ClCG03G017870 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G017870
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionDNA binding protein, putative
LocationCG_Chr03 : 33022519 .. 33023469 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCACCCTCATCTTCCTCCTCCATCCTGCACCCCAAATCCACCTACGAAAATGCCGAAGGAGTGTGGGAATTGCGGCTCTCAGGGTCGTTGGATTCTGCATCATGTTCGTATACGAGGCATTAATCGTCGACTTTGCACCTCCTGCGTTCTTCGTCTTCATCCCAGTTCGTTTTGCCCTTCTTGTTTCCAGTTCTATGACCTATCTGTTTCCCCTCACCCCTCCAATCGTTTCACTTGCTCTAGGTGTTCTTCTATTACGCATTCTCACTGTGTTGTCAATCCGGCTTGTCCCGATACACAGCTTCTCTCATCCTCTACCTCCTCTTATCTTTGCCCTCCCTGCGCCAAACCCAATTTCTCTTTTTTCGATTTGGACTCTAAGCCGCGGATTTCTCCCAAGTCTATTGACAGGAAGACCGCCGTGGTGTTGCTCTGTGCGGCTAAGATTGCCTCTGCATCGATGGGGAAGGCTGTGATTGTGGCGCGGGCGGATGCGGAGAGGAAAGTGAGGGAGGCGGCTATGGCGAGGAAGAGGGCGAGAGAGGCTCTTGAGCATGTTGGTTTTGTTTTGGCTAGAGAAAGAGCTAGGCGTAAGGAGGAGGGGTCTGTGGAGGTTTCGGGTTCTGGGAATTTGGGGATGAAGGAGAAAGAAAGGAATAGGAATTTGGGTTCTATGGTGAAAGCCGAGAATCCTTTTGAGGTTCCTGCAGTTTCAACTATGAACACTGCTAGTGCTTTACCTCAAAGGAGGGAGAGCTTGAATGGGTTTGTGAGACAGATGTCTATGGTGAAGAACGAGGTGGCTGCTTCCATGGAGGAAGTTGTAAGGCAGAAAAATGTTGAGGCTGACCGCAATAACAACATTGGCTTAAATGAGAAGGAGAAGTCGGAGAATGGCGAAGTTGAGAATGATCATATTGGAGGAACTGTCAATATCACAAAATAG

mRNA sequence

ATGAATCACCCTCATCTTCCTCCTCCATCCTGCACCCCAAATCCACCTACGAAAATGCCGAAGGAGTGTGGGAATTGCGGCTCTCAGGGTCGTTGGATTCTGCATCATGTTCGTATACGAGGCATTAATCGTCGACTTTGCACCTCCTGCGTTCTTCGTCTTCATCCCAGTTCGTTTTGCCCTTCTTGTTTCCAGTTCTATGACCTATCTGTTTCCCCTCACCCCTCCAATCGTTTCACTTGCTCTAGGTGTTCTTCTATTACGCATTCTCACTGTGTTGTCAATCCGGCTTGTCCCGATACACAGCTTCTCTCATCCTCTACCTCCTCTTATCTTTGCCCTCCCTGCGCCAAACCCAATTTCTCTTTTTTCGATTTGGACTCTAAGCCGCGGATTTCTCCCAAGTCTATTGACAGGAAGACCGCCGTGGTGTTGCTCTGTGCGGCTAAGATTGCCTCTGCATCGATGGGGAAGGCTGTGATTGTGGCGCGGGCGGATGCGGAGAGGAAAGTGAGGGAGGCGGCTATGGCGAGGAAGAGGGCGAGAGAGGCTCTTGAGCATGTTGGTTTTGTTTTGGCTAGAGAAAGAGCTAGGCGTAAGGAGGAGGGGTCTGTGGAGGTTTCGGGTTCTGGGAATTTGGGGATGAAGGAGAAAGAAAGGAATAGGAATTTGGGTTCTATGGTGAAAGCCGAGAATCCTTTTGAGGTTCCTGCAGTTTCAACTATGAACACTGCTAGTGCTTTACCTCAAAGGAGGGAGAGCTTGAATGGGTTTGTGAGACAGATGTCTATGGTGAAGAACGAGGTGGCTGCTTCCATGGAGGAAGTTGTAAGGCAGAAAAATGTTGAGGCTGACCGCAATAACAACATTGGCTTAAATGAGAAGGAGAAGTCGGAGAATGGCGAAGTTGAGAATGATCATATTGGAGGAACTGTCAATATCACAAAATAG

Coding sequence (CDS)

ATGAATCACCCTCATCTTCCTCCTCCATCCTGCACCCCAAATCCACCTACGAAAATGCCGAAGGAGTGTGGGAATTGCGGCTCTCAGGGTCGTTGGATTCTGCATCATGTTCGTATACGAGGCATTAATCGTCGACTTTGCACCTCCTGCGTTCTTCGTCTTCATCCCAGTTCGTTTTGCCCTTCTTGTTTCCAGTTCTATGACCTATCTGTTTCCCCTCACCCCTCCAATCGTTTCACTTGCTCTAGGTGTTCTTCTATTACGCATTCTCACTGTGTTGTCAATCCGGCTTGTCCCGATACACAGCTTCTCTCATCCTCTACCTCCTCTTATCTTTGCCCTCCCTGCGCCAAACCCAATTTCTCTTTTTTCGATTTGGACTCTAAGCCGCGGATTTCTCCCAAGTCTATTGACAGGAAGACCGCCGTGGTGTTGCTCTGTGCGGCTAAGATTGCCTCTGCATCGATGGGGAAGGCTGTGATTGTGGCGCGGGCGGATGCGGAGAGGAAAGTGAGGGAGGCGGCTATGGCGAGGAAGAGGGCGAGAGAGGCTCTTGAGCATGTTGGTTTTGTTTTGGCTAGAGAAAGAGCTAGGCGTAAGGAGGAGGGGTCTGTGGAGGTTTCGGGTTCTGGGAATTTGGGGATGAAGGAGAAAGAAAGGAATAGGAATTTGGGTTCTATGGTGAAAGCCGAGAATCCTTTTGAGGTTCCTGCAGTTTCAACTATGAACACTGCTAGTGCTTTACCTCAAAGGAGGGAGAGCTTGAATGGGTTTGTGAGACAGATGTCTATGGTGAAGAACGAGGTGGCTGCTTCCATGGAGGAAGTTGTAAGGCAGAAAAATGTTGAGGCTGACCGCAATAACAACATTGGCTTAAATGAGAAGGAGAAGTCGGAGAATGGCGAAGTTGAGAATGATCATATTGGAGGAACTGTCAATATCACAAAATAG

Protein sequence

MNHPHLPPPSCTPNPPTKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCSRCSSITHSHCVVNPACPDTQLLSSSTSSYLCPPCAKPNFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRAREALEHVGFVLARERARRKEEGSVEVSGSGNLGMKEKERNRNLGSMVKAENPFEVPAVSTMNTASALPQRRESLNGFVRQMSMVKNEVAASMEEVVRQKNVEADRNNNIGLNEKEKSENGEVENDHIGGTVNITK
Homology
[Close]
BLAST of ClCG03G017870 vs. TrEMBL
Match: A0A0A0LYS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560710 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 1.2e-157
Identity = 289/325 (88.92%), Postives = 297/325 (91.38%), Query Frame = 1 

Query: 1   MNHPHLPPPSCTPNPPTKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60
           MNHP LPPP  TPNPPTKM KECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC
Sbjct: 1   MNHPPLPPPPSTPNPPTKMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60

Query: 61  PSCFQFYDLSVSPHPSNRFTCSRCSSITHSHCVVNPACPDTQLLSSST-SSYLCPPCAKP 120
           PSCFQFYDLSVSPHPSNRFTCS+CSSITHSHCVVNPACPD QLLSS+T SSYLCPPCAKP
Sbjct: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120

Query: 121 NFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARK 180
           NFSFFD DSKPRISPKSIDRKTAVVLLCAAKIASASM KAVIVARADAERKVREAAMARK
Sbjct: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180

Query: 181 RAREALEHVGFVLARERARRKEEGSVEVSGSGNLGMKEKERNRNLGSMVKAENPFEVPAV 240
           RAREALEHVGFV+ARERARRKEE SVEVSGSGNLG+KEKERNR LG  VKAEN FE+PAV
Sbjct: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240

Query: 241 STMNTASALPQRRESLNGFVRQMSMVKNEVAASMEEVVRQKNVE-ADR---NNNIG-LNE 300
           ST+NT SAL QRRESLNGFVRQMSMVKNE AASMEE  R KNVE A+R   NNNIG LNE
Sbjct: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300

Query: 301 KEKSENGEVE---NDHIGGTVNITK 317
           KEK+ENGEVE   NDHIGGTVN TK
Sbjct: 301 KEKNENGEVEHVKNDHIGGTVNTTK 325

[Close]
BLAST of ClCG03G017870 vs. TrEMBL
Match: A0A067JHK0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23170 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.2e-58
Identity = 119/198 (60.10%), Postives = 146/198 (73.74%), Query Frame = 1 

Query: 22  ECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTC 81
           +C +C S+  W+LHHVR+RGI RRLCT CVLRLHP+SFCP CF FYD +  P PS R +C
Sbjct: 25  DCSHCRSKETWLLHHVRLRGIYRRLCTCCVLRLHPASFCPLCFTFYD-TTPPPPSKRLSC 84

Query: 82  SRCSSITHSHCVVNPACPDTQLLSSSTSSYLCPPCAKPNFSFFDLDSKPRISPKSIDRKT 141
           S CSS THSHC  +          S + ++LCPPCA PNFSFF LD   + + ++ID+K 
Sbjct: 85  SNCSSFTHSHCAPS---------QSPSFAFLCPPCADPNFSFFHLD---KTNNRTIDKKM 144

Query: 142 AVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRAREALEHVGFVLARERARRKE 201
           A VLLCAAKIA+ SM KAV+VARA+AER+VREAA+ RKRAREALE+V  V     A+RKE
Sbjct: 145 ATVLLCAAKIAACSMAKAVVVARAEAERRVREAAVCRKRAREALENVALV-----AKRKE 204

Query: 202 EGSVEVSGSGNLGMKEKE 220
             SVEVSGSGNLG +E++
Sbjct: 205 VESVEVSGSGNLGKRERD 204

[Close]
BLAST of ClCG03G017870 vs. TrEMBL
Match: B9RFQ8_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1436640 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.6e-54
Identity = 121/222 (54.50%), Postives = 148/222 (66.67%), Query Frame = 1 

Query: 12  TPNPP-TKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLS 71
           TPN   T     CGNC S+  ++LHHVR+RG++RRLCTSCVLR HPSSFCP CF FYD S
Sbjct: 6   TPNKSNTSTIGGCGNCSSKETFLLHHVRVRGVHRRLCTSCVLRAHPSSFCPCCFTFYDTS 65

Query: 72  VSPHPSNRFTCSRCSSITHSHCVVNPACPDTQLLSSSTSSYLCPPCAKPNFSFFDLDSKP 131
             P PS R +CS C+S THSHC            SS    +LCPPCA  NF+FF+ ++  
Sbjct: 66  -PPPPSKRISCSNCTSFTHSHCAT----------SSPPFPFLCPPCADANFNFFNFEN-- 125

Query: 132 RISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRAREALEHVGF 191
            I+ K+ID+  A VLLCAAKIA+ SM KAV VAR +AER+VREAA+ RKRAREALEHV F
Sbjct: 126 -INKKTIDKDMATVLLCAAKIAANSMAKAVNVARTEAERRVREAAVCRKRAREALEHVLF 185

Query: 192 VLARERARRKEEGSVEVSGSGNLGMKEKERNRNLGSMVKAEN 233
           +     A+RK+  SV+VS S +LG K    N  +GS   A +
Sbjct: 186 L-----AKRKDADSVQVSASAHLG-KRVINNITIGSPQNANS 207

[Close]
BLAST of ClCG03G017870 vs. TrEMBL
Match: A0A061F375_THECC (DNA binding protein, putative OS=Theobroma cacao GN=TCM_026837 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 7.6e-51
Identity = 110/189 (58.20%), Postives = 132/189 (69.84%), Query Frame = 1 

Query: 21  KECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFT 80
           KEC NCG+     LH VR+ GI RRLCTSCVLRLHPSSFCP+CF FY  ++ PHPS R  
Sbjct: 31  KECSNCGAHVPHFLHQVRLLGIQRRLCTSCVLRLHPSSFCPACFAFYGGTL-PHPSKRIA 90

Query: 81  CSRCSSITHSHCVVNPACPDTQLLSSSTSSYLCPPCAKPNFSFFDLDSKPRISPKSIDRK 140
           CS CSS THSHC  +          +  SSYLCPPC   +FSFF L          ID+K
Sbjct: 91  CSNCSSFTHSHCAGD----------NLLSSYLCPPCKDSSFSFFPLKDN------KIDKK 150

Query: 141 TAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRAREALEHVGFVLARERARRK 200
            A+ LLCAAKIAS+SMGKAV VA A+A+RKVREAA+ARKRAREALEH+ ++   ERAR++
Sbjct: 151 LALALLCAAKIASSSMGKAVTVAWAEADRKVREAALARKRAREALEHLLYITREERARKE 202

Query: 201 EEG-SVEVS 209
            +  SV++S
Sbjct: 211 NDNVSVDLS 202

[Close]
BLAST of ClCG03G017870 vs. TrEMBL
Match: A0A067DPC4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025319mg PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.8e-50
Identity = 117/237 (49.37%), Postives = 146/237 (61.60%), Query Frame = 1 

Query: 1   MNHPHLPPPSCTPNPPTKMPK------ECGNCGSQGRWILHHVRIRGINRRLCTSCVLRL 60
           MNH    PPS TP PP   P       +CGNCG+     L +VR+RGI+RRLCT CVL+L
Sbjct: 1   MNHQ---PPSTTPRPPLPPPSPTTTTGDCGNCGAHVATFLFNVRLRGIHRRLCTKCVLKL 60

Query: 61  HPSSFCPSCFQFYDLSVSPHPSNRFTCSRCSSITHSHCVVNPACPDTQLLSSSTSSYLCP 120
           HPSSFCP CF FYD S  PHPS R  CS+CSS THSHC  +P  P           YLC 
Sbjct: 61  HPSSFCPVCFAFYD-SNPPHPSKRQACSQCSSFTHSHCATSPPSP-----------YLCR 120

Query: 121 PCAKPNFSFFDL-DSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVRE 180
            C+  ++S   L +  P  SPK ID K+A ++LCAAKIAS+SM KAV VAR +AE+KVR+
Sbjct: 121 LCSPSSYSSITLMNDMPSSSPKRIDDKSAAMVLCAAKIASSSMAKAVTVARNEAEKKVRD 180

Query: 181 AAMARKRAREALEHVGFVLARERARRKEEGSVEVSGSGNLGMKEKERNRNLGSMVKA 231
           AA+ARK+AREALE VG ++ +            +S   N   K    N++ GS+V+A
Sbjct: 181 AALARKKAREALERVGVLITK------------ISNQNNNNNK-NNNNKDGGSVVQA 209

[Close]
BLAST of ClCG03G017870 vs. TAIR10
Match: AT1G09520.1 (AT1G09520.1 LOCATED IN: chloroplast)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-37
Identity = 85/195 (43.59%), Postives = 112/195 (57.44%), Query Frame = 1 

Query: 10  SCTPNPPTKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDL 69
           S T +      + C +CGS   W++H VR+R   R  CT C+LR HP+SFCP CF  YD 
Sbjct: 13  SATSDAAANSTERCDDCGSSDAWVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYDS 72

Query: 70  SVSPHPSNRFTCS--RCSSITHSHCVVNPACPDTQLLSSSTSSYLCPPCAKPN-FSFFDL 129
           S  P    R +CS   C S+TH HC  +           S  SYLCPPC  PN FSFF  
Sbjct: 73  S--PPSFRRVSCSIKGCHSLTHIHCAGD----------ESHLSYLCPPCRDPNSFSFF-- 132

Query: 130 DSKPRISPKS---IDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRARE 189
             +P +       +D+  +   LCAAKIA++SM KAV+ A+ + +R+ +EAA+A+KRARE
Sbjct: 133 --RPIVDENGSRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRARE 191

Query: 190 ALEHVGFVLARERAR 199
           ALE V  + A+E+AR
Sbjct: 193 ALEQVVMLDAKEKAR 191

[Close]
BLAST of ClCG03G017870 vs. TAIR10
Match: AT3G17460.1 (AT3G17460.1 PHD finger family protein)

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-23
Identity = 67/201 (33.33%), Postives = 99/201 (49.25%), Query Frame = 1 

Query: 16  PTKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHP 75
           P +  +EC  C  +    +H V   G  RRLCT C+L+ +   FC  CF  +D +V P  
Sbjct: 3   PEQKQRECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDNAVPPQA 62

Query: 76  SNRFTCSRCSSITHSHCVVNPACPDTQLLSSST----SSYLCPPCAKPNFSFF------- 135
             R  C  C S TH  C   P        SSS     SS+ C PC+ PNF+FF       
Sbjct: 63  --RIICVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFPKSRVNE 122

Query: 136 DLDSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRAREA 195
           D+  +  ++PKS     A+ L+ A  I+ A+M KAV + + +A +K+  A  A+ RA+ A
Sbjct: 123 DVPDETPLTPKS-----AMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGA 182

Query: 196 LEHVGFVLARE---RARRKEE 203
           L ++  ++ R+     +RKE+
Sbjct: 183 LTNLQDIVIRQSKVTGKRKED 196

[Close]
BLAST of ClCG03G017870 vs. NCBI nr
Match: gi|659099270|ref|XP_008450515.1| (PREDICTED: uncharacterized protein LOC103492096 [Cucumis melo])

HSP 1 Score: 575.1 bits (1481), Expect = 7.6e-161
Identity = 293/325 (90.15%), Postives = 300/325 (92.31%), Query Frame = 1 

Query: 1   MNHPHLPPPSCTPNPPTKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60
           MNHPHLPPP  TPNPPTKM KECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC
Sbjct: 1   MNHPHLPPPPSTPNPPTKMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60

Query: 61  PSCFQFYDLSVSPHPSNRFTCSRCSSITHSHCVVNPACPDTQLLSS-STSSYLCPPCAKP 120
           PSCFQFYDLSVSPHPSNRFTCS+CSSITHSHCVVNPACPD QLLSS S+SSYLCPPCAKP
Sbjct: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTSSSSYLCPPCAKP 120

Query: 121 NFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARK 180
           NFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIAS SMGKA IVARADAERKVREAAMARK
Sbjct: 121 NFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASTSMGKAAIVARADAERKVREAAMARK 180

Query: 181 RAREALEHVGFVLARERARRKEEGSVEVSGSGNLGMKEKERNRNLGSMVKAENPFEVPAV 240
           RAREALEHVGFVLARERARRKEE SVEVSGSGNLGMKEKERNRNLG  VKAEN FE+PAV
Sbjct: 181 RAREALEHVGFVLARERARRKEEASVEVSGSGNLGMKEKERNRNLGPTVKAENAFEIPAV 240

Query: 241 STMNTASALPQRRESLNGFVRQMSMVKNEVAASMEEVVRQKNVE-ADR---NNNIG-LNE 300
           ST+NT +AL QRRESLNGFVRQMSMVKNEVAASMEE  R KNVE A+R   NNNIG LNE
Sbjct: 241 STLNTGTALTQRRESLNGFVRQMSMVKNEVAASMEESARHKNVEVAERLQSNNNIGLLNE 300

Query: 301 KEKSENGEVE---NDHIGGTVNITK 317
           KEK+ENGEVE   NDHIGGTVN TK
Sbjct: 301 KEKNENGEVEHVKNDHIGGTVNTTK 325

[Close]
BLAST of ClCG03G017870 vs. NCBI nr
Match: gi|778662161|ref|XP_011659447.1| (PREDICTED: uncharacterized protein LOC105436183 [Cucumis sativus])

HSP 1 Score: 563.9 bits (1452), Expect = 1.7e-157
Identity = 289/325 (88.92%), Postives = 297/325 (91.38%), Query Frame = 1 

Query: 1   MNHPHLPPPSCTPNPPTKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60
           MNHP LPPP  TPNPPTKM KECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC
Sbjct: 1   MNHPPLPPPPSTPNPPTKMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60

Query: 61  PSCFQFYDLSVSPHPSNRFTCSRCSSITHSHCVVNPACPDTQLLSSST-SSYLCPPCAKP 120
           PSCFQFYDLSVSPHPSNRFTCS+CSSITHSHCVVNPACPD QLLSS+T SSYLCPPCAKP
Sbjct: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120

Query: 121 NFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARK 180
           NFSFFD DSKPRISPKSIDRKTAVVLLCAAKIASASM KAVIVARADAERKVREAAMARK
Sbjct: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180

Query: 181 RAREALEHVGFVLARERARRKEEGSVEVSGSGNLGMKEKERNRNLGSMVKAENPFEVPAV 240
           RAREALEHVGFV+ARERARRKEE SVEVSGSGNLG+KEKERNR LG  VKAEN FE+PAV
Sbjct: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240

Query: 241 STMNTASALPQRRESLNGFVRQMSMVKNEVAASMEEVVRQKNVE-ADR---NNNIG-LNE 300
           ST+NT SAL QRRESLNGFVRQMSMVKNE AASMEE  R KNVE A+R   NNNIG LNE
Sbjct: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300

Query: 301 KEKSENGEVE---NDHIGGTVNITK 317
           KEK+ENGEVE   NDHIGGTVN TK
Sbjct: 301 KEKNENGEVEHVKNDHIGGTVNTTK 325

[Close]
BLAST of ClCG03G017870 vs. NCBI nr
Match: gi|1009116458|ref|XP_015874783.1| (PREDICTED: uncharacterized protein LOC107411671 [Ziziphus jujuba])

HSP 1 Score: 262.7 bits (670), Expect = 8.3e-67
Identity = 161/342 (47.08%), Postives = 205/342 (59.94%), Query Frame = 1 

Query: 1   MNHPHLPPPSCT---PNPPTKMPK---------ECGNCGSQGRWILHHVRIRGINRRLCT 60
           MN P   P + +   PN   + P          ECGNCGSQ RW+LHHVRIRGI+RRLCT
Sbjct: 1   MNQPSTKPNNTSNPNPNSNARAPPALAAAAAAAECGNCGSQKRWVLHHVRIRGIHRRLCT 60

Query: 61  SCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCSRCSSITHSHCVVNP---ACPDTQLLS 120
           SCVLRLHPSSFCPSC Q YD + +P  S R TC++CSS THSHC   P   A   T   +
Sbjct: 61  SCVLRLHPSSFCPSCLQCYDTTNTPVSSKRLTCAKCSSFTHSHCASLPPPSASSTTTNTT 120

Query: 121 SSTSSYLCPPCAKPNFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASASMGKAVIVARA 180
            S+S+YLCPPCA PNF+FFDLDS P    K+ID++ A+VLLCA+KIAS SM KAVIVARA
Sbjct: 121 PSSSTYLCPPCATPNFTFFDLDSDPN---KAIDKRLALVLLCASKIASTSMAKAVIVARA 180

Query: 181 DAERKVREAAMARKRAREALEHVGFVL--ARERARRKEEGSV-EVSGSGNLGMKEKERNR 240
           +AER+VREAA+ARKRAREAL+H+  ++    ++  RK+   V EVSGS NL  K KE+  
Sbjct: 181 EAERRVREAALARKRAREALDHLALLVHSRGDKVVRKDVAEVSEVSGSANLVHKHKEKE- 240

Query: 241 NLGSMVKAENPFEVPAVSTMNTASALPQRRESLNGFVRQMSMVKNEVAASMEEVVRQKNV 300
                 K +NP   P  ++        Q +E  NGF         + + S     +  N 
Sbjct: 241 ------KEKNP---PLFAS--------QGKEMFNGFNSPRQNPAMKPSGSPPPNKKSNNG 300

Query: 301 EAD----RNNNIGLNEKEKS------ENGEVENDHIGGTVNI 315
           E +      +N  +N+KEKS      E+ E+E  + G   N+
Sbjct: 301 EPEHGCANQSNGNVNDKEKSGDLVKRESMELEQKNHGRGENV 321

[Close]
BLAST of ClCG03G017870 vs. NCBI nr
Match: gi|802755152|ref|XP_012088829.1| (PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas])

HSP 1 Score: 234.2 bits (596), Expect = 3.2e-58
Identity = 119/198 (60.10%), Postives = 146/198 (73.74%), Query Frame = 1 

Query: 22  ECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTC 81
           +C +C S+  W+LHHVR+RGI RRLCT CVLRLHP+SFCP CF FYD +  P PS R +C
Sbjct: 25  DCSHCRSKETWLLHHVRLRGIYRRLCTCCVLRLHPASFCPLCFTFYD-TTPPPPSKRLSC 84

Query: 82  SRCSSITHSHCVVNPACPDTQLLSSSTSSYLCPPCAKPNFSFFDLDSKPRISPKSIDRKT 141
           S CSS THSHC  +          S + ++LCPPCA PNFSFF LD   + + ++ID+K 
Sbjct: 85  SNCSSFTHSHCAPS---------QSPSFAFLCPPCADPNFSFFHLD---KTNNRTIDKKM 144

Query: 142 AVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRAREALEHVGFVLARERARRKE 201
           A VLLCAAKIA+ SM KAV+VARA+AER+VREAA+ RKRAREALE+V  V     A+RKE
Sbjct: 145 ATVLLCAAKIAACSMAKAVVVARAEAERRVREAAVCRKRAREALENVALV-----AKRKE 204

Query: 202 EGSVEVSGSGNLGMKEKE 220
             SVEVSGSGNLG +E++
Sbjct: 205 VESVEVSGSGNLGKRERD 204

[Close]
BLAST of ClCG03G017870 vs. NCBI nr
Match: gi|1000981027|ref|XP_015570582.1| (PREDICTED: uncharacterized protein LOC8274959 [Ricinus communis])

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 121/222 (54.50%), Postives = 148/222 (66.67%), Query Frame = 1 

Query: 12  TPNPP-TKMPKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLS 71
           TPN   T     CGNC S+  ++LHHVR+RG++RRLCTSCVLR HPSSFCP CF FYD S
Sbjct: 6   TPNKSNTSTIGGCGNCSSKETFLLHHVRVRGVHRRLCTSCVLRAHPSSFCPCCFTFYDTS 65

Query: 72  VSPHPSNRFTCSRCSSITHSHCVVNPACPDTQLLSSSTSSYLCPPCAKPNFSFFDLDSKP 131
             P PS R +CS C+S THSHC            SS    +LCPPCA  NF+FF+ ++  
Sbjct: 66  -PPPPSKRISCSNCTSFTHSHCAT----------SSPPFPFLCPPCADANFNFFNFEN-- 125

Query: 132 RISPKSIDRKTAVVLLCAAKIASASMGKAVIVARADAERKVREAAMARKRAREALEHVGF 191
            I+ K+ID+  A VLLCAAKIA+ SM KAV VAR +AER+VREAA+ RKRAREALEHV F
Sbjct: 126 -INKKTIDKDMATVLLCAAKIAANSMAKAVNVARTEAERRVREAAVCRKRAREALEHVLF 185

Query: 192 VLARERARRKEEGSVEVSGSGNLGMKEKERNRNLGSMVKAEN 233
           +     A+RK+  SV+VS S +LG K    N  +GS   A +
Sbjct: 186 L-----AKRKDADSVQVSASAHLG-KRVINNITIGSPQNANS 207

The following BLAST results are available for this feature:
BLAST of ClCG03G017870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYS3_CUCSA1.2e-15788.92Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560710 PE=4 SV=1[more]
A0A067JHK0_JATCU2.2e-5860.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23170 PE=4 SV=1[more]
B9RFQ8_RICCO9.6e-5454.50DNA binding protein, putative OS=Ricinus communis GN=RCOM_1436640 PE=4 SV=1[more]
A0A061F375_THECC7.6e-5158.20DNA binding protein, putative OS=Theobroma cacao GN=TCM_026837 PE=4 SV=1[more]
A0A067DPC4_CITSI3.8e-5049.37Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025319mg PE=4 SV=1[more]
BLAST of ClCG03G017870 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09520.12.5e-3743.59 LOCATED IN: chloroplast[more]
AT3G17460.13.5e-2333.33 PHD finger family protein[more]
BLAST of ClCG03G017870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099270|ref|XP_008450515.1|7.6e-16190.15PREDICTED: uncharacterized protein LOC103492096 [Cucumis melo][more]
gi|778662161|ref|XP_011659447.1|1.7e-15788.92PREDICTED: uncharacterized protein LOC105436183 [Cucumis sativus][more]
gi|1009116458|ref|XP_015874783.1|8.3e-6747.08PREDICTED: uncharacterized protein LOC107411671 [Ziziphus jujuba][more]
gi|802755152|ref|XP_012088829.1|3.2e-5860.10PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas][more]
gi|1000981027|ref|XP_015570582.1|1.4e-5354.50PREDICTED: uncharacterized protein LOC8274959 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019786Zinc_finger_PHD-type_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G017870.1ClCG03G017870.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 47..116
scor
NoneNo IPR availableunknownCoilCoilcoord: 164..184
scor
NoneNo IPR availablePANTHERPTHR34451FAMILY NOT NAMEDcoord: 6..304
score: 5.7
NoneNo IPR availablePANTHERPTHR34451:SF2GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MTO12coord: 6..304
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G017870Csa1G560710Cucumber (Chinese Long) v2cuwcgB040
ClCG03G017870MELO3C015242Melon (DHL92) v3.5.1mewcgB245
ClCG03G017870Cla005145Watermelon (97103) v1wcgwmB224
ClCG03G017870Cla97C03G068270Watermelon (97103) v2wcgwmbB186
ClCG03G017870Bhi02G001834Wax gourdwcgwgoB363
ClCG03G017870CSPI01G25630Wild cucumber (PI 183967)cpiwcgB042
ClCG03G017870Cucsa.050900Cucumber (Gy14) v1cgywcgB035
ClCG03G017870CmaCh10G011820Cucurbita maxima (Rimu)cmawcgB055
ClCG03G017870CmoCh10G012600Cucurbita moschata (Rifu)cmowcgB046
ClCG03G017870Cp4.1LG18g00010Cucurbita pepo (Zucchini)cpewcgB328
ClCG03G017870MELO3C015242.2Melon (DHL92) v3.6.1medwcgB237
ClCG03G017870CsaV3_1G038030Cucumber (Chinese Long) v3cucwcgB043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G017870Bottle gourd (USVL1VR-Ls)lsiwcgB105
ClCG03G017870Bottle gourd (USVL1VR-Ls)lsiwcgB364
ClCG03G017870Cucumber (Gy14) v2cgybwcgB038
ClCG03G017870Cucumber (Gy14) v2cgybwcgB047
ClCG03G017870Cucumber (Chinese Long) v3cucwcgB053
ClCG03G017870Watermelon (Charleston Gray)wcgwcgB125
ClCG03G017870Cucumber (Gy14) v1cgywcgB037
ClCG03G017870Cucurbita maxima (Rimu)cmawcgB114
ClCG03G017870Cucurbita moschata (Rifu)cmowcgB102
ClCG03G017870Wild cucumber (PI 183967)cpiwcgB049
ClCG03G017870Cucumber (Chinese Long) v2cuwcgB050
ClCG03G017870Cucumber (Chinese Long) v2cuwcgB135
ClCG03G017870Watermelon (97103) v1wcgwmB242
ClCG03G017870Cucurbita pepo (Zucchini)cpewcgB109
ClCG03G017870Cucurbita pepo (Zucchini)cpewcgB604