Cla008891 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008891
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)
Location	Chr10 : 1563299 .. 1567256 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTGTGAAGTTACAAAGCATCCAATTCTTCGCAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGGAGATTTATTAGATGTGGGATCGCAGAGGCATCTGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGACGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGGAGCAAAGGAAGGAGAAAGTAGGATTATGGGATTTCCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAGAATCGGATGCAACAGCAACTTATCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGTGCCCCGGCTCAGGTCAGCCTTTCTTGCAAAATCAAATTATTCCATGTGGTTGTTTTGCTCGTTACGGTTATGCATATATGTTTATTATGTCAATACGAGCATAGCTCAACTAAAATAAAACTTCTACTATCGAACTTAAGGTTAGATATTTGATTACTCCACCCCTATCTAAAGTGAATAAGGTAAAATTTCACGCATTGGAATGCGGGAATCTCAATAAGAGATCCTTTTGAAGTTTATAGAACATTAAGTTCGGAAGTTCAAATTCTGTAAAAGATAAAAATAATAGACCTTTGGTTGCTAATATATGTGTAGGTTAGCAAAAAAAAAAAAAGGAAAAAAAAAACATATCTTAGGAATTATTTGCATCTTTCTCCGATCATCATGTGGACTGAAACAGAAACTGATGCTCGCAGTTCAGGAAATTGTTCCCACCAACAAAATGGAGTTGCGAATTCAATGCCTCACTAACAGTGCCATTCTTTCAATGGTTAGTCGGCCCTTCGGAGGTAATTTCATTTCATTAAATCTTCAAATGCCCTAATCTTTACCAATCCCTTGTGTTCTGTTTCACTTATTATCCTCTGTTTTCTGTTGATTTGAATGATTGCTTGAGTTTTCCAGTTGAACAATCAGTTTACACATGCTTTGAATTGAAACTGAACAACTAATGGTAGTGAGTGATTTGGAATTGTTTATATGCTACATTCTAGGTGGCATTTTGTTAAAAGTATTTGTGAAATTAGATTCACTATATTTCATCAGCTTAAGTTTTTGGGCTTATTGGTGCTTTTAACGCAGTATTAGAGCTTCTTGTGTGTAAGAGCATTCTCCCAATGATCTTTTTTTTCCCCTCTTGGTTTCTTAACAATGGCTGAATCATCTTCCTCATCTCTCATATCTATCCAACATTGATAGTACTAGAACATGAAGTCTTGTGTTCGTTCGAGGGCTATGCGTGAGAGTGTGTTAGAGTATTGGTATAGTTAAATTTACAATAACCCATCACCTTCTGCTTTTGGAATGATTGGTGGCTTAATGTGATAATTAGAGCTTCTTGCTTGAAAGAGCAGTTTCCATTTTTATTTTTATTTTTGTTTCTTTTGTTTCTTACTAATGGCTGAAGTATCTTCCTCAACCATCAAGGCCAACCTTGTTCTCATCAATTCATTCAACTTTGATAATAGTTTAACATAGTATCAAAACAAGAGGTCATGTATTCGAACTCTTGTATTGTCATTTTCTCACCAATTAATATTGATTTCAACTTGTTGGGCCTTCTAAATTTCTAAACCCACAAATGAAGGAGGTTTTGAAGTATTGATATATTTAAATTTACCGTAACCTATCAACTTAAGTTATTTGGTTGGTTGTTGATTTAACGAATAGACATAAATAGCAATGAAGAACAAAAGTAGTAAATTTTGAGAGTGAGTGAAATACATCAAACTCGTTTTTTAAGCAAATAAATGCATAAACTTATTTATTTTGAATATCCTTCTTGTATAAAGAATGATATATTTTTAATAATCCTTCCCTTGTCGTGTCCATGTCCAAGATTTTGAAAAACGATGTGTCACCATGTCCATGTCATTTTGTTCTATCCTGTGTGCATGATTGTGCTTCTTAGGAGGAATGGATAACCAATGATCAATTACTCCTTGCTTGACTATACAACCTTCTCAAACTCAAGGCTGCCACTCAAGTCCCTAATTGCAAGACATTAGAAAAACTACAGAAAAGAATATAGGAGTAATATAAATCTCAGAGATTCAAACAAAAACAACTAAGATGGAACTAATGAGCATGGAAAATGTGCAAGGTATATATTCACAATGCTTATCTAGATCTGCTGCTAGCACCATCTTTCCTATTGTATGTTGATATTTTATGACTAGGGAGCTCATCCAGTTTATACAGATTTGGTTTGTTTCTTTCTTGCCATTGAGGCATGTAAGTTTCTTTATACCTTTCTCAAATGAAGTTCACTTGTGATTCCCTGCTGTGAGCTAAAATGCAGAATGCCAAAACAAGTTCCATTTTAGGGTTTTAGTAACTATTCACCTGTCTTTCACATGCTTCAATGGTAAATTTGTAATGTGAGGGAAGAGACAACCTACGAAACAAAGAAAAATGACTCTAATGCCAAAAGTCAGAGGTAGAAAACTGTAGAATGAAAAGAAAGTCAAAACTTGAAGTTACCTCATATGGAGTTATAATAATGTATTTTTATAAAGAGTATGACCTGAAAATAGGAATAGGATGAGATGAGTTTTTCCTAATCCTGAACAAGTTATGATTAGATCTGATTGGCCATAGACTTATTTGAACCTAGATCCAATTTCAACCACAACATGAACCAAATTATCTTTTCTTGGAAGGTGTTTTGTTTAAGTGACCTTAGCCATATTGTAGTGTTATTGGGGTTGACCATTTGGAGGCTACGATGCAACAACCAGACATTAACTTTTTAGTGATTAAACTTGGTAACTTCCTTTGTGCTGATAGGTTTACTCATCAACTGCAACTCCTTAGGCCTTGTATGGTAACGATTTGTGCAATAGTTTGCATCTTTTTAAGTAAAAGAGTTGAATTCTTAGCCAAATTCCAAGAACAAAAATAAATTTTTAAAAACCACTTTAGGAAAAGTTGAAGTAAACTGTTTGGGACAAGCTAGCATTCATATAGTTGGTTTGAACCTGTGTTTTAATAACTCGTCCTTTTTAAATTCGTTTTCCGTCTAGTGGTGGGTGTCAAGATGAACTCCTTGTCAATTGTAGTCAGAATGTGATTCACTAGAGATCATCATAAGATTTGAACATCATCTCAAATTTTCATGCTACACTCTCTGGTTCCTTGCAAAGGTGAATATAGTGAATTGGCTTAATTTGCTGTAGTGTTATAAGTGCTTAGTTTGTTGTTAAATCCCCTATAAATAGAGGGTTTCCCTATCGGCCCGGACACTCCGAATCATAATAAGATCCTTGAAGAATTCTCTCCTTTTATCACTTAGGCTCTGCCAAAAAGTCATGAGTTGAATCAATTATTATGGTCTATTATGTGAATTTAATAAGTAGTTTTGACCTATAAAACCTTTCCATGTACATGAAAGAATCTTACATTTCCTCCTGTTTAGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAGTGCAGGTATAAACTCCATTTTCATTATGGGTTTCACAGCACTGTAAAAATTATTCTATCTATCTACAATTACATAATCATATATTCATTTTTTCTTTTTTTAATATACTTTTGAATCCCCATTATAGGTACCTAGAAAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAATGAATTTGGGCTCCCTCTCACCATGAATCCTAGTATGTATACTCTGATACTGTGTCTCCAATAAGGACATGTAGATTTTCAGTTAGGTTAAAAATTATTTTTGGTCTCTGGACTTTCATAGGAGTACTTTAATCCTTAAACTTTGTAACTAGTTAGTCTTTGCACTTTCAATTTTTAATTTTTTAGCGATTTAG

mRNA sequence

ATGGTGGTTGTGAAGTTACAAAGCATCCAATTCTTCGCAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGGAGATTTATTAGATGTGGGATCGCAGAGGCATCTGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGACGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGGAGCAAAGGAAGGAGAAAGTAGGATTATGGGATTTCCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAGAATCGGATGCAACAGCAACTTATCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGTGCCCCGGCTCAGAAACTGATGCTCGCAGTTCAGGAAATTGTTCCCACCAACAAAATGGAGTTGCGAATTCAATGCCTCACTAACAGTGCCATTCTTTCAATGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAGTGCAGGTACCTAGAAAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAATGAATTTGGGCTCCCTCTCACCATGAATCCTACGATTTAG

Coding sequence (CDS)

ATGGTGGTTGTGAAGTTACAAAGCATCCAATTCTTCGCAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGGAGATTTATTAGATGTGGGATCGCAGAGGCATCTGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGACGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGGAGCAAAGGAAGGAGAAAGTAGGATTATGGGATTTCCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAGAATCGGATGCAACAGCAACTTATCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGTGCCCCGGCTCAGAAACTGATGCTCGCAGTTCAGGAAATTGTTCCCACCAACAAAATGGAGTTGCGAATTCAATGCCTCACTAACAGTGCCATTCTTTCAATGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAGTGCAGGTACCTAGAAAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAATGAATTTGGGCTCCCTCTCACCATGAATCCTACGATTTAG

Protein sequence

MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMTLFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAILSMVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPTI

Homology

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BLAST of Cla008891 vs. Swiss-Prot
Match: D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-16
Identity = 55/169 (32.54%), Postives = 82/169 (48.52%), Query Frame = 1


Query: 51  DGPFEKVFMTLFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQL 110
           D  F K+ +   ++ ++  A      K          DY+R VD + RV +  +  QQ  
Sbjct: 67  DSFFSKIAINYLSKNLQDAAGISSSSKST--------DYDRLVDTATRVSRNFDTKQQH- 126

Query: 111 IVREVLLSMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAILSMVV------EVEVN 170
              E +LS L    P     L ++   P +K+   +  L  +   + +V      E EVN
Sbjct: 127 ---EFVLSSLDRALPTVISSL-IKMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVN 186

Query: 171 GIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           G K++S V+I+KCR+LE S CVGMC ++CKIP+Q F  N  G+P+ M P
Sbjct: 187 GRKEKSVVYIEKCRFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEP 222

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BLAST of Cla008891 vs. TrEMBL
Match: A0A0A0L682_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002850 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.9e-91
Identity = 176/220 (80.00%), Postives = 185/220 (84.09%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVV+KLQSIQFF APPKEIR+RK + RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFANAKEQRKEKVGL-WDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSM 120
           LFARKMEKFANAKEQRK+K GL WDFLYDYERFVDVSKRVMQGK RMQQQ++VREVLLSM
Sbjct: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120

Query: 121 LPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVH 180
           LPPGAPAQ      +++ P  K       L            S VVEVEVNGIKQRSGVH
Sbjct: 121 LPPGAPAQ-----FRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180

Query: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP
Sbjct: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 215

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BLAST of Cla008891 vs. TrEMBL
Match: A0A061G201_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.3e-66
Identity = 138/221 (62.44%), Postives = 156/221 (70.59%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MV + LQ   F A      R       FIRCGIAE SGEPAPLGQKTKYNDG FEK F+T
Sbjct: 1   MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLGQKTKYNDGLFEKAFIT 60

Query: 61  LFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSML 120
           LFARKMEKFA A +  +E    W F+YDYE FV+VS+RVMQG++R+QQQ +VREVLLSML
Sbjct: 61  LFARKMEKFATAPKAGEEAKKGW-FVYDYESFVEVSQRVMQGRSRLQQQQVVREVLLSML 120

Query: 121 PPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVHI 180
           PPGAPAQ      +++ P  K                    S VVEVEVNG+KQ+SGVHI
Sbjct: 121 PPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVEVEVNGVKQKSGVHI 180

Query: 181 KKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPTI 216
           KKCRYLENSGC GMCVNMCKIPTQDFFTNEFGLPLTM P++
Sbjct: 181 KKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTPSM 215

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BLAST of Cla008891 vs. TrEMBL
Match: V4TRD9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021724mg PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 142/222 (63.96%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   +  RCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEVE+NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

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BLAST of Cla008891 vs. TrEMBL
Match: A0A067GAY0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0237092mg PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 142/222 (63.96%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   +  RCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEVE+NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

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BLAST of Cla008891 vs. TrEMBL
Match: A0A061GA01_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 138/219 (63.01%), Postives = 154/219 (70.32%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MV + LQ   F A      R       FIRCGIAE SGEPAPLGQKTKYNDG FEK F+T
Sbjct: 1   MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLGQKTKYNDGLFEKAFIT 60

Query: 61  LFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSML 120
           LFARKMEKFA A +  +E    W F+YDYE FV+VS+RVMQG++R+QQQ +VREVLLSML
Sbjct: 61  LFARKMEKFATAPKAGEEAKKGW-FVYDYESFVEVSQRVMQGRSRLQQQQVVREVLLSML 120

Query: 121 PPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVHI 180
           PPGAPAQ      +++ P  K                    S VVEVEVNG+KQ+SGVHI
Sbjct: 121 PPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVEVEVNGVKQKSGVHI 180

Query: 181 KKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           KKCRYLENSGC GMCVNMCKIPTQDFFTNEFGLPLTM P
Sbjct: 181 KKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTP 213

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BLAST of Cla008891 vs. NCBI nr
Match: gi|659095394|ref|XP_008448557.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 1.9e-91
Identity = 179/224 (79.91%), Postives = 189/224 (84.38%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRK-KQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+KLQSIQFF APPKEIR+RK  + RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKISKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60

Query: 61  TLFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSM 120
           TLFARKMEKFANAKEQRK+K G WDFLYDYERFVDVSKRVMQGKNRMQQQL+VREVLLSM
Sbjct: 61  TLFARKMEKFANAKEQRKKKEGFWDFLYDYERFVDVSKRVMQGKNRMQQQLVVREVLLSM 120

Query: 121 LPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL----------SMVVEVEVNGIKQR 180
           LPPGAPAQ      +++ P  K      C  N++I           S VVEVEVNGIKQR
Sbjct: 121 LPPGAPAQ-----FRKLFPPTKW----ACEFNASITVPFFQWLVGPSEVVEVEVNGIKQR 180

Query: 181 SGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           SGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP
Sbjct: 181 SGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 215

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|778674788|ref|XP_011650294.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 5.6e-91
Identity = 176/220 (80.00%), Postives = 185/220 (84.09%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVV+KLQSIQFF APPKEIR+RK + RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFANAKEQRKEKVGL-WDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSM 120
           LFARKMEKFANAKEQRK+K GL WDFLYDYERFVDVSKRVMQGK RMQQQ++VREVLLSM
Sbjct: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120

Query: 121 LPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVH 180
           LPPGAPAQ      +++ P  K       L            S VVEVEVNGIKQRSGVH
Sbjct: 121 LPPGAPAQ-----FRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180

Query: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP
Sbjct: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 215

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|590675194|ref|XP_007039379.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 259.6 bits (662), Expect = 4.8e-66
Identity = 138/221 (62.44%), Postives = 156/221 (70.59%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MV + LQ   F A      R       FIRCGIAE SGEPAPLGQKTKYNDG FEK F+T
Sbjct: 1   MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLGQKTKYNDGLFEKAFIT 60

Query: 61  LFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSML 120
           LFARKMEKFA A +  +E    W F+YDYE FV+VS+RVMQG++R+QQQ +VREVLLSML
Sbjct: 61  LFARKMEKFATAPKAGEEAKKGW-FVYDYESFVEVSQRVMQGRSRLQQQQVVREVLLSML 120

Query: 121 PPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVHI 180
           PPGAPAQ      +++ P  K                    S VVEVEVNG+KQ+SGVHI
Sbjct: 121 PPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVEVEVNGVKQKSGVHI 180

Query: 181 KKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPTI 216
           KKCRYLENSGC GMCVNMCKIPTQDFFTNEFGLPLTM P++
Sbjct: 181 KKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTPSM 215

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|568844822|ref|XP_006476281.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X3 [Citrus sinensis])

HSP 1 Score: 259.2 bits (661), Expect = 6.3e-66
Identity = 142/222 (63.96%), Postives = 161/222 (72.52%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   + IRCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKIIRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKHWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEV++NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVDINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|568844824|ref|XP_006476282.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X4 [Citrus sinensis])

HSP 1 Score: 259.2 bits (661), Expect = 6.3e-66
Identity = 142/222 (63.96%), Postives = 161/222 (72.52%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   + IRCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKIIRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKHWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEV++NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVDINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

The following BLAST results are available for this feature:

BLAST of Cla008891 vs. Swiss-Prot


Match Name	E-value	Identity	Description
D27_ARATH	1.6e-16	32.54	Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 S...	[more]

BLAST of Cla008891 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L682_CUCSA	3.9e-91	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002850 PE=4 SV=1	[more]
A0A061G201_THECC	3.3e-66	62.44	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1	[more]
V4TRD9_9ROSI	5.7e-66	63.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021724mg PE=4 SV=1	[more]
A0A067GAY0_CITSI	5.7e-66	63.96	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0237092mg PE=4 ...	[more]
A0A061GA01_THECC	5.7e-66	63.01	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1	[more]

BLAST of Cla008891 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095394\|ref\|XP_008448557.1\|	1.9e-91	79.91	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]	[more]
gi\|778674788\|ref\|XP_011650294.1\|	5.6e-91	80.00	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus]	[more]
gi\|590675194\|ref\|XP_007039379.1\|	4.8e-66	62.44	Uncharacterized protein isoform 2 [Theobroma cacao]	[more]
gi\|568844822\|ref\|XP_006476281.1\|	6.3e-66	63.96	PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X3 [Citrus sinensi...	[more]
gi\|568844824\|ref\|XP_006476282.1\|	6.3e-66	63.96	PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X4 [Citrus sinensi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025114	DUF4033

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0030245	cellulose catabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0000272	polysaccharide catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0044434	chloroplast part
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008810	cellulase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0016853	isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008891	Cla008891.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025114	Domain of unknown function DUF4033	PFAM	PF13225	DUF4033	coord: 160..213 score: 3.0
None	No IPR available	PANTHER	PTHR33591	FAMILY NOT NAMED	coord: 16..213 score: 1.0
None	No IPR available	PANTHER	PTHR33591:SF1	SUBFAMILY NOT NAMED	coord: 16..213 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008891	Cla97C10G185370	Watermelon (97103) v2	wmwmbB056
Cla008891	Csa3G002850	Cucumber (Chinese Long) v2	cuwmB200
Cla008891	MELO3C013771	Melon (DHL92) v3.5.1	mewmB446
Cla008891	ClCG10G000790	Watermelon (Charleston Gray)	wcgwmB056
Cla008891	CSPI03G00800	Wild cucumber (PI 183967)	cpiwmB200
Cla008891	Cucsa.322570	Cucumber (Gy14) v1	cgywmB583
Cla008891	CmaCh06G005820	Cucurbita maxima (Rimu)	cmawmB789
Cla008891	CmoCh06G005860	Cucurbita moschata (Rifu)	cmowmB783
Cla008891	Lsi07G011080	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008891	Cp4.1LG08g09190	Cucurbita pepo (Zucchini)	cpewmB829
Cla008891	CsGy3G000760	Cucumber (Gy14) v2	cgybwmB188
Cla008891	MELO3C013771.2	Melon (DHL92) v3.6.1	medwmB438
Cla008891	Carg16268	Silver-seed gourd	carwmB0678
Cla008891	CsaV3_3G000840	Cucumber (Chinese Long) v3	cucwmB209
Cla008891	BhiUN179G28	Wax gourd	wgowmB575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008891	Silver-seed gourd	carwmB0425
Cla008891	Cucurbita maxima (Rimu)	cmawmB292
Cla008891	Cucurbita moschata (Rifu)	cmowmB285
Cla008891	Cucurbita pepo (Zucchini)	cpewmB202