CSPI04G03890 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G03890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 2434912 .. 2435790 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAATATATTATATCTTCCAAACTTATATTTCATAGTTTTCTAATCTACCATAAAAAAAAAAACAGACAGCTTCTAAAATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAAGGAGATCTCCTTCCTTCTATATTCATCGTAAGCTTTTCCCCCTCTTAATTTCGCTTCAATTGTGCTCGATATCATACCTTTAAGTTTAATAGTAACCAACATGATCTTTTTTTGTATCTAGAGATTTAAAGTTTGATTCCAATCTTCATGGTTATTGTACTACTAAGAGCTAAAGAAGAACACGGAATGATAAAATGATTTTAATTATTAGAGAGTTGATTGTGGTTAAAATTTATTATTTCTTATGGTTATTATAATTACATTATCTTTCCAAATGCTGCAGGTATGGAGAATGCTGAGCTAAATGTTGACACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTAAGGTTCTAAATAATAGGAAACTACTTTTGAAATTAAGAATATATATTATATATATATGAAAATAATTAACTTTTCATCATTTTCTAATTGTAGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAAAATGAAGATGGTGTGTGGGATGGGAACTTTTGATGCTCAATATCAATGTAATATATACAGTATTCTTATTATCACAATTTGATTCAATTAATGTAACAAATTCATTTACAGCTTATTAATCATTCTTTGTTTTGGAAAGGAAAAAAAAAACTTAAGGATATGGAGTATTTGCTTCATATATGGTAAAAAGCATTATCTACAAATGATCACTAGTTTGCCGA

mRNA sequence

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAAGGAGATCTCCTTCCTTCTATATTCATCGTATGGAGAATGCTGAGCTAAATGTTGACACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAAAATGAAGATGGTGTGTGGGATGGGAACTTTTGA

Coding sequence (CDS)

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAAGGAGATCTCCTTCCTTCTATATTCATCGTATGGAGAATGCTGAGCTAAATGTTGACACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAAAATGAAGATGGTGTGTGGGATGGGAACTTTTGA
Homology
[Close]
BLAST of CSPI04G03890 vs. TrEMBL
Match: A0A0A0KXJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022240 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-38
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 

Query: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMENAELNVDTIAQPPNTQNDEDGMKNN 60
          MASIIWKLFLIITLILASNYVHARRSPSFYIHRME AELNVDTIAQPPNTQNDEDGMKNN
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN 60

Query: 61 TETNNTTTAAPPPAKNEDGVWDGNF 86
          TETNNTTTAAPPPAK+EDGVWDGNF
Sbjct: 61 TETNNTTTAAPPPAKHEDGVWDGNF 85

[Close]
BLAST of CSPI04G03890 vs. NCBI nr
Match: gi|700197979|gb|KGN53137.1| (hypothetical protein Csa_4G022240 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 

Query: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMENAELNVDTIAQPPNTQNDEDGMKNN 60
          MASIIWKLFLIITLILASNYVHARRSPSFYIHRME AELNVDTIAQPPNTQNDEDGMKNN
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN 60

Query: 61 TETNNTTTAAPPPAKNEDGVWDGNF 86
          TETNNTTTAAPPPAK+EDGVWDGNF
Sbjct: 61 TETNNTTTAAPPPAKHEDGVWDGNF 85

The following BLAST results are available for this feature:
BLAST of CSPI04G03890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G03890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXJ2_CUCSA1.2e-3897.65Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022240 PE=4 SV=1[more]
BLAST of CSPI04G03890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G03890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197979|gb|KGN53137.1|1.7e-3897.65hypothetical protein Csa_4G022240 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03890.1CSPI04G03890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G03890Csa4G022240Cucumber (Chinese Long) v2cpicuB182
CSPI04G03890Lsi07G000940Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G03890MELO3C032839.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G03890CsaV3_4G003940Cucumber (Chinese Long) v3cpicucB213
CSPI04G03890CsGy4G003790Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G03890Watermelon (97103) v2cpiwmbB326
CSPI04G03890Wax gourdcpiwgoB370
CSPI04G03890Cucumber (Gy14) v1cgycpiB103
CSPI04G03890Cucurbita maxima (Rimu)cmacpiB337
CSPI04G03890Cucurbita maxima (Rimu)cmacpiB716
CSPI04G03890Cucurbita moschata (Rifu)cmocpiB328
CSPI04G03890Cucurbita moschata (Rifu)cmocpiB708
CSPI04G03890Melon (DHL92) v3.5.1cpimeB310
CSPI04G03890Watermelon (Charleston Gray)cpiwcgB336
CSPI04G03890Watermelon (97103) v1cpiwmB315
CSPI04G03890Cucurbita pepo (Zucchini)cpecpiB398