CsaV3_1G038030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G038030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DNA binding protein, putative
Location	chr1 : 23868364 .. 23870635 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAGTCATATTAAGAAAAACATGGCCATATTTACTTTTATAAAATTCAAAATAAATAATTTAGTTTTATTATTATGAGAATATTGAAAATTGTATTTTGGTTGTCTTCTCCAACAGTGAGTTGATTGCAAATTTGCAAACCCTAATTTTAATTTCTCTGCAACTTTCCCCCTCCTTCAACTTTTGAAACCCAAAACAAAACTCAAACGAAACCCTATCAATACCTTCTTCTATTCAGTATTCCCTTCTGGGATTGTTTCATTCTTCCATTCTTTTCATCTTCAATTCTTTACCTTGTTTACGGTTTTTTTTTTCTTCTTTCTATTACGTCTCTCAATGAACCACCCTCCTCTTCCTCCTCCACCTTCCACTCCAAATCCCCCTACCAAAATGCTGAAGGAGTGTGGAAATTGCGGCTCTCAAGGTCGATGGATTCTGCATCACGTTCGTATACGAGGTATTAATCGTCGCCTTTGCACTTCCTGCGTCCTTCGTCTTCATCCCAGTTCGTTTTGCCCTTCTTGCTTCCAGTTCTATGATCTTTCTGTGTCTCCTCATCCCTCCAATCGTTTCACTTGTTCTAAATGTTCTTCTATTACGCATTCTCATTGCGTTGTCAATCCGGCTTGCCCCGACCCTCAGCTTCTGTCCTCCACTACCTCCTCCTCTTATCTCTGCCCTCCCTGCGCCAAGCCCAATTTTTCATTTTTCGATTCCGACTCAAAGCCTCGAATTTCACCTAAGTCTATTGATAGGAAGACGGCTGTGGTGTTGCTCTGTGCGGCTAAGATTGCCTCTGCATCGATGGCTAAGGCAGTGATTGTGGCGCGAGCGGATGCGGAGAGGAAAGTGAGGGAGGCGGCTATGGCGAGGAAGAGAGCAAGAGAGGCTCTTGAGCATGTCGGTTTTGTTGTGGCTAGAGAAAGAGCTAGGCGTAAGGAAGAGGCTTCAGTGGAGGTTTCAGGTTCTGGGAATTTGGGAGTGAAGGAGAAAGAGAGGAATAGGACTTTGGGTCCTACGGTGAAAGCAGAGAATGCTTTTGAGATGCCTGCAGTATCAACTTTGAACACTGGTAGTGCTTTAACTCAGAGAAGGGAGAGCTTAAATGGGTTTGTGAGACAGATGTCAATGGTGAAGAATGAGGCGGCTGCTTCCATGGAGGAATCTGCAAGGCATAAAAATGTTGAGGTTGCTGAACGTTTACAGAGTAACAACAACATTGGTTTATTAAATGAGAAGGAGAAGAATGAGAATGGTGAAGTTGAGCATGTGAAAAATGATCATATTGGAGGAACTGTTAATACCACAAAATAGCCCCTTTTCATGATACAGAGCCAAGAATTGATCAAATCATGGTTTCCTTGGTCTTTTGCTAAATGATATTGTTCTAAAGTATGAAAATTCATTGAGCTACTTTTGTACTGGGTTTGACCTGGCTCTTTAGGAATTCATGTAGTGAGGATAGCACAATTGCCTGTGAGTTTTTTTTTTTTTTTAGAGATATTCCTTCTTGATATTTGGGGTGGTCTAGAGTTTATCTGAGTTCTCTTTTTAAGGGCCCTCTCCTAGCAATGGTGTAAAAAATGTAGATTAATTGAAGTTCAAATTATTCTGTGTACTTGCCACATTCTTACTTTGCATATTACTGCAACATTCGTTTAGTTTTCTGAAACCCTCTCCCAGTTTTGGTCAACCGTGTCTTCTCATTCCTGAGATTGGTGATAGTCTCGTAGAGAAAATAACTCAGAATTGTGATTGAATGAACTGAATGTGGTTTTCATTGTCTCAGAACTGTGATAATATATTGTTGGAATAGTGCTTTGAGTTATCCATTTTTTTCATTCTTTTCTAGCAGGGTTTATTTTACTTTGCATTATGCTGAGGGTATATTTTTTGTTAATCAAAGCCATAATTTGATATTTGGCTATATGTGGAAAAAGTGTTCATAAATACTTCAGGTACTCAAAAAGCATTTCTTTTGATATTAAGAAGGAAAGGAGGAGGCAAAATACTCTTCTTGAAGGAATATGCCGTGATCAAGACCACGTTTCCAATAAAAAAAATTAGTATTCTTTGAAGAACTTATGTGTGAAATACCTTATGAGTTGACATGTGAAGAATTTATTTTTCTTTTAGATTCAAATGGTAAAGTAGATAAAATGTTTGCGTTGTCTTCTGCAATTTTGTTTAATTCCATTCCATTTTGGATATAGTTGTTAACAGATGGTGGGAGCTGTATGGGCAGATATAGAAAAGTTTGATAAATCTCAAG

mRNA sequence

ATGAACCACCCTCCTCTTCCTCCTCCACCTTCCACTCCAAATCCCCCTACCAAAATGCTGAAGGAGTGTGGAAATTGCGGCTCTCAAGGTCGATGGATTCTGCATCACGTTCGTATACGAGGTATTAATCGTCGCCTTTGCACTTCCTGCGTCCTTCGTCTTCATCCCAGTTCGTTTTGCCCTTCTTGCTTCCAGTTCTATGATCTTTCTGTGTCTCCTCATCCCTCCAATCGTTTCACTTGTTCTAAATGTTCTTCTATTACGCATTCTCATTGCGTTGTCAATCCGGCTTGCCCCGACCCTCAGCTTCTGTCCTCCACTACCTCCTCCTCTTATCTCTGCCCTCCCTGCGCCAAGCCCAATTTTTCATTTTTCGATTCCGACTCAAAGCCTCGAATTTCACCTAAGTCTATTGATAGGAAGACGGCTGTGGTGTTGCTCTGTGCGGCTAAGATTGCCTCTGCATCGATGGCTAAGGCAGTGATTGTGGCGCGAGCGGATGCGGAGAGGAAAGTGAGGGAGGCGGCTATGGCGAGGAAGAGAGCAAGAGAGGCTCTTGAGCATGTCGGTTTTGTTGTGGCTAGAGAAAGAGCTAGGCGTAAGGAAGAGGCTTCAGTGGAGGTTTCAGGTTCTGGGAATTTGGGAGTGAAGGAGAAAGAGAGGAATAGGACTTTGGGTCCTACGGTGAAAGCAGAGAATGCTTTTGAGATGCCTGCAGTATCAACTTTGAACACTGGTAGTGCTTTAACTCAGAGAAGGGAGAGCTTAAATGGGTTTGTGAGACAGATGTCAATGGTGAAGAATGAGGCGGCTGCTTCCATGGAGGAATCTGCAAGGCATAAAAATGTTGAGGTTGCTGAACGTTTACAGAGTAACAACAACATTGGTTTATTAAATGAGAAGGAGAAGAATGAGAATGGTGAAGTTGAGCATGTGAAAAATGATCATATTGGAGGAACTGTTAATACCACAAAATAG

Coding sequence (CDS)

ATGAACCACCCTCCTCTTCCTCCTCCACCTTCCACTCCAAATCCCCCTACCAAAATGCTGAAGGAGTGTGGAAATTGCGGCTCTCAAGGTCGATGGATTCTGCATCACGTTCGTATACGAGGTATTAATCGTCGCCTTTGCACTTCCTGCGTCCTTCGTCTTCATCCCAGTTCGTTTTGCCCTTCTTGCTTCCAGTTCTATGATCTTTCTGTGTCTCCTCATCCCTCCAATCGTTTCACTTGTTCTAAATGTTCTTCTATTACGCATTCTCATTGCGTTGTCAATCCGGCTTGCCCCGACCCTCAGCTTCTGTCCTCCACTACCTCCTCCTCTTATCTCTGCCCTCCCTGCGCCAAGCCCAATTTTTCATTTTTCGATTCCGACTCAAAGCCTCGAATTTCACCTAAGTCTATTGATAGGAAGACGGCTGTGGTGTTGCTCTGTGCGGCTAAGATTGCCTCTGCATCGATGGCTAAGGCAGTGATTGTGGCGCGAGCGGATGCGGAGAGGAAAGTGAGGGAGGCGGCTATGGCGAGGAAGAGAGCAAGAGAGGCTCTTGAGCATGTCGGTTTTGTTGTGGCTAGAGAAAGAGCTAGGCGTAAGGAAGAGGCTTCAGTGGAGGTTTCAGGTTCTGGGAATTTGGGAGTGAAGGAGAAAGAGAGGAATAGGACTTTGGGTCCTACGGTGAAAGCAGAGAATGCTTTTGAGATGCCTGCAGTATCAACTTTGAACACTGGTAGTGCTTTAACTCAGAGAAGGGAGAGCTTAAATGGGTTTGTGAGACAGATGTCAATGGTGAAGAATGAGGCGGCTGCTTCCATGGAGGAATCTGCAAGGCATAAAAATGTTGAGGTTGCTGAACGTTTACAGAGTAACAACAACATTGGTTTATTAAATGAGAAGGAGAAGAATGAGAATGGTGAAGTTGAGCATGTGAAAAATGATCATATTGGAGGAACTGTTAATACCACAAAATAG

Protein sequence

MNHPPLPPPPSTPNPPTKMLKECGNCGSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKPNFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAVSTLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNEKEKNENGEVEHVKNDHIGGTVNTTK

Homology

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BLAST of CsaV3_1G038030 vs. NCBI nr
Match: XP_011659447.1 (PREDICTED: uncharacterized protein LOC105436183 [Cucumis sativus] >KGN65987.1 hypothetical protein Csa_1G560710 [Cucumis sativus])

HSP 1 Score: 566.6 bits (1459), Expect = 5.4e-158
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0


Query: 1   MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60
           MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC
Sbjct: 1   MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60

Query: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120
           PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP
Sbjct: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120

Query: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180
           NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK
Sbjct: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180

Query: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240
           RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV
Sbjct: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240

Query: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300
           STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE
Sbjct: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300

Query: 301 KEKNENGEVEHVKNDHIGGTVNTTK 326
           KEKNENGEVEHVKNDHIGGTVNTTK
Sbjct: 301 KEKNENGEVEHVKNDHIGGTVNTTK 325

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BLAST of CsaV3_1G038030 vs. NCBI nr
Match: XP_008450515.1 (PREDICTED: uncharacterized protein LOC103492096 [Cucumis melo])

HSP 1 Score: 486.1 bits (1250), Expect = 9.3e-134
Identity = 281/325 (86.46%), Postives = 285/325 (87.69%), Query Frame = 0


Query: 1   MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60
           MNHP L   XXXXXXXXXXXXXXXXXX   RWILHHVRIRGINRRLCTSCVLRLHPSSFC
Sbjct: 1   MNHPHLPPPXXXXXXXXXXXXXXXXXXSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60

Query: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120
           PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSST+SSSYLCPPCAKP
Sbjct: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTSSSSYLCPPCAKP 120

Query: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180
           NFSFFD DSKPRISPKSIDRKTAVVLLCAAKIAS SM KA IVARADAERKVREAAMARK
Sbjct: 121 NFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASTSMGKAAIVARADAERKVREAAMARK 180

Query: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240
           RAREALEHVGFV+ARE                            LGPTVKAENAFE+PAV
Sbjct: 181 RAREALEHVGFVLAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPTVKAENAFEIPAV 240

Query: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300
           STLNTG+ALTQRRESLNGFVRQMSMVKNE AASMEESARHKNVEVAERLQSNNNIGLLNE
Sbjct: 241 STLNTGTALTQRRESLNGFVRQMSMVKNEVAASMEESARHKNVEVAERLQSNNNIGLLNE 300

Query: 301 KEKNENGEVEHVKNDHIGGTVNTTK 326
           KEKNENGEVEHVKNDHIGGTVNTTK
Sbjct: 301 KEKNENGEVEHVKNDHIGGTVNTTK 325

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BLAST of CsaV3_1G038030 vs. NCBI nr
Match: XP_022155464.1 (uncharacterized protein LOC111022599 [Momordica charantia])

HSP 1 Score: 364.8 bits (935), Expect = 3.1e-97
Identity = 213/305 (69.84%), Postives = 232/305 (76.07%), Query Frame = 0


Query: 31  RWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPH--PSNRFTCSKCSSIT 90
           RW+LHHVR+RG+NRRLCTSCVLRLHP+SFCPSCFQFYD S SPH  PSNRFTC KCSSI+
Sbjct: 40  RWMLHHVRLRGVNRRLCTSCVLRLHPTSFCPSCFQFYDPSASPHPQPSNRFTCVKCSSIS 99

Query: 91  HSHCVVNPACPDPQLLSSTTSSSYLCPPCAKPNFSFFDSDSKPRISPKSIDRKTAVVLLC 150
           HSHCV++P+  DP  LSS +SSSYLCPPCAKPNFSFFD DSKPRIS KSIDRK AVVLLC
Sbjct: 100 HSHCVLSPSSSDPHPLSS-SSSSYLCPPCAKPNFSFFDLDSKPRISDKSIDRKMAVVLLC 159

Query: 151 AAKIASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARERARRKEEASVEV 210
           AAKIASASM KAVIVARADAERKVREAA+ARKRAREALEHVGFVVARE            
Sbjct: 160 AAKIASASMGKAVIVARADAERKVREAAIARKRAREALEHVGFVVAREXXXXXXXXXXXX 219

Query: 211 SGSGNLGVKEKERNRTLGPTVKAENAFEMPAVSTLNTGSALTQRRESLNGFVRQMSMVKN 270
                            G  VK EN+ E  AV+  NT SALT RRESLNGFVRQMSMVKN
Sbjct: 220 XXXXXXXXXXXXXXXXXGSMVKMENSCEGSAVANSNTSSALTHRRESLNGFVRQMSMVKN 279

Query: 271 EAAASMEESARHKNVEVAERLQSNNNIGLLNEKEK--------NENGEVEHVKNDHIGGT 326
           + AAS+EE+ R KNVE A+RLQS+NN   LNEKEK        +ENGEV+ V ND IGG 
Sbjct: 280 DVAASLEEALRQKNVE-ADRLQSSNN-NTLNEKEKSGNFGDSGHENGEVKRVHNDQIGGN 339

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BLAST of CsaV3_1G038030 vs. NCBI nr
Match: XP_022961460.1 (uncharacterized protein LOC111462036, partial [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 5.0e-55
Identity = 133/180 (73.89%), Postives = 150/180 (83.33%), Query Frame = 0


Query: 137 SIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARE 196
           S  RKTAVVLLCAAKIASASM KAVIVARADAERKVRE A+ARKRAREALEHVGF++ARE
Sbjct: 50  SFTRKTAVVLLCAAKIASASMGKAVIVARADAERKVREVAVARKRAREALEHVGFLLARE 109

Query: 197 RARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAVSTLNTGSALTQRRESL 256
           RARRKEEAS+EVSGSGN+  K+KERNR LG  VK EN+ E PAV TLNTG+ LTQRRESL
Sbjct: 110 RARRKEEASMEVSGSGNMETKDKERNRNLGSMVKTENSLETPAVPTLNTGTTLTQRRESL 169

Query: 257 NGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNEKEKNENGEVEHVKNDH 316
           NGFVRQMSMVKNEAAAS++E+A       A+RL+SNNNI         +NG+VE+V+NDH
Sbjct: 170 NGFVRQMSMVKNEAAASVQETAE------ADRLRSNNNIA--------DNGDVENVQNDH 215

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BLAST of CsaV3_1G038030 vs. NCBI nr
Match: XP_021636506.1 (uncharacterized protein LOC110632521 [Hevea brasiliensis])

HSP 1 Score: 214.9 bits (546), Expect = 4.0e-52
Identity = 123/189 (65.08%), Postives = 143/189 (75.66%), Query Frame = 0


Query: 32  WILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCSKCSSITHSH 91
           W+LHHVR+RGI RRLCTSCVLRLHPSSFCPSCF FYD S  P PS R +CS CSS THSH
Sbjct: 35  WLLHHVRLRGIYRRLCTSCVLRLHPSSFCPSCFTFYD-SSPPPPSKRLSCSNCSSFTHSH 94

Query: 92  CVVNPACPDPQLLSSTTSSSYLCPPCAKPNFSFFDSDSKPRISPKSIDRKTAVVLLCAAK 151
           CV     P P      +S  +LCPPCA PNFSFF  D   + + ++ID+K A VLLCAA+
Sbjct: 95  CVP----PHP-----PSSLPFLCPPCADPNFSFFHLD---KTNNRTIDKKMATVLLCAAR 154

Query: 152 IASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARERARRKEEASVEVSGS 211
           IA++SMAKAVIVARA+AER+VREAA+ RKRAREALEHV  V     A+RK+  SVEVSGS
Sbjct: 155 IAASSMAKAVIVARAEAERRVREAAVCRKRAREALEHVALV-----AKRKDVESVEVSGS 205

Query: 212 GNLGVKEKE 221
           GN G +E+E
Sbjct: 215 GNFGKRERE 205

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BLAST of CsaV3_1G038030 vs. TAIR10
Match: AT1G09520.1 (LOCATED IN: chloroplast)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-28
Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 32  WILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCS--KCSSITH 91
           W++H VR+R   R  CT C+LR HP+SFCP CF  YD   SP    R +CS   C S+TH
Sbjct: 35  WVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYD--SSPPSFRRVSCSIKGCHSLTH 94

Query: 92  SHCVVNPACPDPQLLSSTTSSSYLCPPCAKPN-FSFFDSDSKPRI---SPKSIDRKTAVV 151
            HC               +  SYLCPPC  PN FSFF    +P +     + +D+  +  
Sbjct: 95  IHCA-----------GDESHLSYLCPPCRDPNSFSFF----RPIVDENGSRFVDKALSEA 154

Query: 152 LLCAAKIASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARERAR 200
            LCAAKIA++SM KAV+ A+ + +R+ +EAA+A+KRAREALE V  + A+E+AR
Sbjct: 155 FLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRAREALEQVVMLDAKEKAR 191

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BLAST of CsaV3_1G038030 vs. TAIR10
Match: AT3G17460.1 (PHD finger family protein)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-12
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 0


Query: 34  LHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCSKCSSITHSHC- 93
           +H V   G  RRLCT C+L+ +   FC  CF  +D +V P    R  C  C S TH  C 
Sbjct: 21  IHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDNAVPPQA--RIICVNCPSSTHLSCS 80

Query: 94  --VVNPACPDPQLLSSTTSSSYLCPPCAKPNFSFFD----SDSKPRISPKSIDRKTAVVL 153
                                + C PC+ PNF+FF     ++  P  +P  +  K+A+ L
Sbjct: 81  TXXXXXXXXXXXXXXXXXXXXFTCQPCSNPNFTFFPKSRVNEDVPDETP--LTPKSAMAL 140

Query: 154 LCAAKIASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARE---RARRKEE 204
           + A  I+ A+M KAV + + +A +K+  A  A+ RA+ AL ++  +V R+     +RKE+
Sbjct: 141 VAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGALTNLQDIVIRQSKVTGKRKED 196

[Close]

BLAST of CsaV3_1G038030 vs. TrEMBL
Match: tr|A0A0A0LYS3|A0A0A0LYS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560710 PE=4 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 3.6e-158
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0


Query: 1   MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60
           MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC
Sbjct: 1   MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60

Query: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120
           PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP
Sbjct: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120

Query: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180
           NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK
Sbjct: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180

Query: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240
           RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV
Sbjct: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240

Query: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300
           STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE
Sbjct: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300

Query: 301 KEKNENGEVEHVKNDHIGGTVNTTK 326
           KEKNENGEVEHVKNDHIGGTVNTTK
Sbjct: 301 KEKNENGEVEHVKNDHIGGTVNTTK 325

[Close]

BLAST of CsaV3_1G038030 vs. TrEMBL
Match: tr|A0A1S3BQ20|A0A1S3BQ20_CUCME (uncharacterized protein LOC103492096 OS=Cucumis melo OX=3656 GN=LOC103492096 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 6.1e-134
Identity = 281/325 (86.46%), Postives = 285/325 (87.69%), Query Frame = 0


Query: 1   MNHPPLXXXXXXXXXXXXXXXXXXXXXXXXRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60
           MNHP L   XXXXXXXXXXXXXXXXXX   RWILHHVRIRGINRRLCTSCVLRLHPSSFC
Sbjct: 1   MNHPHLPPPXXXXXXXXXXXXXXXXXXSQGRWILHHVRIRGINRRLCTSCVLRLHPSSFC 60

Query: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTTSSSYLCPPCAKP 120
           PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSST+SSSYLCPPCAKP
Sbjct: 61  PSCFQFYDLSVSPHPSNRFTCSKCSSITHSHCVVNPACPDPQLLSSTSSSSYLCPPCAKP 120

Query: 121 NFSFFDSDSKPRISPKSIDRKTAVVLLCAAKIASASMAKAVIVARADAERKVREAAMARK 180
           NFSFFD DSKPRISPKSIDRKTAVVLLCAAKIAS SM KA IVARADAERKVREAAMARK
Sbjct: 121 NFSFFDLDSKPRISPKSIDRKTAVVLLCAAKIASTSMGKAAIVARADAERKVREAAMARK 180

Query: 181 RAREALEHVGFVVARERARRKEEASVEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAV 240
           RAREALEHVGFV+ARE                            LGPTVKAENAFE+PAV
Sbjct: 181 RAREALEHVGFVLAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGPTVKAENAFEIPAV 240

Query: 241 STLNTGSALTQRRESLNGFVRQMSMVKNEAAASMEESARHKNVEVAERLQSNNNIGLLNE 300
           STLNTG+ALTQRRESLNGFVRQMSMVKNE AASMEESARHKNVEVAERLQSNNNIGLLNE
Sbjct: 241 STLNTGTALTQRRESLNGFVRQMSMVKNEVAASMEESARHKNVEVAERLQSNNNIGLLNE 300

Query: 301 KEKNENGEVEHVKNDHIGGTVNTTK 326
           KEKNENGEVEHVKNDHIGGTVNTTK
Sbjct: 301 KEKNENGEVEHVKNDHIGGTVNTTK 325

[Close]

BLAST of CsaV3_1G038030 vs. TrEMBL
Match: tr|A0A067JHK0|A0A067JHK0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23170 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.2e-50
Identity = 117/189 (61.90%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 32  WILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCSKCSSITHSH 91
           W+LHHVR+RGI RRLCT CVLRLHP+SFCP CF FYD +  P PS R +CS CSS THSH
Sbjct: 35  WLLHHVRLRGIYRRLCTCCVLRLHPASFCPLCFTFYD-TTPPPPSKRLSCSNCSSFTHSH 94

Query: 92  CVVNPACPDPQLLSSTTSSSYLCPPCAKPNFSFFDSDSKPRISPKSIDRKTAVVLLCAAK 151
           C            S + S ++LCPPCA PNFSFF  D   + + ++ID+K A VLLCAAK
Sbjct: 95  CAP----------SQSPSFAFLCPPCADPNFSFFHLD---KTNNRTIDKKMATVLLCAAK 154

Query: 152 IASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARERARRKEEASVEVSGS 211
           IA+ SMAKAV+VARA+AER+VREAA+ RKRAREALE+V  V     A+RKE  SVEVSGS
Sbjct: 155 IAACSMAKAVVVARAEAERRVREAAVCRKRAREALENVALV-----AKRKEVESVEVSGS 204

Query: 212 GNLGVKEKE 221
           GNLG +E++
Sbjct: 215 GNLGKRERD 204

[Close]

BLAST of CsaV3_1G038030 vs. TrEMBL
Match: tr|A0A2C9VGH8|A0A2C9VGH8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G107700 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.2e-50
Identity = 120/188 (63.83%), Postives = 141/188 (75.00%), Query Frame = 0


Query: 33  ILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVSPHPSNRFTCSKCSSITHSHC 92
           +LHHVR+RGI RRLCTSC+LRLHPSSFCPSCF FYD S  P PS R +CS C S+THSHC
Sbjct: 36  LLHHVRLRGIYRRLCTSCILRLHPSSFCPSCFTFYD-SSPPPPSKRQSCSTCPSLTHSHC 95

Query: 93  V-VNPACPDPQLLSSTTSSSYLCPPCAKPNFSFFDSDSKPRISPKSIDRKTAVVLLCAAK 152
           V  +P  P P          +LCPPCA PNFSFF  D   + + +SID+K A VLLCAAK
Sbjct: 96  VPSHPPSPFP----------FLCPPCADPNFSFFHLD---KTNNRSIDKKMATVLLCAAK 155

Query: 153 IASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVARERARRKEEASVEVSGS 212
           IA++SMAKAVIVAR +AER+V+EAA+ RK+AREALEHV  V     A+RKE  SVEVSGS
Sbjct: 156 IAASSMAKAVIVARTEAERRVKEAAVCRKKAREALEHVALV-----AKRKEVESVEVSGS 204

Query: 213 GNLGVKEK 220
           GNLG +E+
Sbjct: 216 GNLGKRER 204

[Close]

BLAST of CsaV3_1G038030 vs. TrEMBL
Match: tr|A0A2P5A8B4|A0A2P5A8B4_9ROSA (Zinc finger, FYVE/PHD-type OS=Trema orientalis OX=63057 GN=TorRG33x02_355940 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.6e-49
Identity = 139/289 (48.10%), Postives = 180/289 (62.28%), Query Frame = 0


Query: 31  RWILHHVRIRGINRRLCTSCVLRLHPSSFCPSCFQFYDLSVS-PHPSNRFTCSKCSSITH 90
           RW+LHHVRIRGI+RRLCTSCVLRLHPSSFCP+CFQFYD + + P  S R TCSKCSS TH
Sbjct: 39  RWVLHHVRIRGIHRRLCTSCVLRLHPSSFCPTCFQFYDSNNNVPPSSKRLTCSKCSSFTH 98

Query: 91  SHCVVNPACPDPQLLSSTTSSSYLCPPCAKPNFSFFDSDSKPRISPKSIDRKTAVVLLCA 150
           SHC    A              YLCPPCA P+F FFD DS P    ++ID++ A++LLCA
Sbjct: 99  SHC----AXXXXXXXXXXXXXXYLCPPCASPSFVFFDIDSDPN---RAIDKRLALILLCA 158

Query: 151 AKIASASMAKAVIVARADAERKVREAAMARKRAREALEHVGFVVA--RERARRKE--EAS 210
           AKI++ASM+KAVI+AR +AER+VREAA+ARKRAREAL+++  +V+   ++A RK+  E S
Sbjct: 159 AKISAASMSKAVILARGEAERRVREAALARKRAREALDNLAVLVSGRGDKAVRKDAAEGS 218

Query: 211 VEVSGSGNLGVKEKERNRTLGPTVKAENAFEMPAVSTLNTGSALTQRRESLNGFVRQMSM 270
            EVSGSGN+G ++KE+                   S L   ++  +     +G  RQ SM
Sbjct: 219 AEVSGSGNVGSRQKEK-------------------SPLGRQNSQGKMFNGFSGHPRQSSM 278

Query: 271 VKNEAAASMEESARHKNV---EVAERLQSNNNI------GLLNEKEKNE 306
           V +    +   +  HK V        LQSN N+      G ++EK K E
Sbjct: 279 V-SPLGKNDNGNGEHKPVIDHHHRPGLQSNGNLYEKDKSGAMDEKVKLE 300

The following BLAST results are available for this feature:

BLAST of CsaV3_1G038030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659447.1	5.4e-158	100.00	PREDICTED: uncharacterized protein LOC105436183 [Cucumis sativus] >KGN65987.1 hy...	[more]
XP_008450515.1	9.3e-134	86.46	PREDICTED: uncharacterized protein LOC103492096 [Cucumis melo]	[more]
XP_022155464.1	3.1e-97	69.84	uncharacterized protein LOC111022599 [Momordica charantia]	[more]
XP_022961460.1	5.0e-55	73.89	uncharacterized protein LOC111462036, partial [Cucurbita moschata]	[more]
XP_021636506.1	4.0e-52	65.08	uncharacterized protein LOC110632521 [Hevea brasiliensis]	[more]

BLAST of CsaV3_1G038030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09520.1	2.9e-28	44.83	LOCATED IN: chloroplast	[more]
AT3G17460.1	6.4e-12	31.67	PHD finger family protein	[more]

BLAST of CsaV3_1G038030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYS3\|A0A0A0LYS3_CUCSA	3.6e-158	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560710 PE=4 SV=1	[more]
tr\|A0A1S3BQ20\|A0A1S3BQ20_CUCME	6.1e-134	86.46	uncharacterized protein LOC103492096 OS=Cucumis melo OX=3656 GN=LOC103492096 PE=...	[more]
tr\|A0A067JHK0\|A0A067JHK0_JATCU	3.2e-50	61.90	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23170 PE=4 SV=1	[more]
tr\|A0A2C9VGH8\|A0A2C9VGH8_MANES	4.2e-50	63.83	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G107700 PE=4 SV=...	[more]
tr\|A0A2P5A8B4\|A0A2P5A8B4_9ROSA	3.6e-49	48.10	Zinc finger, FYVE/PHD-type OS=Trema orientalis OX=63057 GN=TorRG33x02_355940 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019786	Zinc_finger_PHD-type_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G038030.1	CsaV3_1G038030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..185
None	No IPR available	PANTHER	PTHR34451	FAMILY NOT NAMED	coord: 15..283
None	No IPR available	PANTHER	PTHR34451:SF2	PHD FINGER FAMILY PROTEIN	coord: 15..283
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 47..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G038030	CSPI01G25630	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G038030	Cucsa.050900	Cucumber (Gy14) v1	cgycucB035
CsaV3_1G038030	CmaCh10G011820	Cucurbita maxima (Rimu)	cmacucB0062
CsaV3_1G038030	CmoCh10G012600	Cucurbita moschata (Rifu)	cmocucB0048
CsaV3_1G038030	Cp4.1LG18g00010	Cucurbita pepo (Zucchini)	cpecucB0446
CsaV3_1G038030	Cla005145	Watermelon (97103) v1	cucwmB018
CsaV3_1G038030	MELO3C015242	Melon (DHL92) v3.5.1	cucmeB059
CsaV3_1G038030	ClCG03G017870	Watermelon (Charleston Gray)	cucwcgB043
CsaV3_1G038030	MELO3C015242.2	Melon (DHL92) v3.6.1	cucmedB056
CsaV3_1G038030	Cla97C03G068270	Watermelon (97103) v2	cucwmbB035
CsaV3_1G038030	Bhi02G001834	Wax gourd	cucwgoB092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G038030	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G038030	Cucurbita maxima (Rimu)	cmacucB0120
CsaV3_1G038030	Cucurbita moschata (Rifu)	cmocucB0109
CsaV3_1G038030	Cucurbita pepo (Zucchini)	cpecucB0821
CsaV3_1G038030	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G038030	Bottle gourd (USVL1VR-Ls)	cuclsiB086