Carg16268 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16268
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	beta-carotene isomerase D27, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_077 : 418603 .. 422613 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATATCTAAACGTTAGCCATCAAGTTCATCAAAACCTCTTGATGATCTCGGATCGATGATATTGTTCACTTCAACGGTCTCAACCGACACGATTGTAACTTCAGTTTCACCTAAAGTACTTCATTCCGTTCTTTATATCTTAATGTCTGTCCTGTTCTTGCCCACGTCTCTAAGATTGTGAATAGATAGAGACAAGACATGAGACGATATCAACCACCCAGAACGGGTATCGTATGCATAGAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATACAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCGAAGAAAATGGAGAGATACGCAAATTCCAAGGAGCAAATGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGGTCGGTCTGTTTTTCTTTCTGTAAATTTTCGTCTTCTCCGATCATCGTGTGAACTGAATCGGAAACTGATGATCGCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTAATTTCATTGAATCCTTTGTGTTCTGTTTCACTTTCTTGGCTCTGTTTTCTGTTGATTTGAACGTTTGTTTGAGTTCTTCAATTGAGGAATTATGTGCTCTGACTCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGCTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGGGTTGATAATCGATAGTTTATGTGCTCTGAATCTGTAGTGTTGATGATCGATAGTTTATGTGCTATGAACTGGTAGGGTGCTCTGACTCTGTAGTGTTGATGATCGGTAGTTTATGCGCTATGAACTGCTAGGGATAGTGAGTGATAATTGCTTATGTGCTGTTCTACTAGCTGCATTAGGGATAGTAGTTGGACAAACTCATGGGTTTTGATGGTACTCTAAATTATTCTCCGAACTCGTTGTTAGATCCCACATTGGTTGAAGAGGGGAACGAAACATTCCTAGTAAGGGCGTGGAAACTTCTCCTTAGTAGATTTGTTTTAAAATATCGAGGGGAAGCCTAAAAGAGAAAGCCTAAAGAGGACAATATAGAAGTGGGCTTGAGGTGTTATAAATGGTATTAGAGCTGGACATTGGGTGGTGTGATAATGAGGACGCTGAGCCTCTAAGGGGGTGGATTGTGAGATCCCACATTAGTTGGAGAGAGGAACGAAACATTTCTTATAAGAGTGTGAAAACTTCTCCCTAGTAGATGCGTTCTAGAACTTTGAGGGGAAGCTCAGAATGGAAAGCCTGAATAAGACAATTTCTACTAGCAGTGGGTTTGGGCTGTTGCAAATGGTATCAGAGCTAGATATCGAGCAGTGTGCCAATAAGAACGTTGAGCCTCCAAAGGGGGTGAATTGTGAGATCCTACATTGGTTGGAGAGAGGAACAAAGGATTTCTTATAAGGGTGTGGAAACATCTCGCTAGCAGATGCGTTCTAAAACCAGCAGATGCGTTCTAAAACCTTGAGAGGAAGCCAAGGAAAGCCCAAAGAGGACAATATTTGCTAACGGTGGGCTTGGGTTGCTACAAATGGTATCAGAGCCAGACACCGAGCGGTGTGACAACGAGGACGCTGAGCCCCCAAGGAGAGTGGAACCCAGAAGGGAAAACCCAAAGAGGACAACATCTACTAGCGGTGGACTTGGGTTGTTACGAATGGTATCAAACAAGACAAATGTGTAAGGTGCAATGCACGAGGCTTCTAGTCTTCTAAAGTGTTGAGAGCATGGTTTAAAAGGTTAAAAATTTATTTTAAGATCAGCTTCTAGCATTTAGCAGGGAGTAGTTTCCACACCCTTAGAAAAAATGTTTTGTTCCCCTCTCCAACCGACGTGGGATCTCACAATCCATCTCCCTTGGGGGTCCCAACGTCCTCGCTAGTACAACGCTTGGTGCCTGACATTAATACCATTTGTAACAGTCCAAGCCCACCGCTAGCAGTTATTGTCCTCTTTGGACTTTCCCTTCCGGGCTTCTGCTCAAAGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCTACACCCTTATAAGGAATGTTTCGTTTCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCTTTGGGGTCCCAACGTCCTCGCTAGCATACTGCTCGACGCCTGGCTCTGATACCATTTGTAACAGTCCAAGCCCACCGCTAGCAGAAATTGTCCTCTTTAGGCTTTCCCTTCCGAGCTTCCCCTCAAAGTTTTAAAATGCCTCTACTAGGAAGAGGTTTCCTCACCTTATAAGAGGTTTCTATGGTACTTGAAAAGAACAGTATATTTCAGCTGTTGGTTTACTCAACCGCAACTCCTTGAGTCTCTGAGAGTTTAAGGATGTTAACTGACCCAATGGCGTCGATAATAGGTTACGATGCAGTTGGCTTGAATCTGTGTTTTCGGACCGTGCAACATCTGCCTAATCCTACCATATTTAGTTCCGAAACTCACGAAATTATGATCTTGTTCTTCCTCGTGTGTAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAATTTCTAGTCGATTTAGGAAAACGCTTCTCCTTCGTCTGTCTCCGTCGATAAGCTAAGACTACAACATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAGTATGTATACTGTTTTACAAGAACATACATACATATATATGCATTTTCAGTACTGTTTTGACTGATCAGATTGGATTCAAGGCCTAAAAACCACAATTTGTTCTTGCTTGATCACCTTGTTAGATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTAAGAGGAATCTGTTAGTTCTTGTAAAGATCAAGTATGTTCTTGGTTTTTAGCTGATTTGTGTTCTTCATCTGTGTTTGTTTGCTGACAGGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCATACGCTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACAATGTTGTTGTTTCTTTGCAAACTTCACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACGTTCGGTCGGGATTTGAGCATTTGACTTACTTTTTTCTGGTCGAAGATTTAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACTAATTTATGATTTAATGTTTTATCTCTATATATAGAGAGAGGAACGAACAATTTTTTATAAAAATGTGGAAACCTCTCTCTAGTAAATGCGTTTTGAAACTGTGAGGCTGACGGTGATATATAACAGGCC

mRNA sequence

AATAATATCTAAACGTTAGCCATCAAGTTCATCAAAACCTCTTGATGATCTCGGATCGATGATATTGTTCACTTCAACGGTCTCAACCGACACGATTGTAACTTCAGTTTCACCTAAAGTACTTCATTCCGTTCTTTATATCTTAATGTCTGTCCTGTTCTTGCCCACGTCTCTAAGATTGTGAATAGATAGAGACAAGACATGAGACGATATCAACCACCCAGAACGGGTATCGTATGCATAGAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATACAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCGAAGAAAATGGAGAGATACGCAAATTCCAAGGAGCAAATGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAATTTCTAGTCGATTTAGGAAAACGCTTCTCCTTCGTCTGTCTCCGTCGATAAGCTAAGACTACAACATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCATACGCTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACAATGTTGTTGTTTCTTTGCAAACTTCACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACGTTCGGTCGGGATTTGAGCATTTGACTTACTTTTTTCTGGTCGAAGATTTAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACTAATTTATGATTTAATGTTTTATCTCTATATATAGAGAGAGGAACGAACAATTTTTTATAAAAATGTGGAAACCTCTCTCTAGTAAATGCGTTTTGAAACTGTGAGGCTGACGGTGATATATAACAGGCC

Coding sequence (CDS)

ATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAA

Protein sequence

MNERESVHSIFFNVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

Homology

[Close]

BLAST of Carg16268 vs. NCBI nr
Match: XP_022942554.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata])

HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSNPSSSLCPKLLA
Sbjct: 242 KQPCYKDICSMSNPSSSLCPKLLA 265

[Close]

BLAST of Carg16268 vs. NCBI nr
Match: XP_023540699.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 6.3e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSNPSSSLCPKLLA
Sbjct: 242 KQPCYKDICSMSNPSSSLCPKLLA 265

[Close]

BLAST of Carg16268 vs. NCBI nr
Match: XP_023005623.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 9.1e-43
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPP FEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPLFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSNPSSSLCPKLLA
Sbjct: 242 KQPCYKDICSMSNPSSSLCPKLLA 265

[Close]

BLAST of Carg16268 vs. NCBI nr
Match: XP_008448557.1 (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 4.5e-42
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 180 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 239

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSN S+ LCPKLLA
Sbjct: 240 KQPCYKDICSMSNTSAPLCPKLLA 263

[Close]

BLAST of Carg16268 vs. NCBI nr
Match: XP_021767924.1 (beta-carotene isomerase D27, chloroplastic-like [Chenopodium quinoa])

HSP 1 Score: 176.0 bits (445), Expect = 6.5e-41
Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP FEDMSCEM+YGQVPPPFEED VS
Sbjct: 184 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPKFEDMSCEMVYGQVPPPFEEDEVS 243

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKD+CSM+NPS+SLCPKLL+
Sbjct: 244 KQPCYKDLCSMANPSASLCPKLLS 267

[Close]

BLAST of Carg16268 vs. TAIR10
Match: AT1G64680.1 (unknown protein)

HSP 1 Score: 163.3 bits (412), Expect = 8.0e-41
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPN+EDMSCEMIYGQ PP FEED  +
Sbjct: 167 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVAT 226

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPC  DICSMSNPSS +CPKL A
Sbjct: 227 KQPCLADICSMSNPSSPICPKLEA 250

[Close]

BLAST of Carg16268 vs. TAIR10
Match: AT1G03055.1 (unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-19
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           R+LE S CVGMC ++CKIP+Q F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  
Sbjct: 187 RFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAM 246

Query: 81  KQPCYK 87
           KQPC++
Sbjct: 247 KQPCFE 252

[Close]

BLAST of Carg16268 vs. TAIR10
Match: AT4G01995.1 (unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 4.0e-16
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           +YLE S CVG+C+N CK+PTQ FF +  G+PL M PNF+D SC+  +G  PP  E+D   
Sbjct: 177 QYLEESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAPP--EDDGNV 236

Query: 81  KQPCYKDICSMSNP---SSSLCP 101
            +PC+ + CS++      S  CP
Sbjct: 237 NEPCF-ETCSIAGRRKLKSGECP 256

[Close]

BLAST of Carg16268 vs. Swiss-Prot
Match: sp|C7AU21|D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 13  NVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPP 72
           NV+  P  R+LE++ CVGMC N+CKIP Q F  +  G+ + M+PNFEDMSCEMI+GQ PP
Sbjct: 192 NVVYIPKCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVYMSPNFEDMSCEMIFGQQPP 251

Query: 73  PFEEDPVSKQPCYKDIC 90
             E+DP  KQPC++  C
Sbjct: 252 --EDDPALKQPCFRTKC 266

[Close]

BLAST of Carg16268 vs. Swiss-Prot
Match: sp|Q7XA78|D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-18
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           R+LE S CVGMC ++CKIP+Q F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  
Sbjct: 187 RFLEQSNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAM 246

Query: 81  KQPCYK 87
           KQPC++
Sbjct: 247 KQPCFE 252

[Close]

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A1S3BKU4|A0A1S3BKU4_CUCME (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490700 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.0e-42
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 180 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 239

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSMSN S+ LCPKLLA
Sbjct: 240 KQPCYKDICSMSNTSAPLCPKLLA 263

[Close]

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A0A0L682|A0A0A0L682_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.4e-41
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 180 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 239

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCYKDICSM+  S+ LCPKLLA
Sbjct: 240 KQPCYKDICSMAITSAPLCPKLLA 263

[Close]

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A2P4IRY8|A0A2P4IRY8_QUESU (Beta-carotene isomerase d27, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_77624 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCK PTQDFFTNEFGLPLTM PNFEDMSCEM+YGQVPPPFEEDPVS
Sbjct: 182 RYLENSGCVGMCVNMCKFPTQDFFTNEFGLPLTMIPNFEDMSCEMVYGQVPPPFEEDPVS 241

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCY DICS+SNPSSS+CPKL A
Sbjct: 242 KQPCYADICSISNPSSSVCPKLQA 265

[Close]

BLAST of Carg16268 vs. TrEMBL
Match: tr|K4CIZ7|K4CIZ7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101266539 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40
Identity = 76/84 (90.48%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS
Sbjct: 184 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 243

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCY +IC+++NPSS++CPKL A
Sbjct: 244 KQPCYANICTIANPSSNVCPKLSA 267

[Close]

BLAST of Carg16268 vs. TrEMBL
Match: tr|A0A2G3APJ6|A0A2G3APJ6_CAPAN (beta-carotene isomerase D27, chloroplastic-like OS=Capsicum annuum OX=4072 GN=LOC107856756 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-40
Identity = 75/84 (89.29%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 21  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVS 80
           RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEM+YGQVPPPFEEDPVS
Sbjct: 183 RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMVYGQVPPPFEEDPVS 242

Query: 81  KQPCYKDICSMSNPSSSLCPKLLA 105
           KQPCY +IC+++NPSS++CPKL A
Sbjct: 243 KQPCYANICTIANPSSNVCPKLSA 266

The following BLAST results are available for this feature:

BLAST of Carg16268 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942554.1	6.3e-44	100.00	beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]	[more]
XP_023540699.1	6.3e-44	100.00	beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023005623.1	9.1e-43	98.81	beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]	[more]
XP_008448557.1	4.5e-42	96.43	PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo]	[more]
XP_021767924.1	6.5e-41	91.67	beta-carotene isomerase D27, chloroplastic-like [Chenopodium quinoa]	[more]

BLAST of Carg16268 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64680.1	8.0e-41	86.90	unknown protein	[more]
AT1G03055.1	1.0e-19	53.03	unknown protein	[more]
AT4G01995.1	4.0e-16	45.78	unknown protein	[more]

BLAST of Carg16268 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|C7AU21\|D27_ORYSJ	1.5e-20	55.84	Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|Q7XA78\|D27_ARATH	1.8e-18	53.03	Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D2...	[more]

BLAST of Carg16268 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKU4\|A0A1S3BKU4_CUCME	3.0e-42	96.43	beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034907...	[more]
tr\|A0A0A0L682\|A0A0A0L682_CUCSA	7.4e-41	94.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1	[more]
tr\|A0A2P4IRY8\|A0A2P4IRY8_QUESU	2.8e-40	91.67	Beta-carotene isomerase d27, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_77...	[more]
tr\|K4CIZ7\|K4CIZ7_SOLLC	2.8e-40	90.48	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101266539 PE=4 SV=1	[more]
tr\|A0A2G3APJ6\|A0A2G3APJ6_CAPAN	3.7e-40	89.29	beta-carotene isomerase D27, chloroplastic-like OS=Capsicum annuum OX=4072 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038938	D27-like
IPR025114	DUF4033

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16268-RA	Carg16268-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025114	Domain of unknown function DUF4033	PFAM	PF13225	DUF4033	coord: 20..76 e-value: 4.9E-29 score: 100.0
IPR038938	Beta-carotene isomerase D27-like	PANTHER	PTHR33591	FAMILY NOT NAMED	coord: 21..102
None	No IPR available	PANTHER	PTHR33591:SF1	SUBFAMILY NOT NAMED	coord: 21..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16268	Cla008891	Watermelon (97103) v1	carwmB0678
Carg16268	Csa3G002850	Cucumber (Chinese Long) v2	carcuB0701
Carg16268	ClCG10G000790	Watermelon (Charleston Gray)	carwcgB0655
Carg16268	CSPI03G00800	Wild cucumber (PI 183967)	carcpiB0713
Carg16268	Cucsa.322570	Cucumber (Gy14) v1	carcgyB0759
Carg16268	CmaCh06G005820	Cucurbita maxima (Rimu)	carcmaB0957
Carg16268	CmoCh06G005860	Cucurbita moschata (Rifu)	carcmoB0933
Carg16268	Cp4.1LG08g09190	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16268	CsaV3_3G000840	Cucumber (Chinese Long) v3	carcucB0715
Carg16268	Cla97C10G185370	Watermelon (97103) v2	carwmbB0705
Carg16268	BhiUN179G28	Wax gourd	carwgoB0798

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16268	Silver-seed gourd	carcarB442
Carg16268	Cucumber (Gy14) v2	carcgybB0677
Carg16268	Cucurbita maxima (Rimu)	carcmaB0956
Carg16268	Cucurbita moschata (Rifu)	carcmoB0932
Carg16268	Cucurbita pepo (Zucchini)	carcpeB0955
Carg16268	Bottle gourd (USVL1VR-Ls)	carlsiB621
Carg16268	Melon (DHL92) v3.5.1	carmeB0681
Carg16268	Melon (DHL92) v3.6.1	carmedB0693