCGACCTGGTTTTCATTTTCACCACTGCTGATAGATGCGTGGACTTAATCCATGTCTATGAATTTGATAGATTGCTAAACTGCATTGACTTGTTGTTCACTTATGCCGATTAAGCGACTTAAATCAGAGTTTCATGGTTTATTGATAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTCTATTGTATCTTCAGCTTGTAAATTCATGTCAGTAATTTATTTTTTCTTCAAGACACTTAGGATTACAACCACTTAGAATTTTCTGGCAAAGATTTCGTTTGGGAACCAAATATATCTGGAAATAATTTACTTATATAAGACTTCGGAGGTAAATATACAGTAAAATTTACTAAAATATGTACAAATATTGATGAAACTGAGAAGGTCTTATAGATTTCAAGACAACAGTTCTGTTTGTCTTATTGTTTGTTGTATATCAGAATTAATCTAAGGAAAGATTTTGAAACTAAATAGACAATGAGAAAATCAAATATTGAAACTAATAACGTTATGGAGGATATGTCATGGATATTATAGGTAATATGCTTCTTCCTAGAAATGACATCTTCTTTTTCTTTCAACTGCTATTATAAGGGTCCTATCTGCGGTGTGTTTGCAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACATATCTAGCCTTGAGTCTCCTCACTAATCTAGCTGTCGTAATTTGAAAATGTCGTGCTCTGTTGCTTTATAACATGAGTTGTTATTAGAACGTTTCTTTATATAATCTCTTCAATGAAACTGGGATTATAAATTTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGATAAATCAAGTACCAGGAATAAAAGGTTCAATATTTCCATGAAGCAGAAGAATCCTTATATAAGAAAATTTGTTTACTATTTCAATGAACGATGCTCGTGTGTCGTGATTACCTTAGTTTTTCTTAGAAATCATCTACAGAAACCCATTAAACACTCTTAACACACTTGGATGAACACACAAAAACAACCATATGGTATCAGCGTATGAAACATAGTTACACTTGTTCGCAAGTTCTAAAATCTAGCTCGTCTGGAATAAGAATTTGTGGCCGTGTAGGGGTTTTATACCATCGAAGAAGAATGCATTCAGTTGTGCATTGAGGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATTGCCTCTTTGCTTGCTCTGATGAACCTCGAAACAGCTCCTCTAGTGTAGTCATGTGCTTCTTTAACCGTCATCTTCTCGCTTATTTCATTAGGGAAGCTGCTTAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACAACCTCGCTCTGAAACTCGGAAAGTCTACTGTTTTCGTTAGCTTCTGTTTTCCTCAACGGTGTCACTTCGGGCAAGGTT AGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGATTATTTTTAATTTCATTTGTTTCATTTATTTATTTCTTTTTTTTGGCCTTCTCGATTTCAATTTACCGATGAGGGTTAGGGTTTCATGTGAACATCAGAAGTGTGATTGAAAGTTGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTTAACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCATCTGTTTTTCTTGTTCTGGAAAAATTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACATATCTAGCCTTGAGTCTCCTCACTAATCTAGCTGTCGTAATTTGAAAATGTCGTGCTCTGTTGCTTTATAACATGAGTTGTTATTAGAACGTTTCTTTATATAATCTCTTCAATGAAACTGGGATTATAAATTTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGATAAATCAAGTACCAGGAATAAAAGGTTCAATATTTCCATGAAGCAGAAGAATCCTTATATAAGAAAATTTGTTTACTATTTCAATGAACGATGCTCGTGTGTCGTGATTACCTTAGTTTTTCTTAGAAATCATCTACAGAAACCCATTAAACACTCTTAACACACTTGGATGAACACACAAAAACAACCATATGGTATCAGCGTATGAAACATAGTTACACTTGTTCGCAAGTTCTAAAATCTAGCTCGTCTGGAATAAGAATTTGTGGCCGTGTAGGGGTTTTATACCATCGAAGAAGAATGCATTCAGTTGTGCATTGAGGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATTGCCTCTTTGCTTGCTCTGATGAACCTCGAAACAGCTCCTCTAGTGTAGTCATGTGCTTCTTTAACCGTCATCTTCTCGCTTATTTCATTAGGGAAGCTGCTTAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACAACCTCGCTCTGAAACTCGGAAAGTCTACTGTTTTCGTTAGCTTCTGTTTTCCTCAACGGTGTCACTTCGGGCAAGGTT ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAACGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTCATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
BLAST of Cp4.1LG18g09040 vs. Swiss-Prot
Match: MED30_ARATH (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana GN=MED30 PE=1 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 8.1e-44 Identity = 108/191 (56.54%), Postives = 140/191 (73.30%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: A0A0A0LNW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001500 PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 2.5e-92 Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: W9QC57_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010110 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52 Identity = 122/202 (60.40%), Postives = 157/202 (77.72%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: A0A061FZZ9_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014655 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 6.2e-51 Identity = 127/206 (61.65%), Postives = 156/206 (75.73%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: M5XZI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011908mg PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 8.1e-51 Identity = 126/201 (62.69%), Postives = 148/201 (73.63%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. TrEMBL
Match: A0A0D2PM96_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G058300 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49 Identity = 129/206 (62.62%), Postives = 155/206 (75.24%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. TAIR10
Match: AT5G63480.1 (AT5G63480.1 unknown protein) HSP 1 Score: 178.3 bits (451), Expect = 4.6e-45 Identity = 108/191 (56.54%), Postives = 140/191 (73.30%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|449440544|ref|XP_004138044.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]) HSP 1 Score: 346.3 bits (887), Expect = 3.6e-92 Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|659128893|ref|XP_008464424.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]) HSP 1 Score: 345.1 bits (884), Expect = 8.0e-92 Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|703063449|ref|XP_010086964.1| (hypothetical protein L484_010110 [Morus notabilis]) HSP 1 Score: 214.5 bits (545), Expect = 1.6e-52 Identity = 122/202 (60.40%), Postives = 157/202 (77.72%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|657991338|ref|XP_008387893.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Malus domestica]) HSP 1 Score: 213.0 bits (541), Expect = 4.7e-52 Identity = 128/203 (63.05%), Postives = 154/203 (75.86%), Query Frame = 1
BLAST of Cp4.1LG18g09040 vs. NCBI nr
Match: gi|694316563|ref|XP_009334475.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Pyrus x bretschneideri]) HSP 1 Score: 213.0 bits (541), Expect = 4.7e-52 Identity = 130/203 (64.04%), Postives = 152/203 (74.88%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |