CsaV3_1G028100 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028100
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 15211598 .. 15211942 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATCAGCTACCAAGTTACCACTTGTACTAATATTGCTATGCATTGCCATTTTAGCATCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCCACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAACGATTGTTCATCCAACTTTCTCAAAGACATCCCCACAGGCAAAATGATTTTGGTTAAGAGCGTTTGTGCTTCATGGGGAGTTTCTATTCCTTAG

mRNA sequence

ATGGCAACATCAGCTACCAAGTTACCACTTGTACTAATATTGCTATGCATTGCCATTTTAGCATCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCCACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAACGATTGTTCATCCAACTTTCTCAAAGACATCCCCACAGGCAAAATGATTTTGGTTAAGAGCGTTTGTGCTTCATGGGGAGTTTCTATTCCTTAG

Coding sequence (CDS)

ATGGCAACATCAGCTACCAAGTTACCACTTGTACTAATATTGCTATGCATTGCCATTTTAGCATCGTCTGTAGCGGCTCGTCCACCGATGGTGGGAGCAGCAGCGCCTAGTAAGCCATTGGGAACGGAGGAATATTTCTCTTTGTTCCCATGCATATCATTAGTTCCTCAAGCCACAAAATGTGTTATTGATGTGCTTAACAATACGGTTGCTCCTCATCCTTCTTGTTGCGAAGCCATTTCTAAACTCAACGATTGTTCATCCAACTTTCTCAAAGACATCCCCACAGGCAAAATGATTTTGGTTAAGAGCGTTTGTGCTTCATGGGGAGTTTCTATTCCTTAG

Protein sequence

MATSATKLPLVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWGVSIP

Homology

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BLAST of CsaV3_1G028100 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 1   MATSATKLP---LVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQ 60
           MA  + K P   L+L+ +C   + +  AA   +  A    +P  TE+  S FPC S VP+
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTED-ISFFPCFSFVPE 60

Query: 61  ATKCVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWGVSI 114
           ATKC+IDV  + +A HP+CC+AISKL  CSS+F   IP+  MI++KSVC SWG SI
Sbjct: 61  ATKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASI 115

[Close]

BLAST of CsaV3_1G028100 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 4.1e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 4   SATKLPLVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVI 63
           ++ KLP ++ L+CIAIL     A P M           T++  S+  C     +ATKC+I
Sbjct: 3   ASLKLP-IIFLVCIAIL-----ALPVMTRTTTTLDQFSTKDVASV-NCTVFTFEATKCMI 62

Query: 64  DVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWG 111
           DV+ N++ PHPSCC AI KLNDC+    KD+P+    L+K +C  WG
Sbjct: 63  DVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CsaV3_1G028100 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 2   ATSATKLPLVLI-LLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATK 61
           +TSA+ + L ++ L+CI ILA SV AR  M  A +P   L  E+  S   C   + +AT 
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTAR-TMAEAPSPVLVLFDEDDSSFSNCAPFILEATM 65

Query: 62  CVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVC 107
           CV+DV+   VA HPSCC+AIS LNDC+    + IP   M ++K +C
Sbjct: 66  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

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BLAST of CsaV3_1G028100 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 1   MATSATKLP---LVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQ 60
           MA  + K P   L+L+ +C   + +  AA   +  A    +P  TE+  S FPC S VP+
Sbjct: 1   MAAKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTED-ISFFPCFSFVPE 60

Query: 61  ATKCVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWGVSI 114
           ATKC+IDV  + +A HP+CC+AISKL  CSS+F   IP+  MI++KSVC SWG SI
Sbjct: 61  ATKCMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGASI 115

[Close]

BLAST of CsaV3_1G028100 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 4   SATKLPLVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVI 63
           ++ KLP ++ L+CIAIL     A P M           T++  S+  C     +ATKC+I
Sbjct: 3   ASLKLP-IIFLVCIAIL-----ALPVMTRTTTTLDQFSTKDVASV-NCTVFTFEATKCMI 62

Query: 64  DVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWG 111
           DV+ N++ PHPSCC AI KLNDC+    KD+P+    L+K +C  WG
Sbjct: 63  DVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWG 102

[Close]

BLAST of CsaV3_1G028100 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 2   ATSATKLPLVLI-LLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATK 61
           +TSA+ + L ++ L+CI ILA SV AR  M  A +P   L  E+  S   C   + +AT 
Sbjct: 6   STSASTIRLAIVFLVCIVILAPSVTAR-TMAEAPSPVLVLFDEDDSSFSNCAPFILEATM 65

Query: 62  CVIDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVC 107
           CV+DV+   VA HPSCC+AIS LNDC+    + IP   M ++K +C
Sbjct: 66  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKIC 108

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65096.1	1.6e-19	46.55	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
KGN65195.1	4.1e-12	41.12	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
KGN65190.1	5.1e-10	43.40	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]

BLAST of CsaV3_1G028100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYQ3\|A0A0A0LYQ3_CUCSA	1.0e-19	46.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]
tr\|A0A0A0LTE1\|A0A0A0LTE1_CUCSA	2.7e-12	41.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]
tr\|A0A0A0LTD6\|A0A0A0LTD6_CUCSA	3.3e-10	43.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G028100.1	CsaV3_1G028100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G028100	CSPI01G17020	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G028100	Bhi02G000748	Wax gourd	cucwgoB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G028100	Silver-seed gourd	carcucB0142
CsaV3_1G028100	Silver-seed gourd	carcucB0609
CsaV3_1G028100	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G028100	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G028100	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G028100	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G028100	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G028100	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G028100	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G028100	Bottle gourd (USVL1VR-Ls)	cuclsiB073
CsaV3_1G028100	Bottle gourd (USVL1VR-Ls)	cuclsiB084
CsaV3_1G028100	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G028100	Melon (DHL92) v3.6.1	cucmedB052
CsaV3_1G028100	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G028100	Watermelon (97103) v1	cucwmB091
CsaV3_1G028100	Watermelon (97103) v2	cucwmbB063