MELO3C032839.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032839.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr07 : 26181938 .. 26182858 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCTTCCAAACATATATTTCATATTTTTCTAATCTACCACAAAAAGAGGGGGAAAAAAACCGAACTTCTAAAATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAGTAATGTTCATGCAAGGATATCTCATTCCATCTATATTCATGGTAAGCTTTTTTTCCCTTCTTAATTTCGTTTCATTGCACTCAATATCATGCCTTCGTTTCAATTCTTTCTCGTATACAAAGTGAGCTTAAGCTTACTAATAGCCAACATAACCTTTTTATGTTAAAGTTTTTGATCTAAATCTTTATTGTTATTGTATTTGTAGAAATCTCATTCTTGTATGTGTCTCAAACATACCCTTAATTAATAAGAGATATACATACAAATGATTTTAATTATTCGATAGTTGATTTTGGTTAAAATTTATTATTTACTTTGGTTATTATAATTACATATTATTTTGGGGTTAATTTTGCTAATTGCACATTATCTTTCCAAATGTAGGTATGAAGTCTGCAGAGATAAATAATGTTAATACAATTGCTCAACCACCAAGTACCCAAAATGATGAAGATGGTAGGGTTCTAAATAATAGGAAACTACTTTTGAAATTAAGATATATTATATAATGACAATAAACTTTTCATCATTTTCTAATTGTAGGTATGAAGAACAATACAGCAACAAACAATACAATTATTGCTGCTCCACCACCAGCAAAAAATGAAGATGGTGTTTGGAATGGGAACTTTTGATGCTCAATAATATCTGTATACAATATTCTTATTATCGATTTGATTTAATTAATGTAACAAATTCACTTATAGCTTATTAATCATTCTTTGTTTTTAAAAGAAAAAAGAAATTAGGATATGGAGTATATTTGCATCATATATTTTCATAACTACCTG

mRNA sequence

ATATCTTCCAAACATATATTTCATATTTTTCTAATCTACCACAAAAAGAGGGGGAAAAAAACCGAACTTCTAAAATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAGTAATGTTCATGCAAGGATATCTCATTCCATCTATATTCATGGTATGAAGTCTGCAGAGATAAATAATGTTAATACAATTGCTCAACCACCAAGTACCCAAAATGATGAAGATGGTATGAAGAACAATACAGCAACAAACAATACAATTATTGCTGCTCCACCACCAGCAAAAAATGAAGATGGTGTTTGGAATGGGAACTTTTGATGCTCAATAATATCTGTATACAATATTCTTATTATCGATTTGATTTAATTAATGTAACAAATTCACTTATAGCTTATTAATCATTCTTTGTTTTTAAAAGAAAAAAGAAATTAGGATATGGAGTATATTTGCATCATATATTTTCATAACTACCTG

Coding sequence (CDS)

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAGTAATGTTCATGCAAGGATATCTCATTCCATCTATATTCATGGTATGAAGTCTGCAGAGATAAATAATGTTAATACAATTGCTCAACCACCAAGTACCCAAAATGATGAAGATGGTATGAAGAACAATACAGCAACAAACAATACAATTATTGCTGCTCCACCACCAGCAAAAAATGAAGATGGTGTTTGGAATGGGAACTTTTGA

Protein sequence

MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEDGMKNNTATNNTIIAAPPPAKNEDGVWNGNF

Homology

[Close]

BLAST of MELO3C032839.2 vs. NCBI nr
Match: KGN53137.1 (hypothetical protein Csa_4G022240 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-12
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEXXXXX 60
          MASIIWKLFLIITLILAS+ VHAR S S YIH M+ AE+ NV+TIAQPP+TQN  XXXXX
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAEL-NVDTIAQPPNTQNXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXXXXDGVWNGNF 87
          XXXXXXXXXXXXXXXX  DGVW+GNF
Sbjct: 61 XXXXXXXXXXXXXXXXHEDGVWDGNF 85

[Close]

BLAST of MELO3C032839.2 vs. TrEMBL
Match: tr|A0A0A0KXJ2|A0A0A0KXJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-12
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MASIIWKLFLIITLILASSNVHARISHSIYIHGMKSAEINNVNTIAQPPSTQNDEXXXXX 60
          MASIIWKLFLIITLILAS+ VHAR S S YIH M+ AE+ NV+TIAQPP+TQN  XXXXX
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAEL-NVDTIAQPPNTQNXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXXXXDGVWNGNF 87
          XXXXXXXXXXXXXXXX  DGVW+GNF
Sbjct: 61 XXXXXXXXXXXXXXXXHEDGVWDGNF 85

The following BLAST results are available for this feature:

BLAST of MELO3C032839.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53137.1	6.9e-12	80.23	hypothetical protein Csa_4G022240 [Cucumis sativus]	[more]

BLAST of MELO3C032839.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032839.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032839.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXJ2\|A0A0A0KXJ2_CUCSA	4.6e-12	80.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032839.2.1	MELO3C032839.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C032839.2	Csa4G022240	Cucumber (Chinese Long) v2	cumedB297
MELO3C032839.2	CSPI04G03890	Wild cucumber (PI 183967)	cpimedB301
MELO3C032839.2	Lsi07G000940	Bottle gourd (USVL1VR-Ls)	lsimedB471
MELO3C032839.2	CsGy4G003790	Cucumber (Gy14) v2	cgybmedB266
MELO3C032839.2	CsaV3_4G003940	Cucumber (Chinese Long) v3	cucmedB307

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032839.2	Watermelon (97103) v2	medwmbB491
MELO3C032839.2	Wax gourd	medwgoB573
MELO3C032839.2	Wax gourd	medwgoB585
MELO3C032839.2	Cucumber (Gy14) v1	cgymedB109
MELO3C032839.2	Cucurbita maxima (Rimu)	cmamedB791
MELO3C032839.2	Cucurbita moschata (Rifu)	cmomedB788
MELO3C032839.2	Cucurbita pepo (Zucchini)	cpemedB497
MELO3C032839.2	Watermelon (Charleston Gray)	medwcgB488
MELO3C032839.2	Watermelon (97103) v1	medwmB493