CSPI04G12580 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G12580
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ethylene-responsive transcription factor
Location	Chr4 : 10956874 .. 10957509 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGAATGGAATCACTCAACATTTAGGAAATGCATATGATGATGCCTTTGAAACACCTGCTGCTCACATTGATTATACCGATTTCTCTTCATTTTTCTTTGTACCAACCTGA

mRNA sequence

ATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGAATGGAATCACTCAACATTTAGGAAATGCATATGATGATGCCTTTGAAACACCTGCTGCTCACATTGATTATACCGATTTCTCTTCATTTTTCTTTGTACCAACCTGA

Coding sequence (CDS)

ATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGAATGGAATCACTCAACATTTAGGAAATGCATATGATGATGCCTTTGAAACACCTGCTGCTCACATTGATTATACCGATTTCTCTTCATTTTTCTTTGTACCAACCTGA

Homology

[Close]

BLAST of CSPI04G12580 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-27
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 23  KKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNA 82
           K +  K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAACLLRGSN 
Sbjct: 14  KSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNT 73

Query: 83  RTNFTLASNSSSALSFKIRNLLIHKITLKR 113
           RTNF     ++S LS KIRNLL  K ++K+
Sbjct: 74  RTNFANHFPNNSQLSLKIRNLLHQKQSMKQ 103

[Close]

BLAST of CSPI04G12580 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 26  SGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTN 85
           +G++ F GVRQRP GKW AEI+D    +R+WLGT+NT EEAA  YD AA  LRG +A TN
Sbjct: 117 TGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN 176

Query: 86  FTLASNSSS 95
           F++   +++
Sbjct: 177 FSVTPTTAT 185

[Close]

BLAST of CSPI04G12580 vs. Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83
           KR  K  F G+RQRP GKW AEI+D    +R+WLGTFN+ EEAARAYD  A  +RG  A+
Sbjct: 113 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAK 172

Query: 84  TNFTLASNSS 94
            NF  A  ++
Sbjct: 173 VNFPEAPTTA 182

[Close]

BLAST of CSPI04G12580 vs. Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 29 RSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTNFTL 88
          + F GVRQR  G WVAEI+      R+WLGTF T EEAARAYDEAA L+ G NA+TNF L
Sbjct: 5  KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 89 ASNSSSALS 98
           +N++   S
Sbjct: 65 NNNNTGETS 73

[Close]

BLAST of CSPI04G12580 vs. Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83
           KR  K  + G+RQRP GKW AEI+D     R WLGTF+T EEAARAYD AA  +RG+ A+
Sbjct: 121 KRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAK 180

Query: 84  TNFTLASNSS 94
            NF    N S
Sbjct: 181 VNFPEEKNPS 190

[Close]

BLAST of CSPI04G12580 vs. TrEMBL
Match: A0A0A0L1N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.1e-117
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60
           MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF
Sbjct: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120
           NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA
Sbjct: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180
           HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT
Sbjct: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180

Query: 181 QHLGNAYDDAFETPAAHIDYTDFSSFFFVPT 212
           QHLGNAYDDAF+TPAAHIDYTDFSSFFFVPT
Sbjct: 181 QHLGNAYDDAFDTPAAHIDYTDFSSFFFVPT 211

[Close]

BLAST of CSPI04G12580 vs. TrEMBL
Match: A0A067EKK6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023169mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.7e-27
Identity = 77/147 (52.38%), Postives = 94/147 (63.95%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAF-KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGT 60
           M   V++Q  + V+  K+  K       K  FVGVRQRPSGKWVAEIKD T  IRMWLGT
Sbjct: 1   MGQQVQRQRPKGVSSAKIKAKSSTNPGNKSKFVGVRQRPSGKWVAEIKDTTKKIRMWLGT 60

Query: 61  FNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETH 120
           F T EEAARAYDEAACLLRGSN RTNF     ++S +S KIRNLL HK +LK+SS + T 
Sbjct: 61  FETAEEAARAYDEAACLLRGSNTRTNFATPVFTNSHISLKIRNLLNHKRSLKQSSPSTTT 120

Query: 121 AHVAHSET--NQEMHMFDNNAVWSSCN 145
           +  +++         + DNN+   S N
Sbjct: 121 STGSNTTAPIKPSTIVCDNNSSLGSSN 147

[Close]

BLAST of CSPI04G12580 vs. TrEMBL
Match: B9GY71_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21090g PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 68/101 (67.33%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 16  KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAAC 75
           K   +C+   S K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAAC
Sbjct: 20  KFKERCLSNNS-KNKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAAC 79

Query: 76  LLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSIT 117
           LLRGSN RTNF    +S+S +S KIRNLL  K +LK++S T
Sbjct: 80  LLRGSNTRTNFNTHVSSNSPISTKIRNLLNRKRSLKQNSST 119

[Close]

BLAST of CSPI04G12580 vs. TrEMBL
Match: D7SLK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00490 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26
Identity = 83/164 (50.61%), Postives = 99/164 (60.37%), Query Frame = 1


Query: 20  KCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRG 79
           KC K  SGK  FVGVRQRPSGKWVAEIK+ T  IRMWLGTFNT EEAARAYDEAACLLRG
Sbjct: 29  KCSK--SGK--FVGVRQRPSGKWVAEIKNTTQKIRMWLGTFNTAEEAARAYDEAACLLRG 88

Query: 80  SNARTNFTLASNSSSALSFKIRNLLIHKITLKR-------------------SSITETHA 139
           SN RTNF   + ++S LS KIRNLL  K +LK+                   +S T  ++
Sbjct: 89  SNTRTNFATHAPTNSPLSLKIRNLLHRKKSLKQNHPPPPAALTTIPTEMSTGASSTSGNS 148

Query: 140 HV-----AHSETNQEMHMFDN--NAVWSSCNGEIEVGFCHFTHS 158
           H      A +   Q++ MFD+      S+C GE+ +G   F  S
Sbjct: 149 HSINASHASNVVKQDIQMFDDAYRPDLSNCIGELRLGSSQFDPS 188

[Close]

BLAST of CSPI04G12580 vs. TrEMBL
Match: A0A067L4B8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01876 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 25  RSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNART 84
           ++ K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF+T EEAARAYDEAACLLRGSN RT
Sbjct: 27  KNSKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFDTAEEAARAYDEAACLLRGSNTRT 86

Query: 85  NFTLASNSSSALSFKIRNLLIHKITLKRS 114
           NFT   +++S +S KIRNLL HK   K++
Sbjct: 87  NFTNHVSTNSPISIKIRNLLNHKKNSKQN 115

[Close]

BLAST of CSPI04G12580 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-28
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 23  KKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNA 82
           K +  K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAACLLRGSN 
Sbjct: 14  KSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNT 73

Query: 83  RTNFTLASNSSSALSFKIRNLLIHKITLKR 113
           RTNF     ++S LS KIRNLL  K ++K+
Sbjct: 74  RTNFANHFPNNSQLSLKIRNLLHQKQSMKQ 103

[Close]

BLAST of CSPI04G12580 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 82.0 bits (201), Expect = 4.8e-16
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 26  SGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTN 85
           +G++ F GVRQRP GKW AEI+D    +R+WLGT+NT EEAA  YD AA  LRG +A TN
Sbjct: 117 TGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN 176

Query: 86  FTLASNSSS 95
           F++   +++
Sbjct: 177 FSVTPTTAT 185

[Close]

BLAST of CSPI04G12580 vs. TAIR10
Match: AT1G15360.1 (AT1G15360.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 29 RSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTNFTL 88
          + F GVRQR  G WVAEI+      R+WLGTF T EEAARAYDEAA L+ G NA+TNF L
Sbjct: 5  KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 89 ASNSSSALS 98
           +N++   S
Sbjct: 65 NNNNTGETS 73

[Close]

BLAST of CSPI04G12580 vs. TAIR10
Match: AT3G14230.1 (AT3G14230.1 related to AP2 2)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83
           KR  K  + G+RQRP GKW AEI+D     R WLGTF+T EEAARAYD AA  +RG+ A+
Sbjct: 121 KRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAK 180

Query: 84  TNFTLASNSS 94
            NF    N S
Sbjct: 181 VNFPEEKNPS 190

[Close]

BLAST of CSPI04G12580 vs. TAIR10
Match: AT4G34410.1 (AT4G34410.1 redox responsive transcription factor 1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 3   SSVEKQEHRDVAFKLVG--KCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 62
           SS  ++E   VA K  G  K  K+++ K  + GVRQRP GK+ AEI+D     R+WLGTF
Sbjct: 106 SSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTF 165

Query: 63  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALS 98
            T E+AARAYD AA   RG  A+ NF     +SS  S
Sbjct: 166 ETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSS 202

[Close]

BLAST of CSPI04G12580 vs. NCBI nr
Match: gi|449463881|ref|XP_004149659.1| (PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus])

HSP 1 Score: 430.6 bits (1106), Expect = 1.5e-117
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60
           MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF
Sbjct: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120
           NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA
Sbjct: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180
           HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT
Sbjct: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180

Query: 181 QHLGNAYDDAFETPAAHIDYTDFSSFFFVPT 212
           QHLGNAYDDAF+TPAAHIDYTDFSSFFFVPT
Sbjct: 181 QHLGNAYDDAFDTPAAHIDYTDFSSFFFVPT 211

[Close]

BLAST of CSPI04G12580 vs. NCBI nr
Match: gi|659098050|ref|XP_008449953.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 8.5e-108
Identity = 194/211 (91.94%), Postives = 200/211 (94.79%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60
           ME SVEKQE RDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF
Sbjct: 1   MEGSVEKQERRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120
           NT EEAARAYDEAACLLRGSNARTNFTLASNSSS LSFKIRNLLIHKITLKRSSITETHA
Sbjct: 61  NTAEEAARAYDEAACLLRGSNARTNFTLASNSSSTLSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180
           HVAHSETNQE HMFDN+ VW+SCNGEIEVGFCHFTHSCC LPLGFNFDMDESLSA NGIT
Sbjct: 121 HVAHSETNQETHMFDNDTVWNSCNGEIEVGFCHFTHSCCHLPLGFNFDMDESLSAPNGIT 180

Query: 181 QHLGNAYDDAFETPAAHIDYTDFSSFFFVPT 212
           +HLGN YDDAF+T +A +DYTDFSSFFFVPT
Sbjct: 181 EHLGNTYDDAFDTSSAQLDYTDFSSFFFVPT 211

[Close]

BLAST of CSPI04G12580 vs. NCBI nr
Match: gi|641835470|gb|KDO54445.1| (hypothetical protein CISIN_1g023169mg [Citrus sinensis])

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-27
Identity = 77/147 (52.38%), Postives = 94/147 (63.95%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAF-KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGT 60
           M   V++Q  + V+  K+  K       K  FVGVRQRPSGKWVAEIKD T  IRMWLGT
Sbjct: 1   MGQQVQRQRPKGVSSAKIKAKSSTNPGNKSKFVGVRQRPSGKWVAEIKDTTKKIRMWLGT 60

Query: 61  FNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETH 120
           F T EEAARAYDEAACLLRGSN RTNF     ++S +S KIRNLL HK +LK+SS + T 
Sbjct: 61  FETAEEAARAYDEAACLLRGSNTRTNFATPVFTNSHISLKIRNLLNHKRSLKQSSPSTTT 120

Query: 121 AHVAHSET--NQEMHMFDNNAVWSSCN 145
           +  +++         + DNN+   S N
Sbjct: 121 STGSNTTAPIKPSTIVCDNNSSLGSSN 147

[Close]

BLAST of CSPI04G12580 vs. NCBI nr
Match: gi|568871662|ref|XP_006489001.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Citrus sinensis])

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-27
Identity = 77/147 (52.38%), Postives = 94/147 (63.95%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAF-KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGT 60
           M   V++Q  + V+  K+  K       K  FVGVRQRPSGKWVAEIKD T  IRMWLGT
Sbjct: 1   MGQQVQRQRPKGVSSAKIKAKSSTNPGNKSKFVGVRQRPSGKWVAEIKDTTKKIRMWLGT 60

Query: 61  FNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETH 120
           F T EEAARAYDEAACLLRGSN RTNF     ++S +S KIRNLL HK +LK+SS + T 
Sbjct: 61  FETAEEAARAYDEAACLLRGSNTRTNFATPVFTNSHISLKIRNLLNHKRSLKQSSPSTTT 120

Query: 121 AHVAHSET--NQEMHMFDNNAVWSSCN 145
           +  +++         + DNN+   S N
Sbjct: 121 STGSNTTAPIKPSTIVCDNNSSLGSSN 147

[Close]

BLAST of CSPI04G12580 vs. NCBI nr
Match: gi|923598038|ref|XP_013740238.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Brassica napus])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 70/106 (66.04%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 6   EKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEE 65
           EK EH     K   K   K + K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EE
Sbjct: 7   EKMEHHQTTQKQKIKKKSKGTNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEE 66

Query: 66  AARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLK 112
           AARAYDEAACLLRGSN RTNF     ++S LS KIRNLL  K +LK
Sbjct: 67  AARAYDEAACLLRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSLK 112

The following BLAST results are available for this feature:

BLAST of CSPI04G12580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RA211_ARATH	4.3e-27	70.00	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2...	[more]
CRF2_ARATH	8.4e-15	53.62	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE...	[more]
ERF1_ORYSJ	1.9e-14	54.29	Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=ER...	[more]
WIN1_ARATH	4.2e-14	57.97	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE...	[more]
RAP22_ARATH	4.2e-14	55.71	Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-...	[more]

BLAST of CSPI04G12580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1N6_CUCSA	1.1e-117	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1	[more]
A0A067EKK6_CITSI	6.7e-27	52.38	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023169mg PE=4 SV=1	[more]
B9GY71_POPTR	1.1e-26	67.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21090g PE=4 SV=1	[more]
D7SLK5_VITVI	2.0e-26	50.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00490 PE=4 SV=...	[more]
A0A067L4B8_JATCU	4.3e-26	70.79	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01876 PE=4 SV=1	[more]

BLAST of CSPI04G12580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19790.1	2.4e-28	70.00	related to AP2 11	[more]
AT4G23750.1	4.8e-16	53.62	cytokinin response factor 2	[more]
AT1G15360.1	2.4e-15	57.97	Integrase-type DNA-binding superfamily protein	[more]
AT3G14230.1	2.4e-15	55.71	related to AP2 2	[more]
AT4G34410.1	3.1e-15	47.42	redox responsive transcription factor 1	[more]

BLAST of CSPI04G12580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463881\|ref\|XP_004149659.1\|	1.5e-117	99.53	PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus]	[more]
gi\|659098050\|ref\|XP_008449953.1\|	8.5e-108	91.94	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo]	[more]
gi\|641835470\|gb\|KDO54445.1\|	9.6e-27	52.38	hypothetical protein CISIN_1g023169mg [Citrus sinensis]	[more]
gi\|568871662\|ref\|XP_006489001.1\|	9.6e-27	52.38	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Citrus sinensis]	[more]
gi\|923598038\|ref\|XP_013740238.1\|	1.6e-26	66.04	PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Brassica napus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048528	post-embryonic root development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12580.1	CSPI04G12580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 53..69 score: 1.4E-7coord: 31..42 score: 1.
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 30..87 score: 1.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 31..79 score: 4.4
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 30..93 score: 2.4
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 30..87 score: 19
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 31..87 score: 2.09
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 28..114 score: 9.2
None	No IPR available	PANTHER	PTHR31194:SF5	SUBFAMILY NOT NAMED	coord: 28..114 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G12580	Csa4G268100	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G12580	MELO3C014722	Melon (DHL92) v3.5.1	cpimeB289
CSPI04G12580	Lsi10G009240	Bottle gourd (USVL1VR-Ls)	cpilsiB245
CSPI04G12580	MELO3C014722.2	Melon (DHL92) v3.6.1	cpimedB283
CSPI04G12580	CsaV3_4G017490	Cucumber (Chinese Long) v3	cpicucB221
CSPI04G12580	Bhi10G000393	Wax gourd	cpiwgoB394
CSPI04G12580	Cucsa.152770	Cucumber (Gy14) v1	cgycpiB225
CSPI04G12580	CmaCh20G000110	Cucurbita maxima (Rimu)	cmacpiB554
CSPI04G12580	Carg06965	Silver-seed gourd	carcpiB0559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G12580	Cucumber (Gy14) v2	cgybcpiB171
CSPI04G12580	Cucumber (Gy14) v2	cgybcpiB175
CSPI04G12580	Silver-seed gourd	carcpiB0542
CSPI04G12580	Cucumber (Chinese Long) v3	cpicucB216
CSPI04G12580	Watermelon (97103) v2	cpiwmbB294
CSPI04G12580	Cucurbita maxima (Rimu)	cmacpiB612
CSPI04G12580	Cucurbita moschata (Rifu)	cmocpiB543
CSPI04G12580	Cucurbita moschata (Rifu)	cmocpiB603
CSPI04G12580	Watermelon (Charleston Gray)	cpiwcgB303
CSPI04G12580	Watermelon (97103) v1	cpiwmB353
CSPI04G12580	Cucurbita pepo (Zucchini)	cpecpiB282
CSPI04G12580	Cucurbita pepo (Zucchini)	cpecpiB730