CsaV3_1G000500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionmediator of RNA polymerase II transcription subunit 30
Locationchr1 : 285093 .. 287430 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAATTAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGTTTTCTTTTTTTTTTTTTCTGGGGTTTCTCGATTACTAATGAGAGAGTTAGGGTTTCGTGAACATCACAAACTCAAGTGTAATTGAAAGTTGGAATTGGGAATTTTGAAGATTCAGAACTCTCTCTCTTTACAAATTCGGTGCATTTTCGAATACATTATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGTGAAATTACTGACTGATCTTCCATTTATCCATCTAGTTCAATAGCCAATGTTTATCATTTCGAATTTGATTTTTATCTGGGAAAATTGAGATCGATTTGGAGATGTTGGGTTCTCCCCTATGGTACGAAATGCTATAAGTGTCGGAACATCGAATCTTGGTATCCATTTCTGACGAATTCCTTAAATTCTTCCTGAATTTGATAGATTGCAGATGCTACATTTGATCTGGTTTTCATTTTCACTGTTGCTAATTGATGCGTGTACTTACTCCATGTACTTGTAATTTGATAGATTGCTAACTGCATATACTTGTTCTAAACCTATGCTGATTCAATGATTTTAAGTAGAGCTTCGTGTTTATTGATAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTTTTGTTCTCTTTAGCTTGTGAATTCATGTCAGTAATTTATTTTTTCTTCAATACTTTTTGGATGTGGCGTGAACACTTCAATGGTTTCTGGAAATTATTTACTTATTAAGATTTTGGAGTCTACTTAGCTTCAACAACGCAGTACTGTCATTTTTCGATATATCTGTGTAGAATTTACTTAAAAGTTAAAATATATACAATGAAACTGAGAAGGTAACGTCTCTACAAATTTCAAGATAACAGTTCTGTTTTCTTCTTATTTGTGGTATAGTATATCCAAGGAAAGATTTTGAAACTAAACGGACAATAGAGATAATCAAATATTGAAACTTTATAATATTTTAGAGGATACGTGATAGGTATTATCGATAGTATGCTTTTTCTTTAGCCTTTAAGGTCCTAGAAATGACATTTTTTTCCCTTCAACTACTATCTTACAAGGGTCCTATCTTCGGTTTCTTTGCAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGTGCTAGCTTTGACTTTAGAGTCTCCTCGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGTTCTGTTTCTTGAAAAGATGAGTTATTAGAACGTTTCTTTGCATCTCTTCATTGAAAGTGGTGGCTATACAAATTTGCCATTGCCTATAAATTGTCAATATAGAGTAAGGCTCTGATAAATCAAGTGCCAGAGGAATTAAAGGTTCAATTACGTGAGTTTTTTCATACGTTACAATCTACAAAAACCCTCTAGACACTCTTAACACATACTTGGATGCACACAAAAACAACCATATAGCTTCTGCGTATGAAACATAGTTACACTTGCTTTCAACTTCTAAAATCTAGCTTGTAAGGAATGAGAATTTATGTGGCCGTATTAGGTTTTATACTCTCGAAGAATACAATCAGTTGTGGATTGATGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCTGATTCATCTGCACCCAACTTGATAGCCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCGTGTGCTTCTTTAATGGTCATCTTCTCGCTTATTTCATTAGGGAAACTACTCAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACTACCTCGCTCTGAAACTCGG

mRNA sequence

ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

Coding sequence (CDS)

ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

Protein sequence

MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Homology
[Close]
BLAST of CsaV3_1G000500 vs. NCBI nr
Match: XP_004138044.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_1G001500 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 5.2e-71
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsaV3_1G000500 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 4.9e-69
Identity = 177/198 (89.39%), Postives = 177/198 (89.39%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT   XXXX
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XX               NGVVNGD XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXGLTIASPNGPSSHSANGVVNGDXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsaV3_1G000500 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 254.2 bits (648), Expect = 3.6e-64
Identity = 156/198 (78.79%), Postives = 163/198 (82.32%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTT       
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTT---SSTA 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
                            NGVVNGDA     XXXXXXXXXXXXXXXX LEEARVRY NSVL
Sbjct: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTXXXXXXXXXXXXXXXXALEEARVRYNNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADISTWQSPCSV 195

[Close]
BLAST of CsaV3_1G000500 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 3.4e-62
Identity = 184/198 (92.93%), Postives = 188/198 (94.95%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST XXXXXXX
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]
BLAST of CsaV3_1G000500 vs. NCBI nr
Match: XP_021668759.1 (mediator of RNA polymerase II transcription subunit 30-like [Hevea brasiliensis])

HSP 1 Score: 193.4 bits (490), Expect = 7.6e-46
Identity = 125/203 (61.58%), Postives = 145/203 (71.43%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           ME+     + LP+TTQELA+EG KHLEETI++A+QIL SMNDELCNPTLWST    XXXX
Sbjct: 1   MEDSVMTSITLPKTTQELAIEGQKHLEETIQAAYQILSSMNDELCNPTLWSTGSTAXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVV-NGDA--XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKN 120
           XXXXXXXX         NGVV NGDA                        L+EAR RYKN
Sbjct: 61  XXXXXXXXANNIPSLSQNGVVANGDAASDGVHHLDGGAAAVGGVGTSNGALDEARFRYKN 120

Query: 121 SVLALRAILAAIPNSQKAKAYESG--TSGHASPADQSEIDKLEQHLSNLRKELVVKNLHI 180
           SV ALR +LAAIPNSQKAKA+E+G  T+  +SPA+Q+EI+KLE+  SNLRKELV KN ++
Sbjct: 121 SVAALREVLAAIPNSQKAKAFETGSTTNSTSSPANQAEIEKLEEQASNLRKELVNKNAYL 180

Query: 181 KLLIDQLRDLVADVSTWQSPCSV 199
           KLLIDQLRDLV D+STWQSPCSV
Sbjct: 181 KLLIDQLRDLVTDISTWQSPCSV 203

[Close]
BLAST of CsaV3_1G000500 vs. TAIR10
Match: AT5G63480.1 (unknown protein)

HSP 1 Score: 151.0 bits (380), Expect = 7.8e-37
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 0 

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXXXXXXXXXXXXXXX 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+        XXXXXXXXXXXX
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTS-------AXXXXXXXXXXXX 72

Query: 74  XXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVLALRAILAAIPNSQ 133
           XXXX        XXXXXXXXXXXXXXXXXXXXX L+EA +RYKNSV +LRA+LAAIPNSQ
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 KAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQ 193
           KAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 199
           SPCSV
Sbjct: 193 SPCSV 189

[Close]
BLAST of CsaV3_1G000500 vs. Swiss-Prot
Match: sp|Q9FMV4|MED30_ARATH (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-35
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 0 

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXXXXXXXXXXXXXXX 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+        XXXXXXXXXXXX
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTS-------AXXXXXXXXXXXX 72

Query: 74  XXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVLALRAILAAIPNSQ 133
           XXXX        XXXXXXXXXXXXXXXXXXXXX L+EA +RYKNSV +LRA+LAAIPNSQ
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 KAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQ 193
           KAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 199
           SPCSV
Sbjct: 193 SPCSV 189

[Close]
BLAST of CsaV3_1G000500 vs. TrEMBL
Match: tr|A0A0A0LNW4|A0A0A0LNW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.5e-71
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsaV3_1G000500 vs. TrEMBL
Match: tr|A0A1S3CMZ7|A0A1S3CMZ7_CUCME (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.2e-69
Identity = 177/198 (89.39%), Postives = 177/198 (89.39%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT   XXXX
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XX               NGVVNGD XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXGLTIASPNGPSSHSANGVVNGDXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsaV3_1G000500 vs. TrEMBL
Match: tr|A0A2I4EZZ4|A0A2I4EZZ4_9ROSI (mediator of RNA polymerase II transcription subunit 30-like OS=Juglans regia OX=51240 GN=LOC108994287 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.2e-45
Identity = 120/203 (59.11%), Postives = 141/203 (69.46%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST---TXXXX 60
           ME+K+++ L   +TTQELA+EG KHLEETIESAFQIL SMNDELCNP LWST   T    
Sbjct: 1   MEQKTSSPLTSAKTTQELAIEGQKHLEETIESAFQILSSMNDELCNPALWSTTTSTSLSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKN 120
           XXXXXXXXX           NGV NGDA                      LEEAR RYKN
Sbjct: 61  XXXXXXXXXPTAKGPSSVSSNGVANGDA-----ASSDTHPAESVGGTGGALEEARFRYKN 120

Query: 121 SVLALRAILAAIPNSQKAKAYESGT--SGHASPADQSEIDKLEQHLSNLRKELVVKNLHI 180
           SV +LRA++AAIP+S+KAKA+E G+  SG  SP DQ+EI KLE+  S+LRKEL  KN+++
Sbjct: 121 SVNSLRAVIAAIPSSRKAKAFEMGSPPSGPESPEDQTEIQKLEERASSLRKELANKNMYL 180

Query: 181 KLLIDQLRDLVADVSTWQSPCSV 199
           KLLIDQLRDL+ D+STWQSPCSV
Sbjct: 181 KLLIDQLRDLITDISTWQSPCSV 198

[Close]
BLAST of CsaV3_1G000500 vs. TrEMBL
Match: tr|A0A2C9UJ29|A0A2C9UJ29_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050400 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 152/206 (73.79%), Postives = 175/206 (84.95%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT----XXX 60
           ME+   +   LP+TTQELA+EG KHLEETI++A+QIL SMNDELCNPTLWST+    XXX
Sbjct: 1   MEDTVMSSTTLPKTTQELAIEGQKHLEETIQAAYQILSSMNDELCNPTLWSTSSXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXNGVV-NGDA--XXXXXXXXXXXXXXXXXXXXXXLEEARV 120
           XXXXXXXXXXXXXXXXXX   N VV NG+A  XXXXXXXXXXXXXXXXXXXXX L+EAR 
Sbjct: 61  XXXXXXXXXXXXXXXXXXLSQNSVVANGEAXXXXXXXXXXXXXXXXXXXXXXXALDEARF 120

Query: 121 RYKNSVLALRAILAAIPNSQKAKAYESG-TSGHASPADQSEIDKLEQHLSNLRKELVVKN 180
           RYKNSV ALR +LAAIPNSQKAKA+E+G T+  +SPA+QSEI+KLE+  SNLRKELV KN
Sbjct: 121 RYKNSVAALREVLAAIPNSQKAKAFETGSTTNSSSPANQSEIEKLEEQASNLRKELVNKN 180

Query: 181 LHIKLLIDQLRDLVADVSTWQSPCSV 199
           +++KLLIDQLRDL+ D+S WQSPCSV
Sbjct: 181 VYLKLLIDQLRDLITDISMWQSPCSV 206

[Close]
BLAST of CsaV3_1G000500 vs. TrEMBL
Match: tr|A0A067JFJ2|A0A067JFJ2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26438 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.8e-43
Identity = 106/200 (53.00%), Postives = 127/200 (63.50%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           ME+   + + LP+TTQELA+EG KHLEETI++A+QIL SMNDELCNP LWSTT       
Sbjct: 1   MEDTVMSSITLPKTTQELALEGQKHLEETIQAAYQILSSMNDELCNPNLWSTT------- 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGD--AXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNS 120
                                NGD  +                      L+EAR RYKNS
Sbjct: 61  -SSGNSSTVNTNTTSPITAATNGDVASDGGHHLDSGGAGGVGVGTCNGALDEARFRYKNS 120

Query: 121 VLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLL 180
           V ALR +LAAIPNSQKAKA+E+ T+  ASPAD +E++KLE+  SNLRKELV KN  +KLL
Sbjct: 121 VAALREVLAAIPNSQKAKAFET-TNSSASPADHAEVEKLEEQASNLRKELVNKNACLKLL 180

Query: 181 IDQLRDLVADVSTWQSPCSV 199
           IDQLRDL+ D+STWQSPCSV
Sbjct: 181 IDQLRDLITDISTWQSPCSV 191

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138044.15.2e-71100.00PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativ... [more]
XP_008464424.14.9e-6989.39PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo][more]
XP_022134927.13.6e-6478.79mediator of RNA polymerase II transcription subunit 30 [Momordica charantia][more]
XP_022921424.13.4e-6292.93mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_... [more]
XP_021668759.17.6e-4661.58mediator of RNA polymerase II transcription subunit 30-like [Hevea brasiliensis][more]
BLAST of CsaV3_1G000500 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63480.17.8e-3768.11unknown protein[more]
BLAST of CsaV3_1G000500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FMV4|MED30_ARATH1.4e-3568.11Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_1G000500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNW4|A0A0A0LNW4_CUCSA3.5e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1[more]
tr|A0A1S3CMZ7|A0A1S3CMZ7_CUCME3.2e-6989.39mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G... [more]
tr|A0A2I4EZZ4|A0A2I4EZZ4_9ROSI7.2e-4559.11mediator of RNA polymerase II transcription subunit 30-like OS=Juglans regia OX=... [more]
tr|A0A2C9UJ29|A0A2C9UJ29_MANES4.0e-4373.79Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050400 PE=4 SV=... [more]
tr|A0A067JFJ2|A0A067JFJ2_JATCU6.8e-4353.00Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26438 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR034568MED30
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016592 mediator complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000500.1CsaV3_1G000500.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..107
IPR034568Mediator of RNA polymerase II transcription subunit 30PANTHERPTHR36406FAMILY NOT NAMEDcoord: 1..198

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G000500CSPI01G00490Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000500Cucsa.157280Cucumber (Gy14) v1cgycucB236
CsaV3_1G000500CmaCh10G000560Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000500CmoCh10G000500Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000500Cp4.1LG18g09040Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000500Carg10276Silver-seed gourdcarcucB0395
CsaV3_1G000500Cla019281Watermelon (97103) v1cucwmB105
CsaV3_1G000500MELO3C026202Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000500ClCG06G017970Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000500Lsi06G016470Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000500MELO3C026202.2Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000500Cla97C06G127700Watermelon (97103) v2cucwmbB076
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000500Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000500Cucumber (Chinese Long) v3cuccucB017
CsaV3_1G000500Silver-seed gourdcarcucB0466
CsaV3_1G000500Silver-seed gourdcarcucB0643
CsaV3_1G000500Silver-seed gourdcarcucB1050
CsaV3_1G000500Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000500Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000500Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000500Cucumber (Gy14) v1cgycucB593
CsaV3_1G000500Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000500Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000500Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000500Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G000500Cucurbita maxima (Rimu)cmacucB0472
CsaV3_1G000500Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000500Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000500Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000500Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G000500Cucurbita moschata (Rifu)cmocucB0470
CsaV3_1G000500Cucurbita pepo (Zucchini)cpecucB0029
CsaV3_1G000500Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000500Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G000500Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000500Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000500Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000500Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000500Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000500Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000500Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000500Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000500Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000500Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000500Watermelon (Charleston Gray)cucwcgB072
CsaV3_1G000500Watermelon (97103) v1cucwmB032
CsaV3_1G000500Watermelon (97103) v2cucwmbB061
CsaV3_1G000500Watermelon (97103) v2cucwmbB048
CsaV3_1G000500Wax gourdcucwgoB015
CsaV3_1G000500Wax gourdcucwgoB062
CsaV3_1G000500Wax gourdcucwgoB087