CsaV3_1G000500.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G000500.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	mediator of RNA polymerase II transcription subunit 30
Location	chr1 : 285093 .. 287430 (-)
Sequence length	597

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGTTTTCTTTTTTTTTTTTTCTGGGGTTTCTCGATTACTAATGAGAGAGTTAGGGTTTCGTGAACATCACAAACTCAAGTGTAATTGAAAGTTGGAATTGGGAATTTTGAAGATTCAGAACTCTCTCTCTTTACAAATTCGGTGCATTTTCGAATACATTATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGTGAAATTACTGACTGATCTTCCATTTATCCATCTAGTTCAATAGCCAATGTTTATCATTTCGAATTTGATTTTTATCTGGGAAAATTGAGATCGATTTGGAGATGTTGGGTTCTCCCCTATGGTACGAAATGCTATAAGTGTCGGAACATCGAATCTTGGTATCCATTTCTGACGAATTCCTTAAATTCTTCCTGAATTTGATAGATTGCAGATGCTACATTTGATCTGGTTTTCATTTTCACTGTTGCTAATTGATGCGTGTACTTACTCCATGTACTTGTAATTTGATAGATTGCTAACTGCATATACTTGTTCTAAACCTATGCTGATTCAATGATTTTAAGTAGAGCTTCGTGTTTATTGATAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTTTTGTTCTCTTTAGCTTGTGAATTCATGTCAGTAATTTATTTTTTCTTCAATACTTTTTGGATGTGGCGTGAACACTTCAATGGTTTCTGGAAATTATTTACTTATTAAGATTTTGGAGTCTACTTAGCTTCAACAACGCAGTACTGTCATTTTTCGATATATCTGTGTAGAATTTACTTAAAAGTTAAAATATATACAATGAAACTGAGAAGGTAACGTCTCTACAAATTTCAAGATAACAGTTCTGTTTTCTTCTTATTTGTGGTATAGTATATCCAAGGAAAGATTTTGAAACTAAACGGACAATAGAGATAATCAAATATTGAAACTTTATAATATTTTAGAGGATACGTGATAGGTATTATCGATAGTATGCTTTTTCTTTAGCCTTTAAGGTCCTAGAAATGACATTTTTTTCCCTTCAACTACTATCTTACAAGGGTCCTATCTTCGGTTTCTTTGCAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGTGCTAGCTTTGACTTTAGAGTCTCCTCGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGTTCTGTTTCTTGAAAAGATGAGTTATTAGAACGTTTCTTTGCATCTCTTCATTGAAAGTGGTGGCTATACAAATTTGCCATTGCCTATAAATTGTCAATATAGAGTAAGGCTCTGATAAATCAAGTGCCAGAGGAATTAAAGGTTCAATTACGTGAGTTTTTTCATACGTTACAATCTACAAAAACCCTCTAGACACTCTTAACACATACTTGGATGCACACAAAAACAACCATATAGCTTCTGCGTATGAAACATAGTTACACTTGCTTTCAACTTCTAAAATCTAGCTTGTAAGGAATGAGAATTTATGTGGCCGTATTAGGTTTTATACTCTCGAAGAATACAATCAGTTGTGGATTGATGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCTGATTCATCTGCACCCAACTTGATAGCCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCGTGTGCTTCTTTAATGGTCATCTTCTCGCTTATTTCATTAGGGAAACTACTCAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACTACCTCGCTCTGAAACTCGG

mRNA sequence

ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

Coding sequence (CDS)

ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCACATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

Protein sequence

MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Homology

[Close]

BLAST of CsaV3_1G000500.1 vs. NCBI nr
Match: XP_004138044.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_1G001500 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 5.2e-71
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of CsaV3_1G000500.1 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 4.9e-69
Identity = 177/198 (89.39%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT   XXXX
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XX               NGVVNGD XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXGLTIASPNGPSSHSANGVVNGDXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of CsaV3_1G000500.1 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 254.2 bits (648), Expect = 3.6e-64
Identity = 156/198 (78.79%), Postives = 163/198 (82.32%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTT       
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTT---SSTA 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
                            NGVVNGDA     XXXXXXXXXXXXXXXX LEEARVRY NSVL
Sbjct: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTXXXXXXXXXXXXXXXXALEEARVRYNNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADISTWQSPCSV 195

[Close]

BLAST of CsaV3_1G000500.1 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 3.4e-62
Identity = 184/198 (92.93%), Postives = 188/198 (94.95%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST XXXXXXX
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of CsaV3_1G000500.1 vs. NCBI nr
Match: XP_021668759.1 (mediator of RNA polymerase II transcription subunit 30-like [Hevea brasiliensis])

HSP 1 Score: 193.4 bits (490), Expect = 7.6e-46
Identity = 125/203 (61.58%), Postives = 145/203 (71.43%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           ME+     + LP+TTQELA+EG KHLEETI++A+QIL SMNDELCNPTLWST    XXXX
Sbjct: 1   MEDSVMTSITLPKTTQELAIEGQKHLEETIQAAYQILSSMNDELCNPTLWSTGSTAXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVV-NGDA--XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKN 120
           XXXXXXXX         NGVV NGDA                        L+EAR RYKN
Sbjct: 61  XXXXXXXXANNIPSLSQNGVVANGDAASDGVHHLDGGAAAVGGVGTSNGALDEARFRYKN 120

Query: 121 SVLALRAILAAIPNSQKAKAYESG--TSGHASPADQSEIDKLEQHLSNLRKELVVKNLHI 180
           SV ALR +LAAIPNSQKAKA+E+G  T+  +SPA+Q+EI+KLE+  SNLRKELV KN ++
Sbjct: 121 SVAALREVLAAIPNSQKAKAFETGSTTNSTSSPANQAEIEKLEEQASNLRKELVNKNAYL 180

Query: 181 KLLIDQLRDLVADVSTWQSPCSV 199
           KLLIDQLRDLV D+STWQSPCSV
Sbjct: 181 KLLIDQLRDLVTDISTWQSPCSV 203

[Close]

BLAST of CsaV3_1G000500.1 vs. TAIR10
Match: AT5G63480.1 (unknown protein)

HSP 1 Score: 151.0 bits (380), Expect = 7.8e-37
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 0


Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXXXXXXXXXXXXXXX 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+        XXXXXXXXXXXX
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTS-------AXXXXXXXXXXXX 72

Query: 74  XXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVLALRAILAAIPNSQ 133
           XXXX        XXXXXXXXXXXXXXXXXXXXX L+EA +RYKNSV +LRA+LAAIPNSQ
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 KAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQ 193
           KAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 199
           SPCSV
Sbjct: 193 SPCSV 189

[Close]

BLAST of CsaV3_1G000500.1 vs. Swiss-Prot
Match: sp|Q9FMV4|MED30_ARATH (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-35
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 0


Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXXXXXXXXXXXXXXX 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+        XXXXXXXXXXXX
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTS-------AXXXXXXXXXXXX 72

Query: 74  XXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVLALRAILAAIPNSQ 133
           XXXX        XXXXXXXXXXXXXXXXXXXXX L+EA +RYKNSV +LRA+LAAIPNSQ
Sbjct: 73  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDEASLRYKNSVTSLRAVLAAIPNSQ 132

Query: 134 KAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQ 193
           KAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQ
Sbjct: 133 KAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQ 189

Query: 194 SPCSV 199
           SPCSV
Sbjct: 193 SPCSV 189

[Close]

BLAST of CsaV3_1G000500.1 vs. TrEMBL
Match: tr|A0A0A0LNW4|A0A0A0LNW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.5e-71
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of CsaV3_1G000500.1 vs. TrEMBL
Match: tr|A0A1S3CMZ7|A0A1S3CMZ7_CUCME (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.2e-69
Identity = 177/198 (89.39%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT   XXXX
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120
           XX               NGVVNGD XXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL
Sbjct: 61  XXGLTIASPNGPSSHSANGVVNGDXXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of CsaV3_1G000500.1 vs. TrEMBL
Match: tr|A0A2I4EZZ4|A0A2I4EZZ4_9ROSI (mediator of RNA polymerase II transcription subunit 30-like OS=Juglans regia OX=51240 GN=LOC108994287 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.2e-45
Identity = 120/203 (59.11%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST---TXXXX 60
           ME+K+++ L   +TTQELA+EG KHLEETIESAFQIL SMNDELCNP LWST   T    
Sbjct: 1   MEQKTSSPLTSAKTTQELAIEGQKHLEETIESAFQILSSMNDELCNPALWSTTTSTSLSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXNGVVNGDAXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKN 120
           XXXXXXXXX           NGV NGDA                      LEEAR RYKN
Sbjct: 61  XXXXXXXXXPTAKGPSSVSSNGVANGDA-----ASSDTHPAESVGGTGGALEEARFRYKN 120

Query: 121 SVLALRAILAAIPNSQKAKAYESGT--SGHASPADQSEIDKLEQHLSNLRKELVVKNLHI 180
           SV +LRA++AAIP+S+KAKA+E G+  SG  SP DQ+EI KLE+  S+LRKEL  KN+++
Sbjct: 121 SVNSLRAVIAAIPSSRKAKAFEMGSPPSGPESPEDQTEIQKLEERASSLRKELANKNMYL 180

Query: 181 KLLIDQLRDLVADVSTWQSPCSV 199
           KLLIDQLRDL+ D+STWQSPCSV
Sbjct: 181 KLLIDQLRDLITDISTWQSPCSV 198

[Close]

BLAST of CsaV3_1G000500.1 vs. TrEMBL
Match: tr|A0A2C9UJ29|A0A2C9UJ29_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050400 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 152/206 (73.79%), Postives = 175/206 (84.95%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT----XXX 60
           ME+   +   LP+TTQELA+EG KHLEETI++A+QIL SMNDELCNPTLWST+    XXX
Sbjct: 1   MEDTVMSSTTLPKTTQELAIEGQKHLEETIQAAYQILSSMNDELCNPTLWSTSSXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXNGVV-NGDA--XXXXXXXXXXXXXXXXXXXXXXLEEARV 120
           XXXXXXXXXXXXXXXXXX   N VV NG+A  XXXXXXXXXXXXXXXXXXXXX L+EAR 
Sbjct: 61  XXXXXXXXXXXXXXXXXXLSQNSVVANGEAXXXXXXXXXXXXXXXXXXXXXXXALDEARF 120

Query: 121 RYKNSVLALRAILAAIPNSQKAKAYESG-TSGHASPADQSEIDKLEQHLSNLRKELVVKN 180
           RYKNSV ALR +LAAIPNSQKAKA+E+G T+  +SPA+QSEI+KLE+  SNLRKELV KN
Sbjct: 121 RYKNSVAALREVLAAIPNSQKAKAFETGSTTNSSSPANQSEIEKLEEQASNLRKELVNKN 180

Query: 181 LHIKLLIDQLRDLVADVSTWQSPCSV 199
           +++KLLIDQLRDL+ D+S WQSPCSV
Sbjct: 181 VYLKLLIDQLRDLITDISMWQSPCSV 206

[Close]

BLAST of CsaV3_1G000500.1 vs. TrEMBL
Match: tr|A0A067JFJ2|A0A067JFJ2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26438 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.8e-43
Identity = 106/200 (53.00%), Postives = 127/200 (63.50%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTXXXXXXX 60
           ME+   + + LP+TTQELA+EG KHLEETI++A+QIL SMNDELCNP LWSTT       
Sbjct: 1   MEDTVMSSITLPKTTQELALEGQKHLEETIQAAYQILSSMNDELCNPNLWSTT------- 60

Query: 61  XXXXXXXXXXXXXXXXXNGVVNGD--AXXXXXXXXXXXXXXXXXXXXXXLEEARVRYKNS 120
                                NGD  +                      L+EAR RYKNS
Sbjct: 61  -SSGNSSTVNTNTTSPITAATNGDVASDGGHHLDSGGAGGVGVGTCNGALDEARFRYKNS 120

Query: 121 VLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLL 180
           V ALR +LAAIPNSQKAKA+E+ T+  ASPAD +E++KLE+  SNLRKELV KN  +KLL
Sbjct: 121 VAALREVLAAIPNSQKAKAFET-TNSSASPADHAEVEKLEEQASNLRKELVNKNACLKLL 180

Query: 181 IDQLRDLVADVSTWQSPCSV 199
           IDQLRDL+ D+STWQSPCSV
Sbjct: 181 IDQLRDLITDISTWQSPCSV 191

The following BLAST results are available for this feature:

BLAST of CsaV3_1G000500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138044.1	5.2e-71	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis sativ...	[more]
XP_008464424.1	4.9e-69	89.39	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]	[more]
XP_022134927.1	3.6e-64	78.79	mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]	[more]
XP_022921424.1	3.4e-62	92.93	mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_...	[more]
XP_021668759.1	7.6e-46	61.58	mediator of RNA polymerase II transcription subunit 30-like [Hevea brasiliensis]	[more]

BLAST of CsaV3_1G000500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63480.1	7.8e-37	68.11	unknown protein	[more]

BLAST of CsaV3_1G000500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FMV4\|MED30_ARATH	1.4e-35	68.11	Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_1G000500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNW4\|A0A0A0LNW4_CUCSA	3.5e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1	[more]
tr\|A0A1S3CMZ7\|A0A1S3CMZ7_CUCME	3.2e-69	89.39	mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A2I4EZZ4\|A0A2I4EZZ4_9ROSI	7.2e-45	59.11	mediator of RNA polymerase II transcription subunit 30-like OS=Juglans regia OX=...	[more]
tr\|A0A2C9UJ29\|A0A2C9UJ29_MANES	4.0e-43	73.79	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G050400 PE=4 SV=...	[more]
tr\|A0A067JFJ2\|A0A067JFJ2_JATCU	6.8e-43	53.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26438 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR034568	MED30

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G000500	CsaV3_1G000500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G000500.1	CsaV3_1G000500.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G000500.1.cds3	CsaV3_1G000500.1.cds3	CDS
CsaV3_1G000500.1.cds2	CsaV3_1G000500.1.cds2	CDS
CsaV3_1G000500.1.cds1	CsaV3_1G000500.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G000500.1.exon3	CsaV3_1G000500.1.exon3	exon
CsaV3_1G000500.1.exon2	CsaV3_1G000500.1.exon2	exon
CsaV3_1G000500.1.exon1	CsaV3_1G000500.1.exon1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..107
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	FAMILY NOT NAMED	coord: 1..198