CsaV3_3G000840 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G000840
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	beta-carotene isomerase D27, chloroplastic
Location	chr3 : 650776 .. 654674 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTAGACCATTTTTTTCTATATAAAAACTAACTTTAGTAGAATTTCAAATCTTTTTTGTCCCACAAGCATGTGAGTGTTGATTTTGAAGTGTTTATACTCACCACATATTGCTCCTATCCATTTCTTCACACACCACAACCACACATCTCTACTTCTAACCTCATCCTCATGTCAAAAGCCATCAAGTCATAGAAGAAGAAAGAAACTCTATGAATCAAAATCACAAAACATTACTTACCCATTATTACGTATACTCTTTTAAGATAACGAGTTGTGTGATTTGATTATATGGTTTTCACGATGATATGATATTATTCATTTAAAAAATCTCAAAATGCGTGTTTTCATTTTCCATTTCACACATACCTATCGTACTTCTCTTGTATTGCCCTCTTTTTAAAGTTTTGTTTCCTTGATGTTGTCTCGTCTTTCTTGAACATATAAAGTTAGATCGTAAGATATTGGTCTAAGACGTAAAACTTTCCTTATGGTTCTAAGCTAGCCAAACATTTAAGATTGTGAATGGTAAAAAAATGTAAGGCTATTTCAGCCACCCAAAACTTTGAATTATTCTAAGCATCATAAGATATGATATTGGATAAAGTGAAATAATAGGAAGGAAGAAGAAACATATACTAACCATACCGAAGAGATTTTGTTGGAAGGAAAGAAAGAAAGTAGTTTTTTTGTTTTCCTAAAGGAAGTGCTTTTGATGGTGGTTTTGAAGCTACAAAGCATCCAATTCTTCACAGCTCCTCCAAAGGAGATTAGGAATAGAAAGATAAAGAGCAGATTTATTAGATGTGGGATAGCAGAGGCATCAGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGATGGACCGTTCGAGAAGGTTTTTATGACACTGTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAAGAGCAAAGGAAGAAGAAAGAAGGGTTATGGTGGGATTTTCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAAACCCGAATGCAACAGCAGATCGTCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCCCCGGCTCAGGTCATACCTTTTCTCTTATCTTTTCTCTTTTAGCTTCATTCGAACAAATTATTCAATGGGGTTGTTTTCACGTAACAGAATATATGAAGTTAAACTGTTGAACATCATACTGTGCTGTGGTTCATTGGAAAAATAATTTGAATTTCCATTTTGAAGAATGGTTGTGTAGGTGCATTTAAATGAATTCTACATAAAACTTTTACCATTTTCAATACCCGACGGTAAATAAGGTCAAATCGCATTGAAAAGTCTGGAAAGGTTCAAATTTCACGACCCTTATGGATATAAAGAATTGAATCATAGACTTCTTGATCGATAATATATTTATAGTGCAGCTGAGTTATGCTTGTCTTTTAGCTCGTTTTGACCCATAACCCTTCTTTTATTTGCAATCAAAGGACATAGAAAAACCATATTTAGGGATTATATTTTCATCTTCTTCAATATATCATTGTGGACTAAATCAGAAGCTGATGCTGGCAGTTCAGGAAATTGTTCCCACCAACGAAATGGGCTTGTGAATTCAATGCTTTAATAACAGTTCCATTCTTTCAGTGGTTAGTCGGCCCTTCCGAGGTATTTTCATTTCATTAAATCTTCAAAATGCCCTCATCTTTATGAATCTCTTTGTATATTTTGTTTCACTTAGTACTCTCTGTTTTCTGTAGAATCGGTTTTGCACATACATGCTTTGAATAGCTATTGAACAAGTAATGTTAGTGAATGATTTGAAATTGCTTGCGTTCTATATCGTAGATGGCTTTTGTTTAGACCAAGGGTATAGGTATAATTAAATTTACGGTTCTTCGTCGACTTAAGGTTTTCAAACTTAGTCTCGTTTAGTAACTGTTTCATCTTTTGTTTTTAGTTTGAGTAGATTAAGCTCGTTTTCTCTCCATTCTTACGATGATTTGCATTCTTTCTTTTAAGTACAAAGGCTCTAGCAAAAACAAAAACAACATTTCAACAAGCTACCTTTTTTAGTTTTCAAATTTTAGTTTAGCTTCTAAATCATTGGTAAAATGTAGAAAACAAAGGAAGAACGTTAATGGTTACCAAAACGGAGTCTTATTTATTTAAATTTTAAATACCTTTCAATATAAACTCTTTGTCGTGGTTAGTTTCTTTCTGCCATTGATGCTATGTTATGTTAAGTTTGTTTATATCTTTCTCAAACGAAGTTTACTTGTGATCCCCTGCTGTGAGCTAAAATGCAGAATCCCAAAACAAGTTCCATTTTAGGATTTTAATTAGGAACGCAGTTTACCAAGCCTTCAACATAAGCTTGTAATTTGGGAGAAGAGGTAACATACATGCAAAACAAAGAAAACTGTCTCTAATGCCAAAGTTGGAGAGGTAGAAAACTTCAGAATTTAAATGAAGCTTGAACTTAAAGTTACCTCATATACTTATAAAGAGAATCGCCTAGTCTTAAATTAGTTAGGATTAGATCTAATTAGCCCTAGGCTTATTCAAGCCTAGCTAGGTCCAATTTCACCTACAATAACCATCAAATGATCTTTTGTTGGAGGGTGATCTGATTACTATTAGAGGCTGTGACAGCAGAAACCATGCATTGGCATTTTACTGAGTAATTTTGACATATAAACTTTCAATATGAATGAAAGAAACCTTTCCTCCTGTTTTAGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAATGCAGGTATAAAATCCATTTTCATTATGGCAGGTTTCACACAGCGATGTGCAAATTCTTCTATCAATCTACAATTACATAAGCACATATATATATATATATATATATATATATATATATTTGATTGTCTTTTTCTTTGCAATGTATTCCCATCTTAGGTACCTAGAGAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCTACACAAGATTTCTTCACCAATGAATTTGGACTCCCTCTCACCATGAATCCTAGTATGTATTCTGTGAATCTTTCTTTTCAATATCGTAATATGTTTTACAAGGATATCTAGATTTCTGGTTAGGTCAAAAGCCACTTTTGATCTTGAACGTACGTACTTTTATAGAAGTAACAATTTAATTCCTATACATTTGCTTTAGCTTTAGCATGTAACAATTTGATTTAAATATTTAAATAGTTGTAACATTAAAGTACAATGACTTAATCGGATCAAAAGTATTTTTTTTAACTTTATTAGCTATGTTTGGAGCGAAGATATTAGATTTAAATTGTTCTCGTCGTTAGATTTTGAAGACATGAGCTGTGAGATGATATATGGGCAAGTTCCACCACCATTTGAAGAGGATCCAGTTTCCAAACAACCTTGCTACAAAGATATATGTAAGAGGAATTTGTTTTGCTTTGCATTATTCCAATGATCAACCATATTTGATATAGAAAAAAAAAAATTAAGAAGTGCCCTTGGTTTTGATCAACTTATTAATGTGTCTTCTTGTGTGGTTGGCAGGTTCTATGGCAATTACTAGTGCTCCCTTATGTCCTAAATTGCTAGCTTAAATACATTGGGGTACTTCTAGTAATACACTCATACAGTCATACGTTGTTGGATCCATACTAGAGCGTATAGATTATCTTGCTAGTCGGGAGGCAATAACGTTGTTATTTCTTTGCAAACGATATTGTGTTTGCTAGATAATATACAATCAAGAAGATAATCTTCTTAACATGTTTATAAGAATATAGGGAAATTTTTCATGGTGTATATTATTTTTATTTTGATGAGAGTTTGATCATATACCATCAATTAATTAGTCTTATGGTTA

mRNA sequence

ATGGTGGTTTTGAAGCTACAAAGCATCCAATTCTTCACAGCTCCTCCAAAGGAGATTAGGAATAGAAAGATAAAGAGCAGATTTATTAGATGTGGGATAGCAGAGGCATCAGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGATGGACCGTTCGAGAAGGTTTTTATGACACTGTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAAGAGCAAAGGAAGAAGAAAGAAGGGTTATGGTGGGATTTTCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAAACCCGAATGCAACAGCAGATCGTCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCCCCGGCTCAGTTCAGGAAATTGTTCCCACCAACGAAATGGGCTTGTGAATTCAATGCTTTAATAACAGTTCCATTCTTTCAGTGGTTAGTCGGCCCTTCCGAGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAATGCAGGTACCTAGAGAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCTACACAAGATTTCTTCACCAATGAATTTGGACTCCCTCTCACCATGAATCCTAATTTTGAAGACATGAGCTGTGAGATGATATATGGGCAAGTTCCACCACCATTTGAAGAGGATCCAGTTTCCAAACAACCTTGCTACAAAGATATATGTTCTATGGCAATTACTAGTGCTCCCTTATGTCCTAAATTGCTAGCTTAA

Coding sequence (CDS)

ATGGTGGTTTTGAAGCTACAAAGCATCCAATTCTTCACAGCTCCTCCAAAGGAGATTAGGAATAGAAAGATAAAGAGCAGATTTATTAGATGTGGGATAGCAGAGGCATCAGGTGAGCCAGCTCCATTGGGGCAGAAAACAAAGTACAATGATGGACCGTTCGAGAAGGTTTTTATGACACTGTTTGCAAGGAAAATGGAGAAATTTGCAAATGCTAAAGAGCAAAGGAAGAAGAAAGAAGGGTTATGGTGGGATTTTCTTTATGATTATGAAAGGTTTGTTGATGTTTCAAAGAGAGTAATGCAAGGGAAAACCCGAATGCAACAGCAGATCGTCGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCCCCGGCTCAGTTCAGGAAATTGTTCCCACCAACGAAATGGGCTTGTGAATTCAATGCTTTAATAACAGTTCCATTCTTTCAGTGGTTAGTCGGCCCTTCCGAGGTTGTGGAAGTGGAGGTAAATGGTATAAAGCAAAGAAGTGGAGTTCATATAAAGAAATGCAGGTACCTAGAGAACAGTGGATGTGTAGGTATGTGTGTGAATATGTGCAAGATACCTACACAAGATTTCTTCACCAATGAATTTGGACTCCCTCTCACCATGAATCCTAATTTTGAAGACATGAGCTGTGAGATGATATATGGGCAAGTTCCACCACCATTTGAAGAGGATCCAGTTTCCAAACAACCTTGCTACAAAGATATATGTTCTATGGCAATTACTAGTGCTCCCTTATGTCCTAAATTGCTAGCTTAA

Protein sequence

MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMTLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSMLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMAITSAPLCPKLLA

Homology

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BLAST of CsaV3_3G000840 vs. NCBI nr
Match: XP_011650294.1 (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus] >KGN55666.1 hypothetical protein Csa_3G002850 [Cucumis sativus])

HSP 1 Score: 550.1 bits (1416), Expect = 4.2e-153
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120
           LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM
Sbjct: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120

Query: 121 LPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCR 180
           LPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCR
Sbjct: 121 LPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCR 180

Query: 181 YLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSK 240
           YLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSK
Sbjct: 181 YLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSK 240

Query: 241 QPCYKDICSMAITSAPLCPKLLA 264
           QPCYKDICSMAITSAPLCPKLLA
Sbjct: 241 QPCYKDICSMAITSAPLCPKLLA 263

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BLAST of CsaV3_3G000840 vs. NCBI nr
Match: XP_008448557.1 (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 526.6 bits (1355), Expect = 5.0e-146
Identity = 256/264 (96.97%), Postives = 259/264 (98.11%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKI-KSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVVLKLQSIQFFTAPPKEIRNRKI KSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKISKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60

Query: 61  TLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLS 120
           TLFARKMEKFANAKEQRKKKEG +WDFLYDYERFVDVSKRVMQGK RMQQQ+VVREVLLS
Sbjct: 61  TLFARKMEKFANAKEQRKKKEG-FWDFLYDYERFVDVSKRVMQGKNRMQQQLVVREVLLS 120

Query: 121 MLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 180
           MLPPGAPAQFRKLFPPTKWACEFNA ITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC
Sbjct: 121 MLPPGAPAQFRKLFPPTKWACEFNASITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 180

Query: 181 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 240
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 181 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 240

Query: 241 KQPCYKDICSMAITSAPLCPKLLA 264
           KQPCYKDICSM+ TSAPLCPKLLA
Sbjct: 241 KQPCYKDICSMSNTSAPLCPKLLA 263

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BLAST of CsaV3_3G000840 vs. NCBI nr
Match: XP_023540699.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 484.2 bits (1245), Expect = 2.9e-133
Identity = 239/268 (89.18%), Postives = 246/268 (91.79%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKIK-----SRFIRCGIAEASGEPAPLGQKTKYNDGPFE 60
           MVVLKLQS QFFTA P EIR+RK       SR IRCGIAEASGEPAPLGQKTKYNDGPFE
Sbjct: 1   MVVLKLQSAQFFTA-PCEIRSRKRGNGQKFSRIIRCGIAEASGEPAPLGQKTKYNDGPFE 60

Query: 61  KVFMTLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVRE 120
           KVFMTLFA+KMEK+AN+KEQ KK    WWDFLYDYERFVD SKRVMQGK RMQQQ+VVRE
Sbjct: 61  KVFMTLFAKKMEKYANSKEQTKKIG--WWDFLYDYERFVDASKRVMQGKNRMQQQLVVRE 120

Query: 121 VLLSMLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180
           VLLSMLPPGAPAQFRKLFPPTKWACEFNA ITVPFFQWLVGPSEVVEVEVNGIKQRSGVH
Sbjct: 121 VLLSMLPPGAPAQFRKLFPPTKWACEFNASITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180

Query: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEE 240
           IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEE
Sbjct: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEE 240

Query: 241 DPVSKQPCYKDICSMAITSAPLCPKLLA 264
           DPVSKQPCYKDICSM+  S+ LCPKLLA
Sbjct: 241 DPVSKQPCYKDICSMSNPSSSLCPKLLA 265

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BLAST of CsaV3_3G000840 vs. NCBI nr
Match: XP_022942554.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata])

HSP 1 Score: 481.9 bits (1239), Expect = 1.4e-132
Identity = 237/268 (88.43%), Postives = 246/268 (91.79%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKIK-----SRFIRCGIAEASGEPAPLGQKTKYNDGPFE 60
           MVVLKLQS QFFTA P EIR+RK       SR IRCGIAEASGEPAPLGQKTKYNDGPFE
Sbjct: 1   MVVLKLQSAQFFTA-PCEIRSRKRGNGQKFSRIIRCGIAEASGEPAPLGQKTKYNDGPFE 60

Query: 61  KVFMTLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVRE 120
           KVFMTLFA+KME++AN+KEQ KK    WWDFLYDYERFVD SKRVMQGK RMQQQ+VVRE
Sbjct: 61  KVFMTLFAKKMERYANSKEQMKKIG--WWDFLYDYERFVDASKRVMQGKNRMQQQLVVRE 120

Query: 121 VLLSMLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180
           VLLSMLPPGAPAQFRKLFPPTKWACEFNA ITVPFFQWLVGPSEVVEVEVNG+KQRSGVH
Sbjct: 121 VLLSMLPPGAPAQFRKLFPPTKWACEFNASITVPFFQWLVGPSEVVEVEVNGMKQRSGVH 180

Query: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEE 240
           IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEE
Sbjct: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEE 240

Query: 241 DPVSKQPCYKDICSMAITSAPLCPKLLA 264
           DPVSKQPCYKDICSM+  S+ LCPKLLA
Sbjct: 241 DPVSKQPCYKDICSMSNPSSSLCPKLLA 265

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BLAST of CsaV3_3G000840 vs. NCBI nr
Match: XP_023005623.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima])

HSP 1 Score: 479.2 bits (1232), Expect = 9.2e-132
Identity = 237/268 (88.43%), Postives = 245/268 (91.42%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKIK-----SRFIRCGIAEASGEPAPLGQKTKYNDGPFE 60
           MVVLKLQS QFFTA P EIR+RK       SR IRCGIAEASGEPAPLGQKTKYNDGPFE
Sbjct: 1   MVVLKLQSAQFFTA-PCEIRSRKRGNGQKFSRIIRCGIAEASGEPAPLGQKTKYNDGPFE 60

Query: 61  KVFMTLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVRE 120
           KVFMTLFA+KME++AN+KEQ KK    WWDFLYDYERFVD SKRVMQGK RMQQQ+VVRE
Sbjct: 61  KVFMTLFAKKMERYANSKEQTKKIG--WWDFLYDYERFVDASKRVMQGKNRMQQQLVVRE 120

Query: 121 VLLSMLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180
           VLLSMLPPGAPAQFRKLFPPTKWACEFNA ITVPFFQWLVGPSEVVEVEVNGIKQRSGVH
Sbjct: 121 VLLSMLPPGAPAQFRKLFPPTKWACEFNASITVPFFQWLVGPSEVVEVEVNGIKQRSGVH 180

Query: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEE 240
           IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPP FEE
Sbjct: 181 IKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPLFEE 240

Query: 241 DPVSKQPCYKDICSMAITSAPLCPKLLA 264
           DPVSKQPCYKDICSM+  S+ LCPKLLA
Sbjct: 241 DPVSKQPCYKDICSMSNPSSSLCPKLLA 265

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BLAST of CsaV3_3G000840 vs. TAIR10
Match: AT1G64680.1 (unknown protein)

HSP 1 Score: 387.1 bits (993), Expect = 8.6e-108
Identity = 182/243 (74.90%), Postives = 205/243 (84.36%), Query Frame = 0


Query: 21  NRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMTLFARKMEKFANAKEQRKKKE 80
           N   + R  RCGIAE SGEPAP+G KT+Y DG  E+VFM LFARKM+KF + K++  K++
Sbjct: 11  NLTFRRRSTRCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGSKKKKDTKEK 70

Query: 81  GLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSMLPPGAPAQFRKLFPPTKWAC 140
           G W    YDYE FV+VSKRVMQG++R+QQQ  VREVLLSMLPPGAP QFRKLFPPTKWA 
Sbjct: 71  GFW---EYDYESFVEVSKRVMQGRSRVQQQEAVREVLLSMLPPGAPEQFRKLFPPTKWAA 130

Query: 141 EFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQ 200
           EFNA +TVPFF WLVGPS+V+EVEVNG+KQRSGV IKKCRYLENSGCVGMCVNMCKIPTQ
Sbjct: 131 EFNAALTVPFFHWLVGPSQVIEVEVNGVKQRSGVRIKKCRYLENSGCVGMCVNMCKIPTQ 190

Query: 201 DFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMAITSAPLCPK 260
           DFFTNEFGLPLTMNPN+EDMSCEMIYGQ PP FEED  +KQPC  DICSM+  S+P+CPK
Sbjct: 191 DFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPCLADICSMSNPSSPICPK 250

Query: 261 LLA 264
           L A
Sbjct: 251 LEA 250

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BLAST of CsaV3_3G000840 vs. TAIR10
Match: AT1G03055.1 (unknown protein)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 87/224 (38.84%), Postives = 124/224 (55.36%), Query Frame = 0


Query: 26  SRFIRCGIAEASGEPAPLGQKTKYN----DGPFEKVFMTLFARKMEKFANAKEQRKKKEG 85
           S+ +  G  +A+ E A +      N    D  F K+ +   ++ ++  A      K    
Sbjct: 38  SKPVYSGKLKAAKETARIETSNTKNASIEDSFFSKIAINYLSKNLQDAAGISSSSKST-- 97

Query: 86  LWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSMLPPGAPAQFRKLFPPTKWACE 145
                  DY+R VD + RV +     QQ   V   L   LP    +  +  FPP+K + E
Sbjct: 98  -------DYDRLVDTATRVSRNFDTKQQHEFVLSSLDRALPTVISSLIKMAFPPSKVSRE 157

Query: 146 FNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQD 205
             AL T   F WLVGPSEV E EVNG K++S V+I+KCR+LE S CVGMC ++CKIP+Q 
Sbjct: 158 LFALFTTISFAWLVGPSEVRETEVNGRKEKSVVYIEKCRFLEQSNCVGMCTHICKIPSQI 217

Query: 206 FFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYK 246
           F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  KQPC++
Sbjct: 218 FIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFE 252

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BLAST of CsaV3_3G000840 vs. TAIR10
Match: AT4G01995.1 (unknown protein)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-33
Identity = 87/254 (34.25%), Postives = 131/254 (51.57%), Query Frame = 0


Query: 9   IQFFTAPPKEI------RNRKIKSRFIRCGIAEASGEPAPLG-QKTKYNDGPFEKVFMTL 68
           IQ    PP  I        + I +R +RC I+ +S   +  G  K +Y  GP +  FM  
Sbjct: 5   IQVLLPPPTTIVFSNSFSTKLILTRRLRCRISNSSEVKSDEGAPKLEYKPGPLDDFFMQS 64

Query: 69  FARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSML 128
           F  K+ +   +  ++    GL             V   +++G+TR +       +L S+ 
Sbjct: 65  FRNKLVEEVGSDSEKPGYVGL----------IELVKLLLLKGRTRSETSDAAVRILKSLF 124

Query: 129 PPGAPAQFRKLFPPT---KWACEFNALITVPFFQWLVGPSEVVEVEV-NGIKQRSGVHIK 188
           PP     ++ L  P    K A    A +TV   QWL+GPS+V  +++ NG    SGV ++
Sbjct: 125 PPLILELYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNGESWDSGVFVE 184

Query: 189 KCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDP 248
           KC+YLE S CVG+C+N CK+PTQ FF +  G+PL M PNF+D SC+  +G  PP  E+D 
Sbjct: 185 KCQYLEESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAPP--EDDG 244

Query: 249 VSKQPCYKDICSMA 252
              +PC+ + CS+A
Sbjct: 245 NVNEPCF-ETCSIA 245

[Close]

BLAST of CsaV3_3G000840 vs. Swiss-Prot
Match: sp|Q7XA78|D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-39
Identity = 87/224 (38.84%), Postives = 124/224 (55.36%), Query Frame = 0


Query: 26  SRFIRCGIAEASGEPAPLGQKTKYN----DGPFEKVFMTLFARKMEKFANAKEQRKKKEG 85
           S+ +  G  +A+ E A +      N    D  F K+ +   ++ ++  A      K    
Sbjct: 38  SKPVYSGKLKAAKETARIETSNTKNASIEDSFFSKIAINYLSKNLQDAAGISSSSKST-- 97

Query: 86  LWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSMLPPGAPAQFRKLFPPTKWACE 145
                  DY+R VD + RV +     QQ   V   L   LP    +  +  FPP+K + E
Sbjct: 98  -------DYDRLVDTATRVSRNFDTKQQHEFVLSSLDRALPTVISSLIKMAFPPSKVSRE 157

Query: 146 FNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQD 205
             AL T   F WLVGPSEV E EVNG K++S V+I+KCR+LE S CVGMC ++CKIP+Q 
Sbjct: 158 LFALFTTISFAWLVGPSEVRETEVNGRKEKSVVYIEKCRFLEQSNCVGMCTHICKIPSQI 217

Query: 206 FFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYK 246
           F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  KQPC++
Sbjct: 218 FIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFE 252

[Close]

BLAST of CsaV3_3G000840 vs. Swiss-Prot
Match: sp|C7AU21|D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.8e-38
Identity = 80/202 (39.60%), Postives = 122/202 (60.40%), Query Frame = 0


Query: 47  TKYNDGPFEKVFMTLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTR 106
           T Y D  F+K+ +   +R +++ +  K +   K+G        YE  +D +  + +  + 
Sbjct: 78  TVYRDSWFDKLAIGYLSRNLQEASGLKNE---KDG--------YESLIDAALAISRIFSL 137

Query: 107 MQQQIVVREVLLSMLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVN 166
            +Q  +V + L   LP       + + PP++++ E+ A  T  FF WLVGP EV+E EV 
Sbjct: 138 DKQSEIVTQALERALPSYILTMIKVMMPPSRFSREYFAAFTTIFFPWLVGPCEVMESEVE 197

Query: 167 GIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIY 226
           G K+++ V+I KCR+LE++ CVGMC N+CKIP Q F  +  G+ + M+PNFEDMSCEMI+
Sbjct: 198 GRKEKNVVYIPKCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVYMSPNFEDMSCEMIF 257

Query: 227 GQVPPPFEEDPVSKQPCYKDIC 249
           GQ PP  E+DP  KQPC++  C
Sbjct: 258 GQQPP--EDDPALKQPCFRTKC 266

[Close]

BLAST of CsaV3_3G000840 vs. TrEMBL
Match: tr|A0A0A0L682|A0A0A0L682_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 2.8e-153
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60

Query: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120
           LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM
Sbjct: 61  LFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLSM 120

Query: 121 LPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCR 180
           LPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCR
Sbjct: 121 LPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCR 180

Query: 181 YLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSK 240
           YLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSK
Sbjct: 181 YLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSK 240

Query: 241 QPCYKDICSMAITSAPLCPKLLA 264
           QPCYKDICSMAITSAPLCPKLLA
Sbjct: 241 QPCYKDICSMAITSAPLCPKLLA 263

[Close]

BLAST of CsaV3_3G000840 vs. TrEMBL
Match: tr|A0A1S3BKU4|A0A1S3BKU4_CUCME (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490700 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 3.3e-146
Identity = 256/264 (96.97%), Postives = 259/264 (98.11%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKI-KSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60
           MVVLKLQSIQFFTAPPKEIRNRKI KSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM
Sbjct: 1   MVVLKLQSIQFFTAPPKEIRNRKISKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFM 60

Query: 61  TLFARKMEKFANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLS 120
           TLFARKMEKFANAKEQRKKKEG +WDFLYDYERFVDVSKRVMQGK RMQQQ+VVREVLLS
Sbjct: 61  TLFARKMEKFANAKEQRKKKEG-FWDFLYDYERFVDVSKRVMQGKNRMQQQLVVREVLLS 120

Query: 121 MLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 180
           MLPPGAPAQFRKLFPPTKWACEFNA ITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC
Sbjct: 121 MLPPGAPAQFRKLFPPTKWACEFNASITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 180

Query: 181 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 240
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 181 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 240

Query: 241 KQPCYKDICSMAITSAPLCPKLLA 264
           KQPCYKDICSM+ TSAPLCPKLLA
Sbjct: 241 KQPCYKDICSMSNTSAPLCPKLLA 263

[Close]

BLAST of CsaV3_3G000840 vs. TrEMBL
Match: tr|A0A2P4IRY8|A0A2P4IRY8_QUESU (Beta-carotene isomerase d27, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_77624 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 2.6e-114
Identity = 206/267 (77.15%), Postives = 226/267 (84.64%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEI---RNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKV 60
           MVVL LQ +QF  +PP+      NR  K   IRCGIAE SGEPAPLGQKTKYNDG FE+ 
Sbjct: 1   MVVLSLQVVQFRPSPPQHFPLHSNRPSKGNIIRCGIAEPSGEPAPLGQKTKYNDGFFERA 60

Query: 61  FMTLFARKMEKF-ANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREV 120
           FMTLFARKMEKF A  K   + K+  WWD  +DYE FV+VSKRVMQG++RMQQQ VVREV
Sbjct: 61  FMTLFARKMEKFAAPVKAGTETKKNGWWD--HDYESFVEVSKRVMQGRSRMQQQQVVREV 120

Query: 121 LLSMLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHI 180
           LLSMLPPGAPAQF+KLFPPTKWA EFNA +TVPFFQWLVGPSEVVEVEV+G+KQ+SGV I
Sbjct: 121 LLSMLPPGAPAQFKKLFPPTKWAAEFNAALTVPFFQWLVGPSEVVEVEVDGVKQQSGVLI 180

Query: 181 KKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEED 240
           KKCRYLENSGCVGMCVNMCK PTQDFFTNEFGLPLTM PNFEDMSCEM+YGQVPPPFEED
Sbjct: 181 KKCRYLENSGCVGMCVNMCKFPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQVPPPFEED 240

Query: 241 PVSKQPCYKDICSMAITSAPLCPKLLA 264
           PVSKQPCY DICS++  S+ +CPKL A
Sbjct: 241 PVSKQPCYADICSISNPSSSVCPKLQA 265

[Close]

BLAST of CsaV3_3G000840 vs. TrEMBL
Match: tr|V4TRD9|V4TRD9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021724mg PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 7.5e-114
Identity = 203/264 (76.89%), Postives = 223/264 (84.47%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVVL LQ ++F T P +    R+   +  RCGIAE SGEPAPLGQKTKYNDG FEK FMT
Sbjct: 1   MVVLSLQVVRFPTPPYQISLRRQSTDKITRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMT 60

Query: 61  LFARKMEKFAN-AKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLS 120
           LFARKMEKFA+ AK + + K+  W+DF YDYE FVDVSKRVM+G++R QQQ VVREVLLS
Sbjct: 61  LFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120

Query: 121 MLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 180
           MLPPGAPAQFRKLFPPTKWA EFNA +TVPFF WLVGPSEVVEVE+NG KQRSGVHIKKC
Sbjct: 121 MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKC 180

Query: 181 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 240
           RYLENSGCVGMCVNMCK PTQDFFT EFGLPLTM PNFEDMSCEM+YGQVPP FE+DPVS
Sbjct: 181 RYLENSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPPSFEDDPVS 240

Query: 241 KQPCYKDICSMAITSAPLCPKLLA 264
            QPC+ DICS A  S+P+CPKL A
Sbjct: 241 TQPCFTDICSNANPSSPVCPKLQA 264

[Close]

BLAST of CsaV3_3G000840 vs. TrEMBL
Match: tr|A0A251P7V7|A0A251P7V7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G131200 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.7e-113
Identity = 204/264 (77.27%), Postives = 222/264 (84.09%), Query Frame = 0


Query: 1   MVVLKLQSIQFFTAPPKEIRNRKIKSRFIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMT 60
           MVVL LQ +QF T     +         IRCGIAE SGEPAP+GQKTKYNDG FEK FMT
Sbjct: 1   MVVLSLQPVQFSTPKHMLLCRPGSTGYPIRCGIAEPSGEPAPMGQKTKYNDGFFEKGFMT 60

Query: 61  LFARKMEKF-ANAKEQRKKKEGLWWDFLYDYERFVDVSKRVMQGKTRMQQQIVVREVLLS 120
           LFARKM+KF A  K + + KE  WW+  YDYE FVDVSKRVMQG++R+QQQ VVREVLLS
Sbjct: 61  LFARKMKKFAAPVKARTETKEKAWWE--YDYESFVDVSKRVMQGRSRVQQQQVVREVLLS 120

Query: 121 MLPPGAPAQFRKLFPPTKWACEFNALITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKC 180
           MLPPGAPAQFRKLFPPTKWA EFNA +TVPFF WLVGPSEVVEVE+NG+KQRSGVHIKKC
Sbjct: 121 MLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVVEVEINGVKQRSGVHIKKC 180

Query: 181 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 240
           RYLENSGCVGMCVNMCK PTQDFFTNEFGLPLTM PNFEDMSCEM+YGQVPPPFEEDPVS
Sbjct: 181 RYLENSGCVGMCVNMCKFPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQVPPPFEEDPVS 240

Query: 241 KQPCYKDICSMAITSAPLCPKLLA 264
           KQPC+ DICS+A  S+ +CPKL A
Sbjct: 241 KQPCFTDICSIATPSSSVCPKLQA 262

The following BLAST results are available for this feature:

BLAST of CsaV3_3G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650294.1	4.2e-153	100.00	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis sativus] >KGN5566...	[more]
XP_008448557.1	5.0e-146	96.97	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]	[more]
XP_023540699.1	2.9e-133	89.18	beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022942554.1	1.4e-132	88.43	beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]	[more]
XP_023005623.1	9.2e-132	88.43	beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsaV3_3G000840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64680.1	8.6e-108	74.90	unknown protein	[more]
AT1G03055.1	1.2e-40	38.84	unknown protein	[more]
AT4G01995.1	4.1e-33	34.25	unknown protein	[more]

BLAST of CsaV3_3G000840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XA78\|D27_ARATH	2.1e-39	38.84	Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D2...	[more]
sp\|C7AU21\|D27_ORYSJ	1.8e-38	39.60	Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CsaV3_3G000840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L682\|A0A0A0L682_CUCSA	2.8e-153	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1	[more]
tr\|A0A1S3BKU4\|A0A1S3BKU4_CUCME	3.3e-146	96.97	beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034907...	[more]
tr\|A0A2P4IRY8\|A0A2P4IRY8_QUESU	2.6e-114	77.15	Beta-carotene isomerase d27, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_77...	[more]
tr\|V4TRD9\|V4TRD9_9ROSI	7.5e-114	76.89	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021724mg PE=4 ...	[more]
tr\|A0A251P7V7\|A0A251P7V7_PRUPE	1.7e-113	77.27	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G131200 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038938	D27-like
IPR025114	DUF4033

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016556	mRNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G000840.1	CsaV3_3G000840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025114	Domain of unknown function DUF4033	PFAM	PF13225	DUF4033	coord: 153..235 e-value: 9.5E-39 score: 131.2
None	No IPR available	PANTHER	PTHR33591:SF1	SUBFAMILY NOT NAMED	coord: 15..261
IPR038938	Beta-carotene isomerase D27-like	PANTHER	PTHR33591	FAMILY NOT NAMED	coord: 15..261

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G000840	CSPI03G00800	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G000840	Cucsa.322570	Cucumber (Gy14) v1	cgycucB499
CsaV3_3G000840	CmaCh06G005820	Cucurbita maxima (Rimu)	cmacucB0967
CsaV3_3G000840	CmoCh06G005860	Cucurbita moschata (Rifu)	cmocucB0955
CsaV3_3G000840	Cp4.1LG08g09190	Cucurbita pepo (Zucchini)	cpecucB1059
CsaV3_3G000840	Carg16268	Silver-seed gourd	carcucB0715
CsaV3_3G000840	Cla008891	Watermelon (97103) v1	cucwmB209
CsaV3_3G000840	MELO3C013771	Melon (DHL92) v3.5.1	cucmeB246
CsaV3_3G000840	ClCG10G000790	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G000840	MELO3C013771.2	Melon (DHL92) v3.6.1	cucmedB231
CsaV3_3G000840	Cla97C10G185370	Watermelon (97103) v2	cucwmbB182
CsaV3_3G000840	BhiUN179G28	Wax gourd	cucwgoB343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G000840	Silver-seed gourd	carcucB0462
CsaV3_3G000840	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G000840	Cucurbita maxima (Rimu)	cmacucB0380
CsaV3_3G000840	Cucurbita moschata (Rifu)	cmocucB0377
CsaV3_3G000840	Cucurbita pepo (Zucchini)	cpecucB0255
CsaV3_3G000840	Bottle gourd (USVL1VR-Ls)	cuclsiB250