ClCG03G004370.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G004370.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	SLG-Sc and SLA-Sc genes and Melmoth retrotransposon sequence
Location	CG_Chr03 : 4766396 .. 4766974 (+)
Sequence length	579

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCGGATACAAAGGAAGAAAGTTATTCTCAAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTACATCTTACTTCACAAAGCTCGAGGCATTATGGAATGAACTCGCCACCTTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGTAACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAGGGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCCAAAATGTGCAACCAAATCCTTATTACCCCTCCATTTCCAACGGTGGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGCTGCATTAGAAACTGTTGCGGAAAAAGTAATTCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAACAATGGTGATAACTATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTCACCAGCACCAATTTGATCAAAATCTAGTTACAAGCTTCCCCATTGACCCATTGCTAACAGACCTTGGATCTCCTGTGCGATGCTAA

mRNA sequence

ATGGGATCGGATACAAAGGAAGAAAGTTATTCTCAAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTACATCTTACTTCACAAAGCTCGAGGCATTATGGAATGAACTCGCCACCTTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGTAACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAGGGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCCAAAATGTGCAACCAAATCCTTATTACCCCTCCATTTCCAACGGTGGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGCTGCATTAGAAACTGTTGCGGAAAAAGTAATTCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAACAATGGTGATAACTATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTCACCAGCACCAATTTGATCAAAATCTAGTTACAAGCTTCCCCATTGACCCATTGCTAACAGACCTTGGATCTCCTGTGCGATGCTAA

Coding sequence (CDS)

ATGGGATCGGATACAAAGGAAGAAAGTTATTCTCAAAGCAATGATTCGAGAATGTTTCAAATTTACAAGGAAATTGCATCTCATCGTCAAGAAAACTCATCCATTACATCTTACTTCACAAAGCTCGAGGCATTATGGAATGAACTCGCCACCTTCAATACCGATTTGCCTCAATGTTCTTGCGGTGGTGTAACTGAAAAGCTAAGTGAGTATATGGAGAGAGAAAGGGTTATGCAATTTCTTGTGGGACTAAACGATTCTTATTCCAAAATGTGCAACCAAATCCTTATTACCCCTCCATTTCCAACGGTGGAGAAAGCCTATTATGCAATTATTCGAGAAGAAAAACGTAGGGAATTGCTTGCTGCATTAGAAACTGTTGCGGAAAAAGTAATTCAAAACAATTGGCTTGATCTTCAGAATCAGAATGCTCATTCCAACAATGGTGATAACTATGATGGTGTTCAAGGATTAGTTGATAGTAATAATCTTCACCAGCACCAATTTGATCAAAATCTAGTTACAAGCTTCCCCATTGACCCATTGCTAACAGACCTTGGATCTCCTGTGCGATGCTAA

Protein sequence

MGSDTKEESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRRELLAALETVAEKVIQNNWLDLQNQNAHSNNGDNYDGVQGLVDSNNLHQHQFDQNLVTSFPIDPLLTDLGSPVRC

Homology

[Close]

BLAST of ClCG03G004370.1 vs. TrEMBL
Match: A0A0A0LU31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.3e-32
Identity = 80/154 (51.95%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ K+E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++ T+++D  Q
Sbjct: 211 MGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQ 270

Query: 61  -CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKR 120
             S  G     SE  ER++VMQF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKR
Sbjct: 271 GYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKR 330

Query: 121 RELLAALETVAEKVIQNNWLDLQNQNAHSNNGDN 152
           REL  AL  +A +VIQ+++     Q   SNNGDN
Sbjct: 331 RELFVALGIMAAQVIQSSY-----QYGSSNNGDN 359

[Close]

BLAST of ClCG03G004370.1 vs. TrEMBL
Match: A0A0A0LRE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ ++E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++  ++++   
Sbjct: 201 MGSNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSE--- 260

Query: 61  CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRR 120
            S  G+    SE  ER++V+QF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKRR
Sbjct: 261 -SVEGIAF-WSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRR 320

Query: 121 ELLAALETVAEKVIQNNWLDLQNQNAHSNNGDNYD-GVQGLVDSN 163
           EL  AL TVA +VIQ+++     QN  SNNGDN + G+   +D++
Sbjct: 321 ELFVALGTVAAQVIQSSY-----QNGSSNNGDNKNLGIDQEIDTS 355

[Close]

BLAST of ClCG03G004370.1 vs. TrEMBL
Match: A0A0A0LRX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059720 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 61/123 (49.59%), Postives = 86/123 (69.92%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDS--RMFQIYKEIASHRQENSSITSYFTKLEALWNELA--TFNTDL 60
           + SDT  E ++  ++S   + +IY+ IASHR+ N+SI SYF  L+ALWNE A  + N + 
Sbjct: 106 VSSDTIIEQHNSESNSPTMLLKIYELIASHRKGNTSIKSYFRNLKALWNEAAASSINLNS 165

Query: 61  PQCSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEK 120
           PQ S     E+ SE+MERE++MQFL+GLNDSYS +C+QIL   P PTV++AY  I+ E+K
Sbjct: 166 PQSSSNNAIEERSEFMEREKLMQFLLGLNDSYSLLCSQILAVRPSPTVDQAYSLIVGEQK 225

[Close]

BLAST of ClCG03G004370.1 vs. TrEMBL
Match: A5BC87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 55/110 (50.00%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           E +SQ NDSR++QI ++I  HRQ   SI+ Y+TKL+A W+EL++++  L  CSCGG+ EK
Sbjct: 115 ERFSQGNDSRIYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVL-SCSCGGL-EK 174

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKR 118
           L E  E+ERVMQFL+GLNDSY+ +  QIL+  P P   + Y  ++++EK+
Sbjct: 175 LKEMDEKERVMQFLMGLNDSYAAIRGQILLMQPLPDTRRVYSLVLQQEKQ 222

[Close]

BLAST of ClCG03G004370.1 vs. TrEMBL
Match: A5BCQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-22
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 7   EESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTE 66
           E  + Q NDSR++QI ++I  HRQ   SI+ Y+TKL+A W+EL++++  L  CSCGG+ E
Sbjct: 152 ENVFRQGNDSRIYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVL-SCSCGGL-E 211

Query: 67  KLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           KL E  E+ERVMQFL+GLNDSY+ +  QIL+  P P   + Y  ++++EK+ E+
Sbjct: 212 KLKERDEKERVMQFLMGLNDSYAAIRGQILLMHPLPDTRRVYSLVLQQEKQVEV 263

[Close]

BLAST of ClCG03G004370.1 vs. NCBI nr
Match: gi|700209388|gb|KGN64484.1| (hypothetical protein Csa_1G058670 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 9.0e-32
Identity = 80/154 (51.95%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ K+E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++ T+++D  Q
Sbjct: 211 MGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQ 270

Query: 61  -CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKR 120
             S  G     SE  ER++VMQF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKR
Sbjct: 271 GYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKR 330

Query: 121 RELLAALETVAEKVIQNNWLDLQNQNAHSNNGDN 152
           REL  AL  +A +VIQ+++     Q   SNNGDN
Sbjct: 331 RELFVALGIMAAQVIQSSY-----QYGSSNNGDN 359

[Close]

BLAST of ClCG03G004370.1 vs. NCBI nr
Match: gi|778658332|ref|XP_011652531.1| (PREDICTED: protein ENL-like [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1


Query: 1   MGSDTKEESYSQSNDSRM--FQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQ 60
           MGS+ ++E  S  N S +   QIY++IASHRQ N S+  YF KL+ LWN++  ++++   
Sbjct: 201 MGSNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSE--- 260

Query: 61  CSCGGVTEKLSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRR 120
            S  G+    SE  ER++V+QF +GLND YS +C+QIL+  PFPTVE+AY  IIREEKRR
Sbjct: 261 -SVEGIAF-WSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRR 320

Query: 121 ELLAALETVAEKVIQNNWLDLQNQNAHSNNGDNYD-GVQGLVDSN 163
           EL  AL TVA +VIQ+++     QN  SNNGDN + G+   +D++
Sbjct: 321 ELFVALGTVAAQVIQSSY-----QNGSSNNGDNKNLGIDQEIDTS 355

[Close]

BLAST of ClCG03G004370.1 vs. NCBI nr
Match: gi|645280959|ref|XP_008245416.1| (PREDICTED: uncharacterized protein LOC103343532 [Prunus mume])

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 59/113 (52.21%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           + +SQ NDSR++QI +EI  HRQE  S++ Y+TKL+ALW+ELA++N D+P C+CGG+ +K
Sbjct: 126 DRFSQGNDSRIYQIKREIVEHRQEQQSVSIYYTKLKALWDELASYN-DIPTCTCGGL-KK 185

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           +S+  E+ERVMQFL+GLNDSY+ +  QIL+  P P   KAY  + ++EK+ E+
Sbjct: 186 VSDRDEKERVMQFLMGLNDSYAAVRGQILLMQPLPDTRKAYSLVHQQEKQVEV 236

[Close]

BLAST of ClCG03G004370.1 vs. NCBI nr
Match: gi|658030034|ref|XP_008350470.1| (PREDICTED: uncharacterized protein LOC103413804 [Malus domestica])

HSP 1 Score: 122.5 bits (306), Expect = 8.2e-25
Identity = 57/113 (50.44%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           + +SQ NDSR++QI +EI  HRQE  SI+ Y+TKL+ALW+ELA++N + P C+CGG+ +K
Sbjct: 123 DRFSQGNDSRIYQIKREIVEHRQEQQSISVYYTKLKALWDELASYN-ETPTCTCGGL-KK 182

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           +++  E+ERVMQFL+GLNDSY+ +  QIL+  P P   +AY  ++++EK+ E+
Sbjct: 183 INDRDEKERVMQFLMGLNDSYAAVRGQILLMQPLPDTRRAYSLVLQQEKQVEV 233

[Close]

BLAST of ClCG03G004370.1 vs. NCBI nr
Match: gi|645280696|ref|XP_008245294.1| (PREDICTED: uncharacterized protein LOC103343416 [Prunus mume])

HSP 1 Score: 122.5 bits (306), Expect = 8.2e-25
Identity = 58/113 (51.33%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 8   ESYSQSNDSRMFQIYKEIASHRQENSSITSYFTKLEALWNELATFNTDLPQCSCGGVTEK 67
           + +SQ NDSR++QI +EI  HRQE  S++ Y+TKL+ALW+ELA++N ++P C+CGG+ +K
Sbjct: 126 DRFSQGNDSRIYQIKREIVEHRQEQQSVSIYYTKLKALWDELASYN-EIPTCTCGGL-KK 185

Query: 68  LSEYMERERVMQFLVGLNDSYSKMCNQILITPPFPTVEKAYYAIIREEKRREL 121
           +S   E+ERVMQFL+GLNDSY+ +  QIL+  P P   KAY  + ++EK+ E+
Sbjct: 186 VSNRDEKERVMQFLMGLNDSYAAVRGQILLMQPLPDTRKAYSLVHQQEKQVEV 236

The following BLAST results are available for this feature:

BLAST of ClCG03G004370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU31_CUCSA	6.3e-32	51.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1	[more]
A0A0A0LRE6_CUCSA	1.2e-30	48.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1	[more]
A0A0A0LRX9_CUCSA	4.1e-23	49.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059720 PE=4 SV=1	[more]
A5BC87_VITVI	1.5e-22	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1	[more]
A5BCQ9_VITVI	5.9e-22	48.25	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1	[more]

BLAST of ClCG03G004370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209388\|gb\|KGN64484.1\|	9.0e-32	51.95	hypothetical protein Csa_1G058670 [Cucumis sativus]	[more]
gi\|778658332\|ref\|XP_011652531.1\|	1.7e-30	48.48	PREDICTED: protein ENL-like [Cucumis sativus]	[more]
gi\|645280959\|ref\|XP_008245416.1\|	1.6e-25	52.21	PREDICTED: uncharacterized protein LOC103343532 [Prunus mume]	[more]
gi\|658030034\|ref\|XP_008350470.1\|	8.2e-25	50.44	PREDICTED: uncharacterized protein LOC103413804 [Malus domestica]	[more]
gi\|645280696\|ref\|XP_008245294.1\|	8.2e-25	51.33	PREDICTED: uncharacterized protein LOC103343416 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G004370	ClCG03G004370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G004370.1	ClCG03G004370.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G004370.1.cds1	ClCG03G004370.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 12..127 score: 8.3
None	No IPR available	PANTHER	PTHR34222:SF2	SUBFAMILY NOT NAMED	coord: 12..127 score: 8.3