Lsi10G009240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ethylene-responsive transcription factor
Location	chr10 : 13706294 .. 13706863 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTTCAGTTGAGATAAGACAGCATAAAGAGGTTAAACTTAAATCAGTTGGGAAATGCAGTAACAACAGATCTGGTAAACGCAGCTTTGTTGGTGTTAGGCAAAGGCCTTCTGGGAAATGGGTTGCAGAGATCAAAGATACAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACTCAGCGGAGGAGGCTGCAACAGCTTACGATGAAGCCGCCCGCCTCCTCCGCGGTCCTAATGCTCGAACCAACTTCAATCATACTTCCAAATCCACCTCCACCCTCTCTTTCAAAATCAGAAACCTTCTCACCAACAAAATCGCTTTGAAACGAACCTCAATCATTGAAACTCATGCTCCAACCAGCCAAGAGATGCACATGTTTCATAATAGTTCATTCTGCTGTGGAGAATTTGAGATGGGGTTTTGTCACTTCACCCATTCTTGCTGCCATCTTCCTCTTGAGTTCAACTTGGATATGGATGAGCCTGTGTGTGCATTCAATGGAATGACTGAACATTTAGATAATACATATAATGATGCTTTTGATACTGAGCCTCACATATGA

mRNA sequence

ATGGAGGGTTCAGTTGAGATAAGACAGCATAAAGAGGTTAAACTTAAATCAGTTGGGAAATGCAGTAACAACAGATCTGGTAAACGCAGCTTTGTTGGTGTTAGGCAAAGGCCTTCTGGGAAATGGGTTGCAGAGATCAAAGATACAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACTCAGCGGAGGAGGCTGCAACAGCTTACGATGAAGCCGCCCGCCTCCTCCGCGGTCCTAATGCTCGAACCAACTTCAATCATACTTCCAAATCCACCTCCACCCTCTCTTTCAAAATCAGAAACCTTCTCACCAACAAAATCGCTTTGAAACGAACCTCAATCATTGAAACTCATGCTCCAACCAGCCAAGAGATGCACATGTTTCATAATAGTTCATTCTGCTGTGGAGAATTTGAGATGGGGTTTTGTCACTTCACCCATTCTTGCTGCCATCTTCCTCTTGAGTTCAACTTGGATATGGATGAGCCTGTGTGTGCATTCAATGGAATGACTGAACATTTAGATAATACATATAATGATGCTTTTGATACTGAGCCTCACATATGA

Coding sequence (CDS)

ATGGAGGGTTCAGTTGAGATAAGACAGCATAAAGAGGTTAAACTTAAATCAGTTGGGAAATGCAGTAACAACAGATCTGGTAAACGCAGCTTTGTTGGTGTTAGGCAAAGGCCTTCTGGGAAATGGGTTGCAGAGATCAAAGATACAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACTCAGCGGAGGAGGCTGCAACAGCTTACGATGAAGCCGCCCGCCTCCTCCGCGGTCCTAATGCTCGAACCAACTTCAATCATACTTCCAAATCCACCTCCACCCTCTCTTTCAAAATCAGAAACCTTCTCACCAACAAAATCGCTTTGAAACGAACCTCAATCATTGAAACTCATGCTCCAACCAGCCAAGAGATGCACATGTTTCATAATAGTTCATTCTGCTGTGGAGAATTTGAGATGGGGTTTTGTCACTTCACCCATTCTTGCTGCCATCTTCCTCTTGAGTTCAACTTGGATATGGATGAGCCTGTGTGTGCATTCAATGGAATGACTGAACATTTAGATAATACATATAATGATGCTTTTGATACTGAGCCTCACATATGA

Protein sequence

MEGSVEIRQHKEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHAPTSQEMHMFHNSSFCCGEFEMGFCHFTHSCCHLPLEFNLDMDEPVCAFNGMTEHLDNTYNDAFDTEPHI

Homology

[Close]

BLAST of Lsi10G009240 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = 1


Query: 24  NRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPNAR 83
           ++  K  FVGVRQRPSGKWVAEIKDTT  IRMWLGTF +AEEAA AYDEAA LLRG N R
Sbjct: 15  SKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTR 74

Query: 84  TNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHAPTS 124
           TNF +   + S LS KIRNLL  K ++K+    + H P S
Sbjct: 75  TNFANHFPNNSQLSLKIRNLLHQKQSMKQQQ-QQQHKPVS 113

[Close]

BLAST of Lsi10G009240 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-16
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 8   RQHKEVKLKS----VGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSA 67
           RQ + VK +S    V   +   +G++ F GVRQRP GKW AEI+D    +R+WLGT+N+A
Sbjct: 95  RQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTA 154

Query: 68  EEAATAYDEAARLLRGPNARTNFNHT 90
           EEAA  YD AA  LRGP+A TNF+ T
Sbjct: 155 EEAAMVYDNAAIQLRGPDALTNFSVT 180

[Close]

BLAST of Lsi10G009240 vs. Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-15
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 22  SNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPN 81
           S  R  K  F G+RQRP GKW AEI+D    +R+WLGTFNSAEEAA AYD  AR +RG  
Sbjct: 111 SAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKK 170

Query: 82  ARTNF 87
           A+ NF
Sbjct: 171 AKVNF 175

[Close]

BLAST of Lsi10G009240 vs. Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-15
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 29  RSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPNARTNF 87
           R F GVRQRP GKW AEI+D +  +R+WLGTF++AEEAA  YD AA  LRGPNA  NF
Sbjct: 85  RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142

[Close]

BLAST of Lsi10G009240 vs. Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 1


Query: 11  KEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAY 70
           K V+     + S+ R  K  + G+RQRP GKW AEI+D     R WLGTF++AEEAA AY
Sbjct: 108 KTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAY 167

Query: 71  DEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHAPTSQEMHMFH 130
           D AAR +RG  A+ NF    K+ S +S K  +  TN +        ++     Q  H+  
Sbjct: 168 DAAARRIRGTKAKVNFPE-EKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHL-- 227

Query: 131 NSSFCCGEFEMGF 144
           +  +C   F+  F
Sbjct: 228 SQQYCNNSFDNSF 237

[Close]

BLAST of Lsi10G009240 vs. TrEMBL
Match: A0A0A0L1N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 136/193 (70.47%), Postives = 151/193 (78.24%), Query Frame = 1


Query: 1   MEGSVEIRQHKEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTF 60
           ME SVE ++H++V  K VGKC   RSGKRSFVGVRQRPSGKWVAEIKD THDIRMWLGTF
Sbjct: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NSAEEAATAYDEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHA 120
           N+ EEAA AYDEAA LLRG NARTNF   S S+S LSFKIRNLL +KI LKR+SI ETHA
Sbjct: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 -----PTSQEMHMFHNS---SFCCGEFEMGFCHFTHSCCHLPLEFNLDMDEPVCAFNGMT 180
                 T+QEMHMF N+   S C GE E+GFCHFTHSCC LPL FN DMDE + A NG+T
Sbjct: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180

Query: 181 EHLDNTYNDAFDT 186
           +HL N Y+DAFDT
Sbjct: 181 QHLGNAYDDAFDT 193

[Close]

BLAST of Lsi10G009240 vs. TrEMBL
Match: K4ASC9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-25
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 1


Query: 28  KRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPNARTNFN 87
           +R FVGVRQRPSGKWVAEIK+TT  IRMWLGTF+SAEEAA AYDEAA LLRG NARTNF+
Sbjct: 16  QRKFVGVRQRPSGKWVAEIKNTTQKIRMWLGTFDSAEEAARAYDEAACLLRGSNARTNFH 75

Query: 88  HTSKSTSTLSFKIRNLLT-----NKIALKRTSIIETHAPTSQEMH 128
           + +  +  LS KIRNL+      NKI  K TS   +  PTS  +H
Sbjct: 76  NHTPVSPALSMKIRNLINHKKSLNKINHKSTSTSSSSIPTSSTIH 120

[Close]

BLAST of Lsi10G009240 vs. TrEMBL
Match: B9GY71_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21090g PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.6e-25
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 20  KCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRG 79
           +C +N S K  FVGVRQRPSGKWVAEIKDTT  IRMWLGTF +AEEAA AYDEAA LLRG
Sbjct: 24  RCLSNNS-KNKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRG 83

Query: 80  PNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTS 115
            N RTNFN    S S +S KIRNLL  K +LK+ S
Sbjct: 84  SNTRTNFNTHVSSNSPISTKIRNLLNRKRSLKQNS 117

[Close]

BLAST of Lsi10G009240 vs. TrEMBL
Match: A0A067EKK6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023169mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 69/121 (57.02%), Postives = 78/121 (64.46%), Query Frame = 1


Query: 16  KSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAAR 75
           K   K S N   K  FVGVRQRPSGKWVAEIKDTT  IRMWLGTF +AEEAA AYDEAA 
Sbjct: 17  KIKAKSSTNPGNKSKFVGVRQRPSGKWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAAC 76

Query: 76  LLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHAPTSQEMHMFHNSSFC 135
           LLRG N RTNF     + S +S KIRNLL +K +LK++S   T +  S        S+  
Sbjct: 77  LLRGSNTRTNFATPVFTNSHISLKIRNLLNHKRSLKQSSPSTTTSTGSNTTAPIKPSTIV 136

Query: 136 C 137
           C
Sbjct: 137 C 137

[Close]

BLAST of Lsi10G009240 vs. TrEMBL
Match: A0A078C1K8_BRANA (BnaC03g09750D protein OS=Brassica napus GN=BnaC03g09750D PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 70/126 (55.56%), Postives = 83/126 (65.87%), Query Frame = 1


Query: 9   QHKEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAAT 68
           Q +++K KS G      + K  FVGVRQRPSGKWVAEIKDTT  IRMWLGTF +AEEAA 
Sbjct: 8   QKQKIKRKSKG------TNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAAR 67

Query: 69  AYDEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHAPTSQEMHM 128
           AYDEAA LLRG N RTNF +   + S LS KIRNLL  K +LK     + + P S  +  
Sbjct: 68  AYDEAACLLRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSLKHQQQQQQNKPASSFVE- 125

Query: 129 FHNSSF 135
            HN ++
Sbjct: 128 -HNINY 125

[Close]

BLAST of Lsi10G009240 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = 1


Query: 24  NRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPNAR 83
           ++  K  FVGVRQRPSGKWVAEIKDTT  IRMWLGTF +AEEAA AYDEAA LLRG N R
Sbjct: 15  SKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTR 74

Query: 84  TNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHAPTS 124
           TNF +   + S LS KIRNLL  K ++K+    + H P S
Sbjct: 75  TNFANHFPNNSQLSLKIRNLLHQKQSMKQQQ-QQQHKPVS 113

[Close]

BLAST of Lsi10G009240 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-17
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 8   RQHKEVKLKS----VGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSA 67
           RQ + VK +S    V   +   +G++ F GVRQRP GKW AEI+D    +R+WLGT+N+A
Sbjct: 95  RQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTA 154

Query: 68  EEAATAYDEAARLLRGPNARTNFNHT 90
           EEAA  YD AA  LRGP+A TNF+ T
Sbjct: 155 EEAAMVYDNAAIQLRGPDALTNFSVT 180

[Close]

BLAST of Lsi10G009240 vs. TAIR10
Match: AT4G11140.1 (AT4G11140.1 cytokinin response factor 1)

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-16
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 29  RSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPNARTNF 87
           R F GVRQRP GKW AEI+D +  +R+WLGTF++AEEAA  YD AA  LRGPNA  NF
Sbjct: 85  RKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142

[Close]

BLAST of Lsi10G009240 vs. TAIR10
Match: AT3G14230.1 (AT3G14230.1 related to AP2 2)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 1


Query: 11  KEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAY 70
           K V+     + S+ R  K  + G+RQRP GKW AEI+D     R WLGTF++AEEAA AY
Sbjct: 108 KTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAY 167

Query: 71  DEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHAPTSQEMHMFH 130
           D AAR +RG  A+ NF    K+ S +S K  +  TN +        ++     Q  H+  
Sbjct: 168 DAAARRIRGTKAKVNFPE-EKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHL-- 227

Query: 131 NSSFCCGEFEMGF 144
           +  +C   F+  F
Sbjct: 228 SQQYCNNSFDNSF 237

[Close]

BLAST of Lsi10G009240 vs. TAIR10
Match: AT1G53910.1 (AT1G53910.1 related to AP2 12)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-15
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 22  SNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRGPN 81
           S NR  K  + G+RQRP GKW AEI+D     R+WLGTF +AEEAA AYD AAR +RG  
Sbjct: 116 SANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSK 175

Query: 82  ARTNFNHTSKSTSTLSFKIRNLLTNKIA 110
           A+ NF   +   ++    ++  L   +A
Sbjct: 176 AKVNFPEENMKANSQKRSVKANLQKPVA 203

[Close]

BLAST of Lsi10G009240 vs. NCBI nr
Match: gi|659098050|ref|XP_008449953.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 6.9e-69
Identity = 139/193 (72.02%), Postives = 153/193 (79.27%), Query Frame = 1


Query: 1   MEGSVEIRQHKEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTF 60
           MEGSVE ++ ++V  K VGKC   RSGKRSFVGVRQRPSGKWVAEIKD THDIRMWLGTF
Sbjct: 1   MEGSVEKQERRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NSAEEAATAYDEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHA 120
           N+AEEAA AYDEAA LLRG NARTNF   S S+STLSFKIRNLL +KI LKR+SI ETHA
Sbjct: 61  NTAEEAARAYDEAACLLRGSNARTNFTLASNSSSTLSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 -----PTSQEMHMFHNSSF---CCGEFEMGFCHFTHSCCHLPLEFNLDMDEPVCAFNGMT 180
                 T+QE HMF N +    C GE E+GFCHFTHSCCHLPL FN DMDE + A NG+T
Sbjct: 121 HVAHSETNQETHMFDNDTVWNSCNGEIEVGFCHFTHSCCHLPLGFNFDMDESLSAPNGIT 180

Query: 181 EHLDNTYNDAFDT 186
           EHL NTY+DAFDT
Sbjct: 181 EHLGNTYDDAFDT 193

[Close]

BLAST of Lsi10G009240 vs. NCBI nr
Match: gi|449463881|ref|XP_004149659.1| (PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.7e-67
Identity = 136/193 (70.47%), Postives = 151/193 (78.24%), Query Frame = 1


Query: 1   MEGSVEIRQHKEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTF 60
           ME SVE ++H++V  K VGKC   RSGKRSFVGVRQRPSGKWVAEIKD THDIRMWLGTF
Sbjct: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NSAEEAATAYDEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTSIIETHA 120
           N+ EEAA AYDEAA LLRG NARTNF   S S+S LSFKIRNLL +KI LKR+SI ETHA
Sbjct: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 -----PTSQEMHMFHNS---SFCCGEFEMGFCHFTHSCCHLPLEFNLDMDEPVCAFNGMT 180
                 T+QEMHMF N+   S C GE E+GFCHFTHSCC LPL FN DMDE + A NG+T
Sbjct: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180

Query: 181 EHLDNTYNDAFDT 186
           +HL N Y+DAFDT
Sbjct: 181 QHLGNAYDDAFDT 193

[Close]

BLAST of Lsi10G009240 vs. NCBI nr
Match: gi|971562154|ref|XP_015167123.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Solanum tuberosum])

HSP 1 Score: 126.3 bits (316), Expect = 5.6e-26
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 17  SVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARL 76
           S+ KCS     +R FVGVRQRPSGKWVAEIK+TT  IRMWLGTF+SAEEAA AYDEAA L
Sbjct: 9   SIKKCSPKVQKQRKFVGVRQRPSGKWVAEIKNTTQKIRMWLGTFDSAEEAARAYDEAACL 68

Query: 77  LRGPNARTNF-NHTSKSTSTLSFKIRNLLTNKIALKR----TSIIETHAPTSQEMHMFHN 135
           LRG NARTNF NH       +S KIRNL+ +K +L +    TS I T   T QE  + ++
Sbjct: 69  LRGSNARTNFHNHAPPINPAVSMKIRNLINHKKSLNKSTSSTSTISTSTTTHQETALSND 128

[Close]

BLAST of Lsi10G009240 vs. NCBI nr
Match: gi|224075978|ref|XP_002304856.1| (hypothetical protein POPTR_0003s21090g [Populus trichocarpa])

HSP 1 Score: 122.5 bits (306), Expect = 8.0e-25
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 20  KCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFNSAEEAATAYDEAARLLRG 79
           +C +N S K  FVGVRQRPSGKWVAEIKDTT  IRMWLGTF +AEEAA AYDEAA LLRG
Sbjct: 24  RCLSNNS-KNKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRG 83

Query: 80  PNARTNFNHTSKSTSTLSFKIRNLLTNKIALKRTS 115
            N RTNFN    S S +S KIRNLL  K +LK+ S
Sbjct: 84  SNTRTNFNTHVSSNSPISTKIRNLLNRKRSLKQNS 117

[Close]

BLAST of Lsi10G009240 vs. NCBI nr
Match: gi|645215039|ref|XP_008221743.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Prunus mume])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 69/110 (62.73%), Postives = 78/110 (70.91%), Query Frame = 1


Query: 1   MEGSVEIRQHKEVKLKSVGKCSNNRSGKRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTF 60
           ME  V +  +K+ KLK+  KC         FVGVRQRPSGKWVAEIKDTT  IRMWLGTF
Sbjct: 13  MENGVSVSANKQSKLKT--KCK--------FVGVRQRPSGKWVAEIKDTTKKIRMWLGTF 72

Query: 61  NSAEEAATAYDEAARLLRGPNARTNFNHTSKSTSTLSFKIRNLLTNKIAL 111
            +AEEAA AYDEAA LLRG N RTNF+  + S S LS KIRNLL +K +L
Sbjct: 73  ETAEEAARAYDEAAYLLRGSNTRTNFSTHAPSNSPLSLKIRNLLNHKKSL 112

The following BLAST results are available for this feature:

BLAST of Lsi10G009240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RA211_ARATH	2.8e-25	63.00	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2...	[more]
CRF2_ARATH	5.2e-16	52.33	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE...	[more]
ERF1_ORYSJ	4.4e-15	60.00	Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=ER...	[more]
CRF1_ARATH	7.5e-15	65.52	Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE...	[more]
RAP22_ARATH	2.2e-14	37.59	Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-...	[more]

BLAST of Lsi10G009240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1N6_CUCSA	1.2e-67	70.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1	[more]
K4ASC9_SOLLC	4.3e-25	63.81	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9GY71_POPTR	5.6e-25	69.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21090g PE=4 SV=1	[more]
A0A067EKK6_CITSI	4.7e-24	57.02	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023169mg PE=4 SV=1	[more]
A0A078C1K8_BRANA	4.7e-24	55.56	BnaC03g09750D protein OS=Brassica napus GN=BnaC03g09750D PE=4 SV=1	[more]

BLAST of Lsi10G009240 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19790.1	1.6e-26	63.00	related to AP2 11	[more]
AT4G23750.1	2.9e-17	52.33	cytokinin response factor 2	[more]
AT4G11140.1	4.2e-16	65.52	cytokinin response factor 1	[more]
AT3G14230.1	1.2e-15	37.59	related to AP2 2	[more]
AT1G53910.1	2.1e-15	45.45	related to AP2 12	[more]

BLAST of Lsi10G009240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098050\|ref\|XP_008449953.1\|	6.9e-69	72.02	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo]	[more]
gi\|449463881\|ref\|XP_004149659.1\|	1.7e-67	70.47	PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus]	[more]
gi\|971562154\|ref\|XP_015167123.1\|	5.6e-26	57.72	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Solanum tuberosum]	[more]
gi\|224075978\|ref\|XP_002304856.1\|	8.0e-25	69.47	hypothetical protein POPTR_0003s21090g [Populus trichocarpa]	[more]
gi\|645215039\|ref\|XP_008221743.1\|	1.0e-24	62.73	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR017392	AP2/ERF-transcript_factor
IPR016177	DNA-bd_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0048528	post-embryonic root development
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009240.1	Lsi10G009240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 31..42 score: 4.6E-7coord: 53..69 score: 4.
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 30..88 score: 1.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 31..79 score: 1.3
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 30..93 score: 9.0
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 30..87 score: 19
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 31..88 score: 1.37
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 28..112 score: 2.4
None	No IPR available	PANTHER	PTHR31194:SF5	SUBFAMILY NOT NAMED	coord: 28..112 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G009240	Csa4G268100	Cucumber (Chinese Long) v2	culsiB246
Lsi10G009240	CSPI04G12580	Wild cucumber (PI 183967)	cpilsiB245
Lsi10G009240	Cucsa.152770	Cucumber (Gy14) v1	cgylsiB245
Lsi10G009240	CmaCh20G000110	Cucurbita maxima (Rimu)	cmalsiB500
Lsi10G009240	MELO3C014722	Melon (DHL92) v3.5.1	lsimeB072
Lsi10G009240	MELO3C014722.2	Melon (DHL92) v3.6.1	lsimedB074
Lsi10G009240	Bhi10G000393	Wax gourd	lsiwgoB079
Lsi10G009240	CsGy4G011700	Cucumber (Gy14) v2	cgyblsiB235
Lsi10G009240	Carg06965	Silver-seed gourd	carlsiB471
Lsi10G009240	CsaV3_4G017490	Cucumber (Chinese Long) v3	cuclsiB271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G009240	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G009240	Cucurbita moschata (Rifu)	cmolsiB484
Lsi10G009240	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G009240	Cucurbita pepo (Zucchini)	cpelsiB227
Lsi10G009240	Cucurbita pepo (Zucchini)	cpelsiB598
Lsi10G009240	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G009240	Watermelon (97103) v1	lsiwmB078
Lsi10G009240	Silver-seed gourd	carlsiB458
Lsi10G009240	Watermelon (97103) v2	lsiwmbB052