CSPI01G17020 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G17020
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 12839587 .. 12839916 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAACAGCAGCAGCAGCAACACCCCCATCGTTGGAAGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATTGTTCGTCCCAATTTCTCAAAGACATTTCCTCCGGTGATATGATTTTGGTTAAGAGCATTTGTGCTTCATGGGGAGTTTCTATTTCTTAG

mRNA sequence

ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAACAGCAGCAGCAGCAACACCCCCATCGTTGGAAGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATTGTTCGTCCCAATTTCTCAAAGACATTTCCTCCGGTGATATGATTTTGGTTAAGAGCATTTGTGCTTCATGGGGAGTTTCTATTTCTTAG

Coding sequence (CDS)

ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAACAGCAGCAGCAGCAACACCCCCATCGTTGGAAGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATTGTTCGTCCCAATTTCTCAAAGACATTTCCTCCGGTGATATGATTTTGGTTAAGAGCATTTGTGCTTCATGGGGAGTTTCTATTTCTTAG
Homology
[Close]
BLAST of CSPI01G17020 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-21
Identity = 57/105 (54.29%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 8   KLPLVLLVCIAILASSVTARPTAAAATPPS---LEDFSLFPCISFVPKATICVIDVLKNA 67
           KL LV + C AI A    A   A A T P     ED S FPC SFVP+AT C+IDV K+ 
Sbjct: 12  KLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFKHP 71

Query: 68  VSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           ++ HP+CC+AISKL  CSS F   I S DMI++KS+C SWG SIS
Sbjct: 72  IAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of CSPI01G17020 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-15
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 1 

Query: 5   AITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDVLKNA 64
           A  KLP++ LVCIAILA  V  R T       S +D +   C  F  +AT C+IDV+KN+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTR-TTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNS 62

Query: 65  VSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWG 106
           + PHPSCC AI KL+DC+ +  KD+ S D  L+K IC  WG
Sbjct: 63  MPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]
BLAST of CSPI01G17020 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 2   ATSAIT-KLPLVLLVCIAILASSVTARPTAAAATPPSL----EDFSLFPCISFVPKATIC 61
           +TSA T +L +V LVCI ILA SVTAR  A A +P  +    +D S   C  F+ +AT+C
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMC 65

Query: 62  VIDVLKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSIC 102
           V+DV+K  V+ HPSCC+AIS L+DC+ Q  + I   DM ++K IC
Sbjct: 66  VVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

[Close]
BLAST of CSPI01G17020 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21
Identity = 57/105 (54.29%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 8   KLPLVLLVCIAILASSVTARPTAAAATPPS---LEDFSLFPCISFVPKATICVIDVLKNA 67
           KL LV + C AI A    A   A A T P     ED S FPC SFVP+AT C+IDV K+ 
Sbjct: 12  KLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFKHP 71

Query: 68  VSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           ++ HP+CC+AISKL  CSS F   I S DMI++KS+C SWG SIS
Sbjct: 72  IAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASIS 116

[Close]
BLAST of CSPI01G17020 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 7.5e-15
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 1 

Query: 5   AITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDVLKNA 64
           A  KLP++ LVCIAILA  V  R T       S +D +   C  F  +AT C+IDV+KN+
Sbjct: 3   ASLKLPIIFLVCIAILALPVMTR-TTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNS 62

Query: 65  VSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWG 106
           + PHPSCC AI KL+DC+ +  KD+ S D  L+K IC  WG
Sbjct: 63  MPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]
BLAST of CSPI01G17020 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 2   ATSAIT-KLPLVLLVCIAILASSVTARPTAAAATPPSL----EDFSLFPCISFVPKATIC 61
           +TSA T +L +V LVCI ILA SVTAR  A A +P  +    +D S   C  F+ +AT+C
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMC 65

Query: 62  VIDVLKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSIC 102
           V+DV+K  V+ HPSCC+AIS L+DC+ Q  + I   DM ++K IC
Sbjct: 66  VVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

The following BLAST results are available for this feature:
BLAST of CSPI01G17020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G17020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYQ3_CUCSA3.7e-2154.29Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1[more]
A0A0A0LTE1_CUCSA5.2e-1548.51Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1[more]
A0A0A0LTD6_CUCSA1.1e-1248.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1[more]
BLAST of CSPI01G17020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G17020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210000|gb|KGN65096.1|5.3e-2154.29hypothetical protein Csa_1G212820 [Cucumis sativus][more]
gi|700210099|gb|KGN65195.1|7.5e-1548.51hypothetical protein Csa_1G263980 [Cucumis sativus][more]
gi|700210094|gb|KGN65190.1|1.6e-1248.57hypothetical protein Csa_1G263450 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17020.1CSPI01G17020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G17020MELO3C029641.2Melon (DHL92) v3.6.1cpimedB051
CSPI01G17020CsaV3_1G028100Cucumber (Chinese Long) v3cpicucB000
CSPI01G17020Cla97C06G120970Watermelon (97103) v2cpiwmbB068
CSPI01G17020Bhi02G000748Wax gourdcpiwgoB099
CSPI01G17020Cp4.1LG18g05380Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G17020Cp4.1LG04g09130Cucurbita pepo (Zucchini)cpecpiB640
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G17020Silver-seed gourdcarcpiB0138