CsGy4G003790 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G003790
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 2399631 .. 2400537 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTAAAAGAGCTCAAGCAAATGCACTCTCAAAACAATATATTATATCTTCCAAACTTATATTTCATAGTTTTCTAATCTACCATAAAAAAAAACAGACAGCTTCTAAAATGACTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAACGAGATCTCCTTCCTTCTATATTCATCGTAAGCTTTTCCCCCTCTTAATTTCGCTTCAATTGTGCTCGATATCATGCCTTTTAAGTTTACTAGTAACCAACATGATCTTTTTTTGTATCTAGAGATTTAAAGTTTGATTCCAATCTTCATGGTTGTTGTACTAATAAGAGCTAAAGAAGAACACGGAATGATAAAATGATTTTAATTATTAGAGAGTTGATTGTGGTTAAAATTTATTATTTCTTATGGTTATTATAATTACATTATCTTTCCAAATGCAGGTATGGAGTATGCTGAGCTAAATGTTGATACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTAGGGTTCTAAATAATAGGAAACTACTTTTGAAATTAAGAATATTATATATATATATATGTGAAAATAATTAACTTTTCATCATTTTCTAACTGTAGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAACATGAAGATGGTGTGTGGGATGGGAACTTTTGATGCTCAATATCAATGTAATATATACAGTATTCTTATTATCACAATTTGATTCAATTAATGTAACAAATTCATTTACAGCTTATTAATCATTCTTTGTTTTGAAAAGGAAAAAAAAACTTAAGGATATGGAGTATTTGCTTCATATATGGTAAAAAGCATTATCTACAAATGATCACTAGTTTGCCGA

mRNA sequence

AGCTTAAAAGAGCTCAAGCAAATGCACTCTCAAAACAATATATTATATCTTCCAAACTTATATTTCATAGTTTTCTAATCTACCATAAAAAAAAACAGACAGCTTCTAAAATGACTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAACGAGATCTCCTTCCTTCTATATTCATCGTATGGAGTATGCTGAGCTAAATGTTGATACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAACATGAAGATGGTGTGTGGGATGGGAACTTTTGATGCTCAATATCAATGTAATATATACAGTATTCTTATTATCACAATTTGATTCAATTAATGTAACAAATTCATTTACAGCTTATTAATCATTCTTTGTTTTGAAAAGGAAAAAAAAACTTAAGGATATGGAGTATTTGCTTCATATATGGTAAAAAGCATTATCTACAAATGATCACTAGTTTGCCGA

Coding sequence (CDS)

ATGACTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAACGAGATCTCCTTCCTTCTATATTCATCGTATGGAGTATGCTGAGCTAAATGTTGATACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAACATGAAGATGGTGTGTGGGATGGGAACTTTTGA

Protein sequence

MTSIIWKLFLIITLILASNYVHATRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNNTETNNTTTAAPPPAKHEDGVWDGNF

Homology

[Close]

BLAST of CsGy4G003790 vs. NCBI nr
Match: KGN53137.1 (hypothetical protein Csa_4G022240 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 5.0e-23
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MTSIIWKLFLIITLILASNYVHATRSPSFYIHRMEYAELNVDTIAQPPNTQNXXXXXXXX 60
          M SIIWKLFLIITLILASNYVHA RSPSFYIHRMEYAELNVDTIAQPPNTQNXXXXXXXX
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXHEDGVWDGNF 86
          XXXXXXXXXXXXXXXHEDGVWDGNF
Sbjct: 61 XXXXXXXXXXXXXXXHEDGVWDGNF 85

[Close]

BLAST of CsGy4G003790 vs. TrEMBL
Match: tr|A0A0A0KXJ2|A0A0A0KXJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-23
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MTSIIWKLFLIITLILASNYVHATRSPSFYIHRMEYAELNVDTIAQPPNTQNXXXXXXXX 60
          M SIIWKLFLIITLILASNYVHA RSPSFYIHRMEYAELNVDTIAQPPNTQNXXXXXXXX
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXHEDGVWDGNF 86
          XXXXXXXXXXXXXXXHEDGVWDGNF
Sbjct: 61 XXXXXXXXXXXXXXXHEDGVWDGNF 85

The following BLAST results are available for this feature:

BLAST of CsGy4G003790 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53137.1	5.0e-23	97.65	hypothetical protein Csa_4G022240 [Cucumis sativus]	[more]

BLAST of CsGy4G003790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G003790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G003790 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXJ2\|A0A0A0KXJ2_CUCSA	3.3e-23	97.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G003790.1	CsGy4G003790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G003790	Csa4G022240	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G003790	CSPI04G03890	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G003790	Lsi07G000940	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G003790	MELO3C032839.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G003790	CsaV3_4G003940	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G003790	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G003790	Watermelon (Charleston Gray)	cgybwcgB297
CsGy4G003790	Watermelon (97103) v1	cgybwmB290
CsGy4G003790	Watermelon (97103) v2	cgybwmbB298
CsGy4G003790	Wax gourd	cgybwgoB355
CsGy4G003790	Wax gourd	cgybwgoB361
CsGy4G003790	Cucurbita maxima (Rimu)	cgybcmaB493
CsGy4G003790	Cucurbita maxima (Rimu)	cgybcmaB542
CsGy4G003790	Cucurbita moschata (Rifu)	cgybcmoB464
CsGy4G003790	Cucurbita moschata (Rifu)	cgybcmoB516
CsGy4G003790	Cucurbita pepo (Zucchini)	cgybcpeB503