Cla008891.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008891
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)
Location	Chr10 : 1563299 .. 1567256 (+)
Sequence length	648

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTGTGAAGTTACAAAGCATCCAATTCTTCGCAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGGAGATTTATTAGATGTGGGATCGCAGAGGCATCTGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGACGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGGAGCAAAGGAAGGAGAAAGTAGGATTATGGGATTTCCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAGAATCGGATGCAACAGCAACTTATCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGTGCCCCGGCTCAGGTCAGCCTTTCTTGCAAAATCAAATTATTCCATGTGGTTGTTTTGCTCGTTACGGTTATGCATATATGTTTATTATGTCAATACGAGCATAGCTCAACTAAAATAAAACTTCTACTATCGAACTTAAGGTTAGATATTTGATTACTCCACCCCTATCTAAAGTGAATAAGGTAAAATTTCACGCATTGGAATGCGGGAATCTCAATAAGAGATCCTTTTGAAGTTTATAGAACATTAAGTTCGGAAGTTCAAATTCTGTAAAAGATAAAAATAATAGACCTTTGGTTGCTAATATATGTGTAGGTTAGCAAAAAAAAAAAAAGGAAAAAAAAAACATATCTTAGGAATTATTTGCATCTTTCTCCGATCATCATGTGGACTGAAACAGAAACTGATGCTCGCAGTTCAGGAAATTGTTCCCACCAACAAAATGGAGTTGCGAATTCAATGCCTCACTAACAGTGCCATTCTTTCAATGGTTAGTCGGCCCTTCGGAGGTAATTTCATTTCATTAAATCTTCAAATGCCCTAATCTTTACCAATCCCTTGTGTTCTGTTTCACTTATTATCCTCTGTTTTCTGTTGATTTGAATGATTGCTTGAGTTTTCCAGTTGAACAATCAGTTTACACATGCTTTGAATTGAAACTGAACAACTAATGGTAGTGAGTGATTTGGAATTGTTTATATGCTACATTCTAGGTGGCATTTTGTTAAAAGTATTTGTGAAATTAGATTCACTATATTTCATCAGCTTAAGTTTTTGGGCTTATTGGTGCTTTTAACGCAGTATTAGAGCTTCTTGTGTGTAAGAGCATTCTCCCAATGATCTTTTTTTTCCCCTCTTGGTTTCTTAACAATGGCTGAATCATCTTCCTCATCTCTCATATCTATCCAACATTGATAGTACTAGAACATGAAGTCTTGTGTTCGTTCGAGGGCTATGCGTGAGAGTGTGTTAGAGTATTGGTATAGTTAAATTTACAATAACCCATCACCTTCTGCTTTTGGAATGATTGGTGGCTTAATGTGATAATTAGAGCTTCTTGCTTGAAAGAGCAGTTTCCATTTTTATTTTTATTTTTGTTTCTTTTGTTTCTTACTAATGGCTGAAGTATCTTCCTCAACCATCAAGGCCAACCTTGTTCTCATCAATTCATTCAACTTTGATAATAGTTTAACATAGTATCAAAACAAGAGGTCATGTATTCGAACTCTTGTATTGTCATTTTCTCACCAATTAATATTGATTTCAACTTGTTGGGCCTTCTAAATTTCTAAACCCACAAATGAAGGAGGTTTTGAAGTATTGATATATTTAAATTTACCGTAACCTATCAACTTAAGTTATTTGGTTGGTTGTTGATTTAACGAATAGACATAAATAGCAATGAAGAACAAAAGTAGTAAATTTTGAGAGTGAGTGAAATACATCAAACTCGTTTTTTAAGCAAATAAATGCATAAACTTATTTATTTTGAATATCCTTCTTGTATAAAGAATGATATATTTTTAATAATCCTTCCCTTGTCGTGTCCATGTCCAAGATTTTGAAAAACGATGTGTCACCATGTCCATGTCATTTTGTTCTATCCTGTGTGCATGATTGTGCTTCTTAGGAGGAATGGATAACCAATGATCAATTACTCCTTGCTTGACTATACAACCTTCTCAAACTCAAGGCTGCCACTCAAGTCCCTAATTGCAAGACATTAGAAAAACTACAGAAAAGAATATAGGAGTAATATAAATCTCAGAGATTCAAACAAAAACAACTAAGATGGAACTAATGAGCATGGAAAATGTGCAAGGTATATATTCACAATGCTTATCTAGATCTGCTGCTAGCACCATCTTTCCTATTGTATGTTGATATTTTATGACTAGGGAGCTCATCCAGTTTATACAGATTTGGTTTGTTTCTTTCTTGCCATTGAGGCATGTAAGTTTCTTTATACCTTTCTCAAATGAAGTTCACTTGTGATTCCCTGCTGTGAGCTAAAATGCAGAATGCCAAAACAAGTTCCATTTTAGGGTTTTAGTAACTATTCACCTGTCTTTCACATGCTTCAATGGTAAATTTGTAATGTGAGGGAAGAGACAACCTACGAAACAAAGAAAAATGACTCTAATGCCAAAAGTCAGAGGTAGAAAACTGTAGAATGAAAAGAAAGTCAAAACTTGAAGTTACCTCATATGGAGTTATAATAATGTATTTTTATAAAGAGTATGACCTGAAAATAGGAATAGGATGAGATGAGTTTTTCCTAATCCTGAACAAGTTATGATTAGATCTGATTGGCCATAGACTTATTTGAACCTAGATCCAATTTCAACCACAACATGAACCAAATTATCTTTTCTTGGAAGGTGTTTTGTTTAAGTGACCTTAGCCATATTGTAGTGTTATTGGGGTTGACCATTTGGAGGCTACGATGCAACAACCAGACATTAACTTTTTAGTGATTAAACTTGGTAACTTCCTTTGTGCTGATAGGTTTACTCATCAACTGCAACTCCTTAGGCCTTGTATGGTAACGATTTGTGCAATAGTTTGCATCTTTTTAAGTAAAAGAGTTGAATTCTTAGCCAAATTCCAAGAACAAAAATAAATTTTTAAAAACCACTTTAGGAAAAGTTGAAGTAAACTGTTTGGGACAAGCTAGCATTCATATAGTTGGTTTGAACCTGTGTTTTAATAACTCGTCCTTTTTAAATTCGTTTTCCGTCTAGTGGTGGGTGTCAAGATGAACTCCTTGTCAATTGTAGTCAGAATGTGATTCACTAGAGATCATCATAAGATTTGAACATCATCTCAAATTTTCATGCTACACTCTCTGGTTCCTTGCAAAGGTGAATATAGTGAATTGGCTTAATTTGCTGTAGTGTTATAAGTGCTTAGTTTGTTGTTAAATCCCCTATAAATAGAGGGTTTCCCTATCGGCCCGGACACTCCGAATCATAATAAGATCCTTGAAGAATTCTCTCCTTTTATCACTTAGGCTCTGCCAAAAAGTCATGAGTTGAATCAATTATTATGGTCTATTATGTGAATTTAATAAGTAGTTTTGACCTATAAAACCTTTCCATGTACATGAAAGAATCTTACATTTCCTCCTGTTTAGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAGTGCAGGTATAAACTCCATTTTCATTATGGGTTTCACAGCACTGTAAAAATTATTCTATCTATCTACAATTACATAATCATATATTCATTTTTTCTTTTTTTAATATACTTTTGAATCCCCATTATAGGTACCTAGAAAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAATGAATTTGGGCTCCCTCTCACCATGAATCCTAGTATGTATACTCTGATACTGTGTCTCCAATAAGGACATGTAGATTTTCAGTTAGGTTAAAAATTATTTTTGGTCTCTGGACTTTCATAGGAGTACTTTAATCCTTAAACTTTGTAACTAGTTAGTCTTTGCACTTTCAATTTTTAATTTTTTAGCGATTTAG

mRNA sequence

ATGGTGGTTGTGAAGTTACAAAGCATCCAATTCTTCGCAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGGAGATTTATTAGATGTGGGATCGCAGAGGCATCTGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGACGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGGAGCAAAGGAAGGAGAAAGTAGGATTATGGGATTTCCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAGAATCGGATGCAACAGCAACTTATCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGTGCCCCGGCTCAGAAACTGATGCTCGCAGTTCAGGAAATTGTTCCCACCAACAAAATGGAGTTGCGAATTCAATGCCTCACTAACAGTGCCATTCTTTCAATGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAGTGCAGGTACCTAGAAAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAATGAATTTGGGCTCCCTCTCACCATGAATCCTACGATTTAG

Coding sequence (CDS)

ATGGTGGTTGTGAAGTTACAAAGCATCCAATTCTTCGCAGCTCCTCCAAAGGAGATTAGGAGTAGAAAGAAACAGAGGAGATTTATTAGATGTGGGATCGCAGAGGCATCTGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGACGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAGGAGCAAAGGAAGGAGAAAGTAGGATTATGGGATTTCCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAGAATCGGATGCAACAGCAACTTATCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGTGCCCCGGCTCAGAAACTGATGCTCGCAGTTCAGGAAATTGTTCCCACCAACAAAATGGAGTTGCGAATTCAATGCCTCACTAACAGTGCCATTCTTTCAATGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAGTGCAGGTACCTAGAAAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAATGAATTTGGGCTCCCTCTCACCATGAATCCTACGATTTAG

Protein sequence

MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMTLFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAILSMVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPTI

Homology

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BLAST of Cla008891 vs. Swiss-Prot
Match: D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-16
Identity = 55/169 (32.54%), Postives = 82/169 (48.52%), Query Frame = 1


Query: 51  DGPFEKVFMTLFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQL 110
           D  F K+ +   ++ ++  A      K          DY+R VD + RV +  +  QQ  
Sbjct: 67  DSFFSKIAINYLSKNLQDAAGISSSSKST--------DYDRLVDTATRVSRNFDTKQQH- 126

Query: 111 IVREVLLSMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAILSMVV------EVEVN 170
              E +LS L    P     L ++   P +K+   +  L  +   + +V      E EVN
Sbjct: 127 ---EFVLSSLDRALPTVISSL-IKMAFPPSKVSRELFALFTTISFAWLVGPSEVRETEVN 186

Query: 171 GIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           G K++S V+I+KCR+LE S CVGMC ++CKIP+Q F  N  G+P+ M P
Sbjct: 187 GRKEKSVVYIEKCRFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEP 222

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BLAST of Cla008891 vs. TrEMBL
Match: A0A0A0L682_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002850 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.9e-91
Identity = 176/220 (80.00%), Postives = 185/220 (84.09%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVV+KLQSIQFF APPKEIR+RK + RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFANAKEQRKEKVGL-WDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSM 120
           LFARKMEKFANAKEQRK+K GL WDFLYDYERFVDVSKRVMQGK RMQQQ++VREVLLSM
Sbjct: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120

Query: 121 LPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVH 180
           LPPGAPAQ      +++ P  K       L            S VVEVEVNGIKQRSGVH
Sbjct: 121 LPPGAPAQ-----FRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180

Query: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP
Sbjct: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 215

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BLAST of Cla008891 vs. TrEMBL
Match: A0A061G201_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.3e-66
Identity = 138/221 (62.44%), Postives = 156/221 (70.59%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MV + LQ   F A      R       FIRCGIAE SGEPAPLGQKTKYNDG FEK F+T
Sbjct: 1   MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLGQKTKYNDGLFEKAFIT 60

Query: 61  LFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSML 120
           LFARKMEKFA A +  +E    W F+YDYE FV+VS+RVMQG++R+QQQ +VREVLLSML
Sbjct: 61  LFARKMEKFATAPKAGEEAKKGW-FVYDYESFVEVSQRVMQGRSRLQQQQVVREVLLSML 120

Query: 121 PPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVHI 180
           PPGAPAQ      +++ P  K                    S VVEVEVNG+KQ+SGVHI
Sbjct: 121 PPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVEVEVNGVKQKSGVHI 180

Query: 181 KKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPTI 216
           KKCRYLENSGC GMCVNMCKIPTQDFFTNEFGLPLTM P++
Sbjct: 181 KKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTPSM 215

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BLAST of Cla008891 vs. TrEMBL
Match: V4TRD9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021724mg PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 142/222 (63.96%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   +  RCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEVE+NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

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BLAST of Cla008891 vs. TrEMBL
Match: A0A067GAY0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0237092mg PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 142/222 (63.96%), Postives = 160/222 (72.07%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   +  RCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEVE+NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

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BLAST of Cla008891 vs. TrEMBL
Match: A0A061GA01_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 138/219 (63.01%), Postives = 154/219 (70.32%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MV + LQ   F A      R       FIRCGIAE SGEPAPLGQKTKYNDG FEK F+T
Sbjct: 1   MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLGQKTKYNDGLFEKAFIT 60

Query: 61  LFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSML 120
           LFARKMEKFA A +  +E    W F+YDYE FV+VS+RVMQG++R+QQQ +VREVLLSML
Sbjct: 61  LFARKMEKFATAPKAGEEAKKGW-FVYDYESFVEVSQRVMQGRSRLQQQQVVREVLLSML 120

Query: 121 PPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVHI 180
           PPGAPAQ      +++ P  K                    S VVEVEVNG+KQ+SGVHI
Sbjct: 121 PPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVEVEVNGVKQKSGVHI 180

Query: 181 KKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           KKCRYLENSGC GMCVNMCKIPTQDFFTNEFGLPLTM P
Sbjct: 181 KKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTP 213

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BLAST of Cla008891 vs. NCBI nr
Match: gi|659095394|ref|XP_008448557.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 1.9e-91
Identity = 179/224 (79.91%), Postives = 189/224 (84.38%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRK-KQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+KLQSIQFF APPKEIR+RK  + RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKISKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60

Query: 61  TLFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSM 120
           TLFARKMEKFANAKEQRK+K G WDFLYDYERFVDVSKRVMQGKNRMQQQL+VREVLLSM
Sbjct: 61  TLFARKMEKFANAKEQRKKKEGFWDFLYDYERFVDVSKRVMQGKNRMQQQLVVREVLLSM 120

Query: 121 LPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL----------SMVVEVEVNGIKQR 180
           LPPGAPAQ      +++ P  K      C  N++I           S VVEVEVNGIKQR
Sbjct: 121 LPPGAPAQ-----FRKLFPPTKW----ACEFNASITVPFFQWLVGPSEVVEVEVNGIKQR 180

Query: 181 SGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           SGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP
Sbjct: 181 SGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 215

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|778674788|ref|XP_011650294.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 5.6e-91
Identity = 176/220 (80.00%), Postives = 185/220 (84.09%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVV+KLQSIQFF APPKEIR+RK + RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFANAKEQRKEKVGL-WDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSM 120
           LFARKMEKFANAKEQRK+K GL WDFLYDYERFVDVSKRVMQGK RMQQQ++VREVLLSM
Sbjct: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120

Query: 121 LPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVH 180
           LPPGAPAQ      +++ P  K       L            S VVEVEVNGIKQRSGVH
Sbjct: 121 LPPGAPAQ-----FRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180

Query: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP
Sbjct: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 215

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|590675194|ref|XP_007039379.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 259.6 bits (662), Expect = 4.8e-66
Identity = 138/221 (62.44%), Postives = 156/221 (70.59%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQRRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MV + LQ   F A      R       FIRCGIAE SGEPAPLGQKTKYNDG FEK F+T
Sbjct: 1   MVALGLQVAHFTAPQQFSNRRHGNFSNFIRCGIAEPSGEPAPLGQKTKYNDGLFEKAFIT 60

Query: 61  LFARKMEKFANAKEQRKEKVGLWDFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLLSML 120
           LFARKMEKFA A +  +E    W F+YDYE FV+VS+RVMQG++R+QQQ +VREVLLSML
Sbjct: 61  LFARKMEKFATAPKAGEEAKKGW-FVYDYESFVEVSQRVMQGRSRLQQQQVVREVLLSML 120

Query: 121 PPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSGVHI 180
           PPGAPAQ      +++ P  K                    S VVEVEVNG+KQ+SGVHI
Sbjct: 121 PPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFNWLVGPSEVVEVEVNGVKQKSGVHI 180

Query: 181 KKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPTI 216
           KKCRYLENSGC GMCVNMCKIPTQDFFTNEFGLPLTM P++
Sbjct: 181 KKCRYLENSGCAGMCVNMCKIPTQDFFTNEFGLPLTMTPSM 215

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|568844822|ref|XP_006476281.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X3 [Citrus sinensis])

HSP 1 Score: 259.2 bits (661), Expect = 6.3e-66
Identity = 142/222 (63.96%), Postives = 161/222 (72.52%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   + IRCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKIIRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKHWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEV++NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVDINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

[Close]

BLAST of Cla008891 vs. NCBI nr
Match: gi|568844824|ref|XP_006476282.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X4 [Citrus sinensis])

HSP 1 Score: 259.2 bits (661), Expect = 6.3e-66
Identity = 142/222 (63.96%), Postives = 161/222 (72.52%), Query Frame = 1


Query: 1   MVVVKLQSIQFFAAPPKEIRSRKKQR-RFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVV+ LQ ++F   PP +I  R++   + IRCGIAE SGEPAPLGQKTKYNDG FEK FM
Sbjct: 1   MVVLSLQVVRF-PTPPYQISLRRQSTDKIIRCGIAEPSGEPAPLGQKTKYNDGFFEKAFM 60

Query: 61  TLFARKMEKFAN-AKEQRKEKVGLW-DFLYDYERFVDVSKRVMQGKNRMQQQLIVREVLL 120
           TLFARKMEKFA+ AK + + K   W DF YDYE FVDVSKRVM+G++R QQQ +VREVLL
Sbjct: 61  TLFARKMEKFASPAKSKTETKKKHWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLL 120

Query: 121 SMLPPGAPAQKLMLAVQEIVPTNKMELRIQCLTNSAIL------SMVVEVEVNGIKQRSG 180
           SMLPPGAPAQ      +++ P  K                    S VVEV++NG KQRSG
Sbjct: 121 SMLPPGAPAQ-----FRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVDINGEKQRSG 180

Query: 181 VHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP 214
           VHIKKCRYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM P
Sbjct: 181 VHIKKCRYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIP 216

The following BLAST results are available for this feature:

BLAST of Cla008891 vs. Swiss-Prot


Match Name	E-value	Identity	Description
D27_ARATH	1.6e-16	32.54	Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 S...	[more]

BLAST of Cla008891 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L682_CUCSA	3.9e-91	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002850 PE=4 SV=1	[more]
A0A061G201_THECC	3.3e-66	62.44	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1	[more]
V4TRD9_9ROSI	5.7e-66	63.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021724mg PE=4 SV=1	[more]
A0A067GAY0_CITSI	5.7e-66	63.96	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0237092mg PE=4 ...	[more]
A0A061GA01_THECC	5.7e-66	63.01	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1	[more]

BLAST of Cla008891 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095394\|ref\|XP_008448557.1\|	1.9e-91	79.91	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]	[more]
gi\|778674788\|ref\|XP_011650294.1\|	5.6e-91	80.00	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus]	[more]
gi\|590675194\|ref\|XP_007039379.1\|	4.8e-66	62.44	Uncharacterized protein isoform 2 [Theobroma cacao]	[more]
gi\|568844822\|ref\|XP_006476281.1\|	6.3e-66	63.96	PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X3 [Citrus sinensi...	[more]
gi\|568844824\|ref\|XP_006476282.1\|	6.3e-66	63.96	PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X4 [Citrus sinensi...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025114	DUF4033

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla008891	Cla008891	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla008891	Cla008891.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla008891.1.cds1	Cla008891.1.cds1	CDS
Cla008891.1.cds2	Cla008891.1.cds2	CDS
Cla008891.1.cds3	Cla008891.1.cds3	CDS
Cla008891.1.cds4	Cla008891.1.cds4	CDS
Cla008891.1.cds5	Cla008891.1.cds5	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025114	Domain of unknown function DUF4033	PFAM	PF13225	DUF4033	coord: 160..213 score: 3.0
None	No IPR available	PANTHER	PTHR33591	FAMILY NOT NAMED	coord: 16..213 score: 1.0
None	No IPR available	PANTHER	PTHR33591:SF1	SUBFAMILY NOT NAMED	coord: 16..213 score: 1.0