ClCG03G004370 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G004370
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	SLG-Sc and SLA-Sc genes and Melmoth retrotransposon sequence
Location	CG_Chr03 : 4766396 .. 4766974 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCGGATACAAAGGAAGAAAGTTATTCTCAAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTACATCTTACTTCACAAAGCTCGAGGCATTATGGAATGAACTCGCCACCTTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGTAACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAGGGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCCAAAATGTGCAACCAAATCCTTATTACCCCTCCATTTCCAACGGTGGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGCTGCATTAGAAACTGTTGCGGAAAAAGTAATTCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAACAATGGTGATAACTATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTCACCAGCACCAATTTGATCAAAATCTAGTTACAAGCTTCCCCATTGACCCATTGCTAACAGACCTTGGATCTCCTGTGCGATGCTAA

mRNA sequence

ATGGGATCGGATACAAAGGAAGAAAGTTATTCTCAAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTACATCTTACTTCACAAAGCTCGAGGCATTATGGAATGAACTCGCCACCTTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGTAACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAGGGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCCAAAATGTGCAACCAAATCCTTATTACCCCTCCATTTCCAACGGTGGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGCTGCATTAGAAACTGTTGCGGAAAAAGTAATTCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAACAATGGTGATAACTATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTCACCAGCACCAATTTGATCAAAATCTAGTTACAAGCTTCCCCATTGACCCATTGCTAACAGACCTTGGATCTCCTGTGCGATGCTAA

Coding sequence (CDS)

ATGGGATCGGATACAAAGGAAGAAAGTTATTCTCAAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTACATCTTACTTCACAAAGCTCGAGGCATTATGGAATGAACTCGCCACCTTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGTAACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAGGGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCCAAAATGTGCAACCAAATCCTTATTACCCCTCCATTTCCAACGGTGGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGCTGCATTAGAAACTGTTGCGGAAAAAGTAATTCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAACAATGGTGATAACTATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTCACCAGCACCAATTTGATCAAAATCTAGTTACAAGCTTCCCCATTGACCCATTGCTAACAGACCTTGGATCTCCTGTGCGATGCTAA

Protein sequence

MGSDTKEESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRRELLAALETVAEKVIQNNWLDLQNQNAHSNNGDNYDGVQGLVDSNNLHQHQFDQNLVTSFPIDPLLTDLGSPVRC

Homology

[Close]

BLAST of ClCG03G004370 vs. TrEMBL
Match: A0A0A0LU31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-32
Identity = 80/154 (51.95%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ K+E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++ T+++D  Q
Sbjct: 211 MGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQ 270

Query: 61  -CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKR 120
             S  G     SE  ER++VMQF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKR
Sbjct: 271 GYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKR 330

Query: 121 RELLAALETVAEKVIQNNWLDLQNQNAHSNNGDN 152
           REL  AL  +A +VIQ+++     Q   SNNGDN
Sbjct: 331 RELFVALGIMAAQVIQSSY-----QYGSSNNGDN 359

[Close]

BLAST of ClCG03G004370 vs. TrEMBL
Match: A0A0A0LRE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ ++E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++  ++++   
Sbjct: 201 MGSNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSE--- 260

Query: 61  CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRR 120
            S  G+    SE  ER++V+QF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKRR
Sbjct: 261 -SVEGIAF-WSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRR 320

Query: 121 ELLAALETVAEKVIQNNWLDLQNQNAHSNNGDNYD-GVQGLVDSN 163
           EL  AL TVA +VIQ+++     QN  SNNGDN + G+   +D++
Sbjct: 321 ELFVALGTVAAQVIQSSY-----QNGSSNNGDNKNLGIDQEIDTS 355

[Close]

BLAST of ClCG03G004370 vs. TrEMBL
Match: A0A0A0LRX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059720 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 61/123 (49.59%), Postives = 86/123 (69.92%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDS--RMFQIYKEIASHRQENSSITSYFTKLEALWNELA--TFNTDL 60
           + SDT  E ++  ++S   + +IY+ IASHR+ N+SI SYF  L+ALWNE A  + N + 
Sbjct: 106 VSSDTIIEQHNSESNSPTMLLKIYELIASHRKGNTSIKSYFRNLKALWNEAAASSINLNS 165

Query: 61  PQCSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEK 120
           PQ S     E+ SE+MERE++MQFL+GLNDSYS +C+QIL   P PTV++AY  I+ E+K
Sbjct: 166 PQSSSNNAIEERSEFMEREKLMQFLLGLNDSYSLLCSQILAVRPSPTVDQAYSLIVGEQK 225

[Close]

BLAST of ClCG03G004370 vs. TrEMBL
Match: A5BC87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 55/110 (50.00%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           E +SQ NDSR++QI ++I  HRQ   SI+ Y+TKL+A W+EL++++  L  CSCGG+ EK
Sbjct: 115 ERFSQGNDSRIYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVL-SCSCGGL-EK 174

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKR 118
           L E  E+ERVMQFL+GLNDSY+ +  QIL+  P P   + Y  ++++EK+
Sbjct: 175 LKEMDEKERVMQFLMGLNDSYAAIRGQILLMQPLPDTRRVYSLVLQQEKQ 222

[Close]

BLAST of ClCG03G004370 vs. TrEMBL
Match: A5BCQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-22
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 7   EESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTE 66
           E  + Q NDSR++QI ++I  HRQ   SI+ Y+TKL+A W+EL++++  L  CSCGG+ E
Sbjct: 152 ENVFRQGNDSRIYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVL-SCSCGGL-E 211

Query: 67  KLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           KL E  E+ERVMQFL+GLNDSY+ +  QIL+  P P   + Y  ++++EK+ E+
Sbjct: 212 KLKERDEKERVMQFLMGLNDSYAAIRGQILLMHPLPDTRRVYSLVLQQEKQVEV 263

[Close]

BLAST of ClCG03G004370 vs. NCBI nr
Match: gi|700209388|gb|KGN64484.1| (hypothetical protein Csa_1G058670 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 9.0e-32
Identity = 80/154 (51.95%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ K+E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++ T+++D  Q
Sbjct: 211 MGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQ 270

Query: 61  -CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKR 120
             S  G     SE  ER++VMQF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKR
Sbjct: 271 GYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKR 330

Query: 121 RELLAALETVAEKVIQNNWLDLQNQNAHSNNGDN 152
           REL  AL  +A +VIQ+++     Q   SNNGDN
Sbjct: 331 RELFVALGIMAAQVIQSSY-----QYGSSNNGDN 359

[Close]

BLAST of ClCG03G004370 vs. NCBI nr
Match: gi|778658332|ref|XP_011652531.1| (PREDICTED: protein ENL-like [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ ++E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++  ++++   
Sbjct: 201 MGSNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSE--- 260

Query: 61  CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRR 120
            S  G+    SE  ER++V+QF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKRR
Sbjct: 261 -SVEGIAF-WSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRR 320

Query: 121 ELLAALETVAEKVIQNNWLDLQNQNAHSNNGDNYD-GVQGLVDSN 163
           EL  AL TVA +VIQ+++     QN  SNNGDN + G+   +D++
Sbjct: 321 ELFVALGTVAAQVIQSSY-----QNGSSNNGDNKNLGIDQEIDTS 355

[Close]

BLAST of ClCG03G004370 vs. NCBI nr
Match: gi|645280959|ref|XP_008245416.1| (PREDICTED: uncharacterized protein LOC103343532 [Prunus mume])

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 59/113 (52.21%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           + +SQ NDSR++QI +EI  HRQE  S++ Y+TKL+ALW+ELA++N D+P C+CGG+ +K
Sbjct: 126 DRFSQGNDSRIYQIKREIVEHRQEQQSVSIYYTKLKALWDELASYN-DIPTCTCGGL-KK 185

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           +S+  E+ERVMQFL+GLNDSY+ +  QIL+  P P   KAY  + ++EK+ E+
Sbjct: 186 VSDRDEKERVMQFLMGLNDSYAAVRGQILLMQPLPDTRKAYSLVHQQEKQVEV 236

[Close]

BLAST of ClCG03G004370 vs. NCBI nr
Match: gi|658030034|ref|XP_008350470.1| (PREDICTED: uncharacterized protein LOC103413804 [Malus domestica])

HSP 1 Score: 122.5 bits (306), Expect = 8.2e-25
Identity = 57/113 (50.44%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           + +SQ NDSR++QI +EI  HRQE  SI+ Y+TKL+ALW+ELA++N + P C+CGG+ +K
Sbjct: 123 DRFSQGNDSRIYQIKREIVEHRQEQQSISVYYTKLKALWDELASYN-ETPTCTCGGL-KK 182

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           +++  E+ERVMQFL+GLNDSY+ +  QIL+  P P   +AY  ++++EK+ E+
Sbjct: 183 INDRDEKERVMQFLMGLNDSYAAVRGQILLMQPLPDTRRAYSLVLQQEKQVEV 233

[Close]

BLAST of ClCG03G004370 vs. NCBI nr
Match: gi|645280696|ref|XP_008245294.1| (PREDICTED: uncharacterized protein LOC103343416 [Prunus mume])

HSP 1 Score: 122.5 bits (306), Expect = 8.2e-25
Identity = 58/113 (51.33%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           + +SQ NDSR++QI +EI  HRQE  S++ Y+TKL+ALW+ELA++N ++P C+CGG+ +K
Sbjct: 126 DRFSQGNDSRIYQIKREIVEHRQEQQSVSIYYTKLKALWDELASYN-EIPTCTCGGL-KK 185

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           +S   E+ERVMQFL+GLNDSY+ +  QIL+  P P   KAY  + ++EK+ E+
Sbjct: 186 VSNRDEKERVMQFLMGLNDSYAAVRGQILLMQPLPDTRKAYSLVHQQEKQVEV 236

The following BLAST results are available for this feature:

BLAST of ClCG03G004370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU31_CUCSA	6.3e-32	51.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1	[more]
A0A0A0LRE6_CUCSA	1.2e-30	48.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1	[more]
A0A0A0LRX9_CUCSA	4.1e-23	49.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059720 PE=4 SV=1	[more]
A5BC87_VITVI	1.5e-22	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1	[more]
A5BCQ9_VITVI	5.9e-22	48.25	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1	[more]

BLAST of ClCG03G004370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209388\|gb\|KGN64484.1\|	9.0e-32	51.95	hypothetical protein Csa_1G058670 [Cucumis sativus]	[more]
gi\|778658332\|ref\|XP_011652531.1\|	1.7e-30	48.48	PREDICTED: protein ENL-like [Cucumis sativus]	[more]
gi\|645280959\|ref\|XP_008245416.1\|	1.6e-25	52.21	PREDICTED: uncharacterized protein LOC103343532 [Prunus mume]	[more]
gi\|658030034\|ref\|XP_008350470.1\|	8.2e-25	50.44	PREDICTED: uncharacterized protein LOC103413804 [Malus domestica]	[more]
gi\|645280696\|ref\|XP_008245294.1\|	8.2e-25	51.33	PREDICTED: uncharacterized protein LOC103343416 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G004370.1	ClCG03G004370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 12..127 score: 8.3
None	No IPR available	PANTHER	PTHR34222:SF2	SUBFAMILY NOT NAMED	coord: 12..127 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G004370	MELO3C002435	Melon (DHL92) v3.5.1	mewcgB151
ClCG03G004370	Cla97C03G055550	Watermelon (97103) v2	wcgwmbB186
ClCG03G004370	Bhi08G001474	Wax gourd	wcgwgoB343
ClCG03G004370	CSPI01G10310	Wild cucumber (PI 183967)	cpiwcgB038
ClCG03G004370	Cucsa.134310	Cucumber (Gy14) v1	cgywcgB222
ClCG03G004370	CmaCh18G002740	Cucurbita maxima (Rimu)	cmawcgB358
ClCG03G004370	MELO3C002428.2	Melon (DHL92) v3.6.1	medwcgB144
ClCG03G004370	MELO3C002435.2	Melon (DHL92) v3.6.1	medwcgB143

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G004370	Cucumber (Chinese Long) v3	cucwcgB038
ClCG03G004370	Cucurbita maxima (Rimu)	cmawcgB196
ClCG03G004370	Cucurbita moschata (Rifu)	cmowcgB350
ClCG03G004370	Cucumber (Chinese Long) v2	cuwcgB035
ClCG03G004370	Melon (DHL92) v3.5.1	mewcgB152
ClCG03G004370	Watermelon (97103) v1	wcgwmB223
ClCG03G004370	Cucurbita pepo (Zucchini)	cpewcgB036
ClCG03G004370	Cucurbita pepo (Zucchini)	cpewcgB469
ClCG03G004370	Bottle gourd (USVL1VR-Ls)	lsiwcgB184
ClCG03G004370	Cucumber (Gy14) v2	cgybwcgB033
ClCG03G004370	Silver-seed gourd	carwcgB0480
ClCG03G004370	Silver-seed gourd	carwcgB0980