Cucsa.152770 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.152770
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ethylene-responsive transcription factor
Location	scaffold01124 : 121697 .. 122568 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTACATATTTTTTAACCAAATCGAAAAAGGAAATAGCACATGTTTGATCCATCCTAATTCCCAACATCGTGCTGCCACGAGTTTCTTGATTTTCCAAGGAAATAAAGTTGTTGACCACTCAGTAATTGGCCAAATCTCTCTTCACTTGGACGAATAGAGGAAAGCAACGCAGGCATTCATTTGGTGGTCTTATAATTAAATAAAATCAACATACATGCTGACATGACAAGAAGACGAAGACGAGGACACCACTAAGAACTAACAACGTAAAGACCTTCCACTTCCACATGCTGCCATTATAAAACCAATTCCATTTCTAAAATCTGCATTGGAGTCTGTAGATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGA

mRNA sequence

TTTTACATATTTTTTAACCAAATCGAAAAAGGAAATAGCACATGTTTGATCCATCCTAATTCCCAACATCGTGCTGCCACGAGTTTCTTGATTTTCCAAGGAAATAAAGTTGTTGACCACTCAAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGA

Coding sequence (CDS)

TTTTACATATTTTTTAACCAAATCGAAAAAGGAAATAGCACATGTTTGATCCATCCTAATTCCCAACATCGTGCTGCCACGAGTTTCTTGATTTTCCAAGGAAATAAAGTTGTTGACCACTCAAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGA

Protein sequence

FYIFFNQIEKGNSTCLIHPNSQHRAATSFLIFQGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAHSGAAAMEKLRWVFVTSPIHAAIFLLGSILIWMSLCLH*

Homology

[Close]

BLAST of Cucsa.152770 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-27
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 43  RSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNART 102
           +  K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAACLLRGSN RT
Sbjct: 16  KGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRT 75

Query: 103 NFTLASNSSSALSFKIRNLLIHKITLKR 131
           NF     ++S LS KIRNLL  K ++K+
Sbjct: 76  NFANHFPNNSQLSLKIRNLLHQKQSMKQ 103

[Close]

BLAST of Cucsa.152770 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 44  SGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTN 103
           +G++ F GVRQRP GKW AEI+D    +R+WLGT+NT EEAA  YD AA  LRG +A TN
Sbjct: 117 TGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN 176

Query: 104 FTLASNSSS 113
           F++   +++
Sbjct: 177 FSVTPTTAT 185

[Close]

BLAST of Cucsa.152770 vs. Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.2e-15
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 41  SKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNA 100
           +KR  K  F G+RQRP GKW AEI+D    +R+WLGTFN+ EEAARAYD  A  +RG  A
Sbjct: 112 AKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKA 171

Query: 101 RTNFTLASNSS 112
           + NF  A  ++
Sbjct: 172 KVNFPEAPTTA 182

[Close]

BLAST of Cucsa.152770 vs. Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 9.2e-15
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 41  SKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNA 100
           SKR  K  + G+RQRP GKW AEI+D     R WLGTF+T EEAARAYD AA  +RG+ A
Sbjct: 120 SKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKA 179

Query: 101 RTNFTLASNSS 112
           + NF    N S
Sbjct: 180 KVNFPEEKNPS 190

[Close]

BLAST of Cucsa.152770 vs. Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-14
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 35  NKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACL 94
           +K      R  KR + GVRQRP GKW AEI+D     R+WLGTF+T E AARAYDEAA  
Sbjct: 63  SKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALR 122

Query: 95  LRGSNARTNF 105
            RG+ A+ NF
Sbjct: 123 FRGNKAKLNF 132

[Close]

BLAST of Cucsa.152770 vs. TrEMBL
Match: A0A0A0L1N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.8e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 42  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 101
           KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR
Sbjct: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83

Query: 102 TNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAH 140
           TNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAH
Sbjct: 84  TNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAH 121

[Close]

BLAST of Cucsa.152770 vs. TrEMBL
Match: A0A0S3RWH1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G242100 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1


Query: 19  PNSQHRAATSFLIFQGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 78
           PN QH+ +    + +G K+   S+ +    FVGVRQRPSG+WVAEIKD T  IRMWLGTF
Sbjct: 8   PNLQHQKS-GIAVTRGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTF 67

Query: 79  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 138
            T EEAARAYDEAACLLRGSN RTNF    +  S L+ +IRNLL +K  +K+       A
Sbjct: 68  ETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANVIA 127

Query: 139 HSGAAAMEKL 149
           ++  AA+ ++
Sbjct: 128 NANNAAVPRV 136

[Close]

BLAST of Cucsa.152770 vs. TrEMBL
Match: A0A0L9U6X7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g193000 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1


Query: 19  PNSQHRAATSFLIFQGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 78
           PN QH+ +    + +G K+   S+ +    FVGVRQRPSG+WVAEIKD T  IRMWLGTF
Sbjct: 8   PNLQHQKS-GIAVTRGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTF 67

Query: 79  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 138
            T EEAARAYDEAACLLRGSN RTNF    +  S L+ +IRNLL +K  +K+       A
Sbjct: 68  ETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANVIA 127

Query: 139 HSGAAAMEKL 149
           ++  AA+ ++
Sbjct: 128 NANNAAVPRV 136

[Close]

BLAST of Cucsa.152770 vs. TrEMBL
Match: A0A078DT12_BRANA (BnaA10g15390D protein OS=Brassica napus GN=BnaA10g15390D PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 33  QGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAA 92
           Q  K  + SK + K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAA
Sbjct: 7   QKQKTKEKSKSNNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAA 66

Query: 93  CLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKR 131
           CLLRGSN RTNF     ++S LS KIRNLL  K T+K+
Sbjct: 67  CLLRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQTMKQ 104

[Close]

BLAST of Cucsa.152770 vs. TrEMBL
Match: M4CDI1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 33  QGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAA 92
           Q  K  + SK + K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAA
Sbjct: 7   QKQKTKEKSKSNNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAA 66

Query: 93  CLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKR 131
           CLLRGSN RTNF     ++S LS KIRNLL  K T+K+
Sbjct: 67  CLLRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQTMKQ 104

[Close]

BLAST of Cucsa.152770 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-28
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 43  RSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNART 102
           +  K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAACLLRGSN RT
Sbjct: 16  KGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRT 75

Query: 103 NFTLASNSSSALSFKIRNLLIHKITLKR 131
           NF     ++S LS KIRNLL  K ++K+
Sbjct: 76  NFANHFPNNSQLSLKIRNLLHQKQSMKQ 103

[Close]

BLAST of Cucsa.152770 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-16
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 44  SGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTN 103
           +G++ F GVRQRP GKW AEI+D    +R+WLGT+NT EEAA  YD AA  LRG +A TN
Sbjct: 117 TGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN 176

Query: 104 FTLASNSSS 113
           F++   +++
Sbjct: 177 FSVTPTTAT 185

[Close]

BLAST of Cucsa.152770 vs. TAIR10
Match: AT3G14230.1 (AT3G14230.1 related to AP2 2)

HSP 1 Score: 81.6 bits (200), Expect = 5.2e-16
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 41  SKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNA 100
           SKR  K  + G+RQRP GKW AEI+D     R WLGTF+T EEAARAYD AA  +RG+ A
Sbjct: 120 SKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKA 179

Query: 101 RTNFTLASNSS 112
           + NF    N S
Sbjct: 180 KVNFPEEKNPS 190

[Close]

BLAST of Cucsa.152770 vs. TAIR10
Match: AT5G50080.1 (AT5G50080.1 ethylene response factor 110)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 35  NKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACL 94
           +K      R  KR + GVRQRP GKW AEI+D     R+WLGTF+T E AARAYDEAA  
Sbjct: 63  SKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALR 122

Query: 95  LRGSNARTNF 105
            RG+ A+ NF
Sbjct: 123 FRGNKAKLNF 132

[Close]

BLAST of Cucsa.152770 vs. TAIR10
Match: AT1G15360.1 (AT1G15360.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 47  RSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTNFTL 106
           + F GVRQR  G WVAEI+      R+WLGTF T EEAARAYDEAA L+ G NA+TNF L
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 107 ASNSSSALS 116
            +N++   S
Sbjct: 65  NNNNTGETS 73

[Close]

BLAST of Cucsa.152770 vs. NCBI nr
Match: gi|449463881|ref|XP_004149659.1| (PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 42  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 101
           KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR
Sbjct: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83

Query: 102 TNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAH 140
           TNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAH
Sbjct: 84  TNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAH 121

[Close]

BLAST of Cucsa.152770 vs. NCBI nr
Match: gi|659098050|ref|XP_008449953.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1


Query: 42  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 101
           KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNT EEAARAYDEAACLLRGSNAR
Sbjct: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTAEEAARAYDEAACLLRGSNAR 83

Query: 102 TNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAH 140
           TNFTLASNSSS LSFKIRNLLIHKITLKRSSITETHAH
Sbjct: 84  TNFTLASNSSSTLSFKIRNLLIHKITLKRSSITETHAH 121

[Close]

BLAST of Cucsa.152770 vs. NCBI nr
Match: gi|965670331|dbj|BAT84938.1| (hypothetical protein VIGAN_04242100 [Vigna angularis var. angularis])

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1


Query: 19  PNSQHRAATSFLIFQGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 78
           PN QH+ +    + +G K+   S+ +    FVGVRQRPSG+WVAEIKD T  IRMWLGTF
Sbjct: 8   PNLQHQKS-GIAVTRGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTF 67

Query: 79  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 138
            T EEAARAYDEAACLLRGSN RTNF    +  S L+ +IRNLL +K  +K+       A
Sbjct: 68  ETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANVIA 127

Query: 139 HSGAAAMEKL 149
           ++  AA+ ++
Sbjct: 128 NANNAAVPRV 136

[Close]

BLAST of Cucsa.152770 vs. NCBI nr
Match: gi|920695323|gb|KOM38548.1| (hypothetical protein LR48_Vigan03g193000 [Vigna angularis])

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1


Query: 19  PNSQHRAATSFLIFQGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 78
           PN QH+ +    + +G K+   S+ +    FVGVRQRPSG+WVAEIKD T  IRMWLGTF
Sbjct: 8   PNLQHQKS-GIAVTRGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTF 67

Query: 79  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 138
            T EEAARAYDEAACLLRGSN RTNF    +  S L+ +IRNLL +K  +K+       A
Sbjct: 68  ETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANVIA 127

Query: 139 HSGAAAMEKL 149
           ++  AA+ ++
Sbjct: 128 NANNAAVPRV 136

[Close]

BLAST of Cucsa.152770 vs. NCBI nr
Match: gi|674940986|emb|CDX92500.1| (BnaA10g15390D [Brassica napus])

HSP 1 Score: 130.6 bits (327), Expect = 2.8e-27
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 33  QGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAA 92
           Q  K  + SK + K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAA
Sbjct: 7   QKQKTKEKSKSNNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAA 66

Query: 93  CLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKR 131
           CLLRGSN RTNF     ++S LS KIRNLL  K T+K+
Sbjct: 67  CLLRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQTMKQ 104

The following BLAST results are available for this feature:

BLAST of Cucsa.152770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RA211_ARATH	2.1e-27	70.45	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2...	[more]
CRF2_ARATH	5.4e-15	53.62	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE...	[more]
ERF1_ORYSJ	9.2e-15	53.52	Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=ER...	[more]
RAP22_ARATH	9.2e-15	56.34	Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-...	[more]
EF110_ARATH	2.1e-14	55.71	Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF11...	[more]

BLAST of Cucsa.152770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1N6_CUCSA	9.8e-48	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1	[more]
A0A0S3RWH1_PHAAN	1.5e-27	52.31	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G242100 PE=...	[more]
A0A0L9U6X7_PHAAN	1.5e-27	52.31	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g193000 PE=4 SV=1	[more]
A0A078DT12_BRANA	1.9e-27	68.37	BnaA10g15390D protein OS=Brassica napus GN=BnaA10g15390D PE=4 SV=1	[more]
M4CDI1_BRARP	1.9e-27	68.37	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Cucsa.152770 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19790.1	1.2e-28	70.45	related to AP2 11	[more]
AT4G23750.1	3.0e-16	53.62	cytokinin response factor 2	[more]
AT3G14230.1	5.2e-16	56.34	related to AP2 2	[more]
AT5G50080.1	1.2e-15	55.71	ethylene response factor 110	[more]
AT1G15360.1	1.5e-15	57.97	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Cucsa.152770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463881\|ref\|XP_004149659.1\|	1.4e-47	100.00	PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus]	[more]
gi\|659098050\|ref\|XP_008449953.1\|	3.5e-46	97.96	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo]	[more]
gi\|965670331\|dbj\|BAT84938.1\|	2.1e-27	52.31	hypothetical protein VIGAN_04242100 [Vigna angularis var. angularis]	[more]
gi\|920695323\|gb\|KOM38548.1\|	2.1e-27	52.31	hypothetical protein LR48_Vigan03g193000 [Vigna angularis]	[more]
gi\|674940986\|emb\|CDX92500.1\|	2.8e-27	68.37	BnaA10g15390D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048528	post-embryonic root development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.152770.1	Cucsa.152770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 71..87 score: 1.1E-7coord: 49..60 score: 1.
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 48..105 score: 9.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 49..97 score: 3.1
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 48..111 score: 2.4
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 48..105 score: 19
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 49..105 score: 1.44
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 46..132 score: 9.2
None	No IPR available	PANTHER	PTHR31194:SF5	SUBFAMILY NOT NAMED	coord: 46..132 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.152770	Csa4G268100	Cucumber (Chinese Long) v2	cgycuB220
Cucsa.152770	MELO3C014722	Melon (DHL92) v3.5.1	cgymeB257
Cucsa.152770	CSPI04G12580	Wild cucumber (PI 183967)	cgycpiB225
Cucsa.152770	CmaCh20G000110	Cucurbita maxima (Rimu)	cgycmaB0423
Cucsa.152770	Lsi10G009240	Bottle gourd (USVL1VR-Ls)	cgylsiB245
Cucsa.152770	MELO3C014722.2	Melon (DHL92) v3.6.1	cgymedB255
Cucsa.152770	CsaV3_4G017490	Cucumber (Chinese Long) v3	cgycucB232
Cucsa.152770	Bhi10G000393	Wax gourd	cgywgoB298
Cucsa.152770	Carg06965	Silver-seed gourd	carcgyB0603

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.152770	Silver-seed gourd	carcgyB0580
Cucsa.152770	Watermelon (97103) v2	cgywmbB259
Cucsa.152770	Cucurbita maxima (Rimu)	cgycmaB0424
Cucsa.152770	Cucurbita moschata (Rifu)	cgycmoB0423
Cucsa.152770	Cucurbita moschata (Rifu)	cgycmoB0424
Cucsa.152770	Watermelon (Charleston Gray)	cgywcgB258
Cucsa.152770	Watermelon (97103) v1	cgywmB272
Cucsa.152770	Cucurbita pepo (Zucchini)	cgycpeB0409
Cucsa.152770	Cucurbita pepo (Zucchini)	cgycpeB0410