Csa4G022240 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G022240
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 2372540 .. 2373151 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAAGGAGATCTCCTTCCTTCTATATTCATCGTAAGCTTTTCCCCCTCTTAATTTCGCTTCAATTGTGCTCGATATCATGCCTTTTAAGTTTACTAGTAACCAACATGATCTTTTTTTGTATCTAGAGATTTAAAGTTTGATTCCAATCTTCATGGTTGTTGTACTAATGAGAGATAAAAGAAGAACACGGAATGATAAAATGATTTTGATTATTAGAGAGTTGATTGTGGTTAAAATTTATTATTTCTTATGGTTATTATAATTACATTATCTTTCCAAATGCTGCAGGTATGGAGTATGCTGAGCTAAATGTTGATACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTAGGGTTCTAAATAATAGGAAACTACTTTTGAAATTAAGAATATTATATATATATATGTGAAAATAATTAACTTTTCATCATTTTCTAACTGTAGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAACATGAAGATGGTGTGTGGGATGGGAACTTTTGA

mRNA sequence

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAAGGAGATCTCCTTCCTTCTATATTCATCGTATGGAGTATGCTGAGCTAAATGTTGATACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAACATGAAGATGGTGTGTGGGATGGGAACTTTTGA

Coding sequence (CDS)

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATTATGTTCATGCAAGGAGATCTCCTTCCTTCTATATTCATCGTATGGAGTATGCTGAGCTAAATGTTGATACAATTGCTCAACCACCTAATACTCAAAATGATGAAGATGGTATGAAGAACAATACAGAAACAAACAATACAACTACTGCTGCTCCACCACCAGCCAAACATGAAGATGGTGTGTGGGATGGGAACTTTTGA

Protein sequence

MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNNTETNNTTTAAPPPAKHEDGVWDGNF*
Homology
[Close]
BLAST of Csa4G022240 vs. TrEMBL
Match: A0A0A0KXJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022240 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.9e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN 60
          MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN 60

Query: 61 TETNNTTTAAPPPAKHEDGVWDGNF 86
          TETNNTTTAAPPPAKHEDGVWDGNF
Sbjct: 61 TETNNTTTAAPPPAKHEDGVWDGNF 85

[Close]
BLAST of Csa4G022240 vs. NCBI nr
Match: gi|700197979|gb|KGN53137.1| (hypothetical protein Csa_4G022240 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN 60
          MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSFYIHRMEYAELNVDTIAQPPNTQNDEDGMKNN 60

Query: 61 TETNNTTTAAPPPAKHEDGVWDGNF 86
          TETNNTTTAAPPPAKHEDGVWDGNF
Sbjct: 61 TETNNTTTAAPPPAKHEDGVWDGNF 85

The following BLAST results are available for this feature:
BLAST of Csa4G022240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXJ2_CUCSA7.9e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022240 PE=4 SV=1[more]
BLAST of Csa4G022240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197979|gb|KGN53137.1|1.1e-42100.00hypothetical protein Csa_4G022240 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G022240.1Csa4G022240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G022240Lsi07G000940Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G022240MELO3C032839.2Melon (DHL92) v3.6.1cumedB297
Csa4G022240CSPI04G03890Wild cucumber (PI 183967)cpicuB182
Csa4G022240CsGy4G003790Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G022240Watermelon (97103) v2cuwmbB316
Csa4G022240Wax gourdcuwgoB368
Csa4G022240Cucumber (Gy14) v1cgycuB102
Csa4G022240Cucurbita maxima (Rimu)cmacuB332
Csa4G022240Cucurbita maxima (Rimu)cmacuB710
Csa4G022240Cucurbita moschata (Rifu)cmocuB321
Csa4G022240Cucurbita moschata (Rifu)cmocuB700
Csa4G022240Melon (DHL92) v3.5.1cumeB312
Csa4G022240Watermelon (Charleston Gray)cuwcgB319
Csa4G022240Watermelon (97103) v1cuwmB312
Csa4G022240Cucurbita pepo (Zucchini)cpecuB401