Cucsa.152770.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTTACATATTTTTTAACCAAATCGAAAAAGGAAATAGCACATGTTTGATCCATCCTAATTCCCAACATCGTGCTGCCACGAGTTTCTTGATTTTCCAAGGAAATAAAGTTGTTGACCACTCAGTAATTGGCCAAATCTCTCTTCACTTGGACGAATAGAGGAAAGCAACGCAGGCATTCATTTGGTGGTCTTATAATTAAATAAAATCAACATACATGCTGACATGACAAGAAGACGAAGACGAGGACACCACTAAGAACTAACAACGTAAAGACCTTCCACTTCCACATGCTGCCATTATAAAACCAATTCCATTTCTAAAATCTGCATTGGAGTCTGTAGATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGA TTTTACATATTTTTTAACCAAATCGAAAAAGGAAATAGCACATGTTTGATCCATCCTAATTCCCAACATCGTGCTGCCACGAGTTTCTTGATTTTCCAAGGAAATAAAGTTGTTGACCACTCAAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGA TTTTACATATTTTTTAACCAAATCGAAAAAGGAAATAGCACATGTTTGATCCATCCTAATTCCCAACATCGTGCTGCCACGAGTTTCTTGATTTTCCAAGGAAATAAAGTTGTTGACCACTCAAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGA FYIFFNQIEKGNSTCLIHPNSQHRAATSFLIFQGNKVVDHSKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHAHSGAAAMEKLRWVFVTSPIHAAIFLLGSILIWMSLCLH*
BLAST of Cucsa.152770.1 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.1e-27 Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 5.4e-15 Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 9.2e-15 Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2) HSP 1 Score: 81.6 bits (200), Expect = 9.2e-15 Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2) HSP 1 Score: 80.5 bits (197), Expect = 2.1e-14 Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TrEMBL
Match: A0A0A0L1N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 9.8e-48 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TrEMBL
Match: A0A0S3RWH1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G242100 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27 Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TrEMBL
Match: A0A0L9U6X7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g193000 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27 Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TrEMBL
Match: A0A078DT12_BRANA (BnaA10g15390D protein OS=Brassica napus GN=BnaA10g15390D PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27 Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TrEMBL
Match: M4CDI1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27 Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11) HSP 1 Score: 123.6 bits (309), Expect = 1.2e-28 Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2) HSP 1 Score: 82.4 bits (202), Expect = 3.0e-16 Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TAIR10
Match: AT3G14230.1 (AT3G14230.1 related to AP2 2) HSP 1 Score: 81.6 bits (200), Expect = 5.2e-16 Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TAIR10
Match: AT5G50080.1 (AT5G50080.1 ethylene response factor 110) HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15 Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. TAIR10
Match: AT1G15360.1 (AT1G15360.1 Integrase-type DNA-binding superfamily protein) HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15 Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. NCBI nr
Match: gi|449463881|ref|XP_004149659.1| (PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus]) HSP 1 Score: 198.0 bits (502), Expect = 1.4e-47 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. NCBI nr
Match: gi|659098050|ref|XP_008449953.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo]) HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46 Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. NCBI nr
Match: gi|965670331|dbj|BAT84938.1| (hypothetical protein VIGAN_04242100 [Vigna angularis var. angularis]) HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27 Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. NCBI nr
Match: gi|920695323|gb|KOM38548.1| (hypothetical protein LR48_Vigan03g193000 [Vigna angularis]) HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27 Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
BLAST of Cucsa.152770.1 vs. NCBI nr
Match: gi|674940986|emb|CDX92500.1| (BnaA10g15390D [Brassica napus]) HSP 1 Score: 130.6 bits (327), Expect = 2.8e-27 Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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