Carg10276 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10276
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 30
Location	Cucurbita_argyrosperma_scaffold_047 : 193437 .. 195193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAACATCAGAAGTGTGATTGAAAGTCGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTCTACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCTTCTGTTTTTTGTTCTGGAAAATTTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAATTACTGACTGATCTTCCTCTTATTGAACTTTGTTCATCAGCCAGCGTTTCTCATTTCTCATTTGGCAAAATTCGAGATTGATTCGGAGATATTTGGTTCCCCCATGTTACAAAATGCTCTGTGGAGAACATGGAATTTTTGTATTCAATTTCCGCCGAGTGCCTAAAATTCTTCCTGAATTTGATAGATTGCAGATACTACATTCGACCTGGTTTTCATTTTCACCACTGCTGATAGATGCGTGGACTTAATCCATGTCTATGAATTTGATAGATTGCTAACTGCATTGACTTGTTGTTCACTTATGCCGATTAAGCGACTTAAATCAGAGTTTCATGGTTTATTGATAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTCTATTGTATCTTCAGCTTGTAAATTCATGTCAGTAATTTATTTTTTCTTCAAGACTCTTAGGATTACAACCAGTTAGAATTTTGTGGCAAAGATTTCATCTGGGAACCAAATATTTCTGGAAATAATTTACTTATATAAGACTTTGGAGGTAAATATATAGTAAAATTTACTAAAATATGTACAAATATTGATGAAACTGAGAAGGTCTTTAAAGATTTCAAGACAACAGTTCTGTTTGTCTTATTGTTTGTTGTATATCAGAACTAATCTAAGGAAAGATTTTGAAACTAAATAGGCAATTGAGAAAATCAAATAGTGAAACTAATAACGTTATGGAGGTTCTGTCATGGATATTATAGGTAATATGCTTCTTCCTAGAAATGACATCTTCTTTTTCTTTCAACTGCTATCTTACAAGGGTCCTATCTGCGGTGTGTTTGCAGGAACTTATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACACGACTAGCCTTGAGTCTCCTCACTAATCTAGCGGTCGTAATTTGAGAATGTCTTGCTCTGTTTCTTTATAAGATGAGCTGTTATTAGAACGTTTCTTTATATATCTCTTCAATGAAACTGGGATTATAAATCTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGAGATAAATCAAGTACCGGGAATAAAAGGTTCAATATTTCCATG

mRNA sequence

TGTGAACATCAGAAGTGTGATTGAAAGTCGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTCTACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCTTCTGTTTTTTGTTCTGGAAAATTTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACACGACTAGCCTTGAGTCTCCTCACTAATCTAGCGGTCGTAATTTGAGAATGTCTTGCTCTGTTTCTTTATAAGATGAGCTGTTATTAGAACGTTTCTTTATATATCTCTTCAATGAAACTGGGATTATAAATCTGCCATTGGCACTAGATTGTTAATATAACTTAAGGCTCTGAGATAAATCAAGTACCGGGAATAAAAGGTTCAATATTTCCATG

Coding sequence (CDS)

ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA

Protein sequence

MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

Homology

[Close]

BLAST of Carg10276 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60
           MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLRELVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of Carg10276 vs. NCBI nr
Match: XP_004138044.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_1G001500 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 7.5e-62
Identity = 184/198 (92.93%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST XXXXXXX
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Carg10276 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 1.8e-60
Identity = 165/198 (83.33%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60
           MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST    XXXX
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XX                      XXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXGLTIASPNGPSSHSANGVVNGDXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Carg10276 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 144/198 (72.73%), Postives = 155/198 (78.28%), Query Frame = 0


Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60
           ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWST        
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWST---TSSTA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
                                         XXXXXXXXXXXXXXXX LEEARVRY NSVL
Sbjct: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTXXXXXXXXXXXXXXXXALEEARVRYNNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRDLVADISTWQSPCSV 195

[Close]

BLAST of Carg10276 vs. NCBI nr
Match: XP_021286171.1 (mediator of RNA polymerase II transcription subunit 30 [Herrania umbratica])

HSP 1 Score: 175.3 bits (443), Expect = 2.1e-40
Identity = 127/204 (62.25%), Postives = 146/204 (71.57%), Query Frame = 0


Query: 1   MEEKPTNVLSLP-----QTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWS-TXX 60
           MEE P N  + P     +TTQELA EG+KHLEETIE+AFQIL SMNDELCNP LWS TXX
Sbjct: 1   MEENPLNATTPPTSSNTKTTQELAAEGLKHLEETIEAAFQILSSMNDELCNPALWSTTXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVR 120
           XXXXXXXXXXXXXXXXXXXX                                 L+EAR+R
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXPSSLSNGIANGDSASDGGHHLEMGGIGGSGNGALDEARLR 120

Query: 121 YKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLH 180
           YKNSV +LRA+LAAIPNSQKAKA E+G++  +SPAD++EIDKLE   SNLRKEL  KN +
Sbjct: 121 YKNSVASLRAVLAAIPNSQKAKAFETGSTA-SSPADEAEIDKLEDQASNLRKELANKNEY 180

Query: 181 IKLLIDQLRELVADVSTWQSPCSV 199
           +KLLIDQLREL+ D+STWQSPCS+
Sbjct: 181 LKLLIDQLRELITDISTWQSPCSI 203

[Close]

BLAST of Carg10276 vs. TAIR10
Match: AT5G63480.1 (unknown protein)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-36
Identity = 135/185 (72.97%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXXXXXXXXXXXXXXX 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST         XXXXXXXXXXXX
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWST-------SAXXXXXXXXXXXX 72

Query: 74  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVLALRAILAAIPNSQ 133
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+EA +RYKNSV +LRA+LAAIPNSQ
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 KAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQ 193
           KAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LREL+AD+STWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 199
           SPCSV
Sbjct: 193 SPCSV 189

[Close]

BLAST of Carg10276 vs. Swiss-Prot
Match: sp|Q9FMV4|MED30_ARATH (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-35
Identity = 135/185 (72.97%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXXXXXXXXXXXXXXX 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST         XXXXXXXXXXXX
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWST-------SAXXXXXXXXXXXX 72

Query: 74  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVLALRAILAAIPNSQ 133
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+EA +RYKNSV +LRA+LAAIPNSQ
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 KAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQ 193
           KAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LREL+AD+STWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 199
           SPCSV
Sbjct: 193 SPCSV 189

[Close]

BLAST of Carg10276 vs. TrEMBL
Match: tr|A0A0A0LNW4|A0A0A0LNW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.0e-62
Identity = 184/198 (92.93%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST XXXXXXX
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Carg10276 vs. TrEMBL
Match: tr|A0A1S3CMZ7|A0A1S3CMZ7_CUCME (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 165/198 (83.33%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60
           MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST    XXXX
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XX                      XXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXGLTIASPNGPSSHSANGVVNGDXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRELVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Carg10276 vs. TrEMBL
Match: tr|A0A061FZZ9|A0A061FZZ9_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_014655 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.0e-40
Identity = 138/202 (68.32%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 1   MEEKPTNVL----SLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXX 60
           MEE P N      S  +TTQELA EG+KHLEETIE+AFQIL SMNDELCNP LWST    
Sbjct: 1   MEENPLNATTPTSSNTKTTQELAAEGLKHLEETIEAAFQILSSMNDELCNPALWST---I 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYK 120
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               L+EAR+RYK
Sbjct: 61  PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLEMGGIGGSGNGALDEARLRYK 120

Query: 121 NSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIK 180
           NSV +LRA+LAAIPNSQKAKA E+G++  +SPAD++EIDKLE   SNLRKEL  KN ++K
Sbjct: 121 NSVASLRAVLAAIPNSQKAKAFETGSTA-SSPADEAEIDKLEDQASNLRKELANKNEYLK 180

Query: 181 LLIDQLRELVADVSTWQSPCSV 199
           LLIDQLR+L+ D+STWQSPCS+
Sbjct: 181 LLIDQLRDLITDISTWQSPCSI 198

[Close]

BLAST of Carg10276 vs. TrEMBL
Match: tr|A0A2C9UJ29|A0A2C9UJ29_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050400 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 144/206 (69.90%), Postives = 167/206 (81.07%), Query Frame = 0


Query: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST-------X 60
           ME+   +  +LP+TTQELA+EG KHLEETI++A+QIL SMNDELCNPTLWST       X
Sbjct: 1   MEDTVMSSTTLPKTTQELAIEGQKHLEETIQAAYQILSSMNDELCNPTLWSTSSXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARV 120
           XXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXX L+EAR 
Sbjct: 61  XXXXXXXXXXXXXXXXXXLSQNSVVANGEAXXXXXXXXXXXXXXXXXXXXXXXALDEARF 120

Query: 121 RYKNSVLALRAILAAIPNSQKAKAHESG-TSGHASPADQSEIDKLEQHLSNLRKELMVKN 180
           RYKNSV ALR +LAAIPNSQKAKA E+G T+  +SPA+QSEI+KLE+  SNLRKEL+ KN
Sbjct: 121 RYKNSVAALREVLAAIPNSQKAKAFETGSTTNSSSPANQSEIEKLEEQASNLRKELVNKN 180

Query: 181 LHIKLLIDQLRELVADVSTWQSPCSV 199
           +++KLLIDQLR+L+ D+S WQSPCSV
Sbjct: 181 VYLKLLIDQLRDLITDISMWQSPCSV 206

[Close]

BLAST of Carg10276 vs. TrEMBL
Match: tr|A0A1R3INJ2|A0A1R3INJ2_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_10986 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 115/203 (56.65%), Postives = 134/203 (66.01%), Query Frame = 0


Query: 1   MEEKP-----TNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXX 60
           MEE P     T   S  +TTQELA EG+KHLEETIE+AFQIL SMNDELCNP LWST   
Sbjct: 1   MEESPIVNATTPTNSSNKTTQELAAEGLKHLEETIEAAFQILSSMNDELCNPALWSTTPS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRY 120
              XXXXXXXXXXXXX                                    L+EAR+RY
Sbjct: 61  STNXXXXXXXXXXXXXGPSPLSNGAVLQNGDSASDCGHHLEMGGIGGSGNGALDEARLRY 120

Query: 121 KNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHI 180
           KNSV +LRA+LAAIPNSQKAKA E+G S  +SP ++++IDKLE   S+LRKE+  KN H+
Sbjct: 121 KNSVASLRAVLAAIPNSQKAKAFETG-SAASSPMEEADIDKLEDQASDLRKEVADKNEHL 180

Query: 181 KLLIDQLRELVADVSTWQSPCSV 199
           KLLIDQLREL+ D+STWQSPCS+
Sbjct: 181 KLLIDQLRELITDISTWQSPCSI 202

The following BLAST results are available for this feature:

BLAST of Carg10276 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921424.1	1.2e-64	100.00	mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_...	[more]
XP_004138044.1	7.5e-62	92.93	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativ...	[more]
XP_008464424.1	1.8e-60	83.33	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]	[more]
XP_022134927.1	1.6e-56	72.73	mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]	[more]
XP_021286171.1	2.1e-40	62.25	mediator of RNA polymerase II transcription subunit 30 [Herrania umbratica]	[more]

BLAST of Carg10276 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63480.1	1.3e-36	72.97	unknown protein	[more]

BLAST of Carg10276 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FMV4\|MED30_ARATH	2.4e-35	72.97	Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg10276 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNW4\|A0A0A0LNW4_CUCSA	5.0e-62	92.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1	[more]
tr\|A0A1S3CMZ7\|A0A1S3CMZ7_CUCME	1.2e-60	83.33	mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A061FZZ9\|A0A061FZZ9_THECC	7.0e-40	68.32	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_014655 PE=4 ...	[more]
tr\|A0A2C9UJ29\|A0A2C9UJ29_MANES	2.7e-39	69.90	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050400 PE=4 SV=...	[more]
tr\|A0A1R3INJ2\|A0A1R3INJ2_COCAP	3.5e-39	56.65	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_10986 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR034568	MED30

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10276-RA	Carg10276-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..149
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	FAMILY NOT NAMED	coord: 2..198

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10276	Cla019281	Watermelon (97103) v1	carwmB0356
Carg10276	Csa1G001500	Cucumber (Chinese Long) v2	carcuB0391
Carg10276	MELO3C026202	Melon (DHL92) v3.5.1	carmeB0369
Carg10276	ClCG06G017970	Watermelon (Charleston Gray)	carwcgB0357
Carg10276	CSPI01G00490	Wild cucumber (PI 183967)	carcpiB0396
Carg10276	Cucsa.157280	Cucumber (Gy14) v1	carcgyB0422
Carg10276	CmaCh10G000560	Cucurbita maxima (Rimu)	carcmaB0510
Carg10276	CmoCh10G000500	Cucurbita moschata (Rifu)	carcmoB0493
Carg10276	Lsi06G016470	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10276	Cp4.1LG18g09040	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10276	MELO3C026202.2	Melon (DHL92) v3.6.1	carmedB0375
Carg10276	CsaV3_1G000500	Cucumber (Chinese Long) v3	carcucB0395
Carg10276	Cla97C06G127700	Watermelon (97103) v2	carwmbB0382

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10276	Cucumber (Gy14) v2	carcgybB0371
Carg10276	Cucumber (Gy14) v2	carcgybB0373
Carg10276	Cucumber (Gy14) v1	carcgyB0424
Carg10276	Cucurbita maxima (Rimu)	carcmaB0511
Carg10276	Cucurbita maxima (Rimu)	carcmaB0513
Carg10276	Cucurbita maxima (Rimu)	carcmaB0515
Carg10276	Cucurbita maxima (Rimu)	carcmaB0516
Carg10276	Cucurbita moschata (Rifu)	carcmoB0494
Carg10276	Cucurbita moschata (Rifu)	carcmoB0495
Carg10276	Cucurbita moschata (Rifu)	carcmoB0497
Carg10276	Cucurbita moschata (Rifu)	carcmoB0498
Carg10276	Cucurbita moschata (Rifu)	carcmoB0500
Carg10276	Cucurbita pepo (Zucchini)	carcpeB0507
Carg10276	Cucurbita pepo (Zucchini)	carcpeB0510
Carg10276	Cucurbita pepo (Zucchini)	carcpeB0513
Carg10276	Cucurbita pepo (Zucchini)	carcpeB0514
Carg10276	Wild cucumber (PI 183967)	carcpiB0398
Carg10276	Cucumber (Chinese Long) v2	carcuB0393
Carg10276	Cucumber (Chinese Long) v3	carcucB0397
Carg10276	Bottle gourd (USVL1VR-Ls)	carlsiB330
Carg10276	Melon (DHL92) v3.5.1	carmeB0366
Carg10276	Melon (DHL92) v3.6.1	carmedB0372
Carg10276	Watermelon (Charleston Gray)	carwcgB0356
Carg10276	Watermelon (97103) v1	carwmB0354
Carg10276	Watermelon (97103) v2	carwmbB0379
Carg10276	Watermelon (97103) v2	carwmbB0381
Carg10276	Wax gourd	carwgoB0445
Carg10276	Wax gourd	carwgoB0448
Carg10276	Silver-seed gourd	carcarB387
Carg10276	Silver-seed gourd	carcarB388
Carg10276	Silver-seed gourd	carcarB390
Carg10276	Silver-seed gourd	carcarB391
Carg10276	Silver-seed gourd	carcarB395