MELO3C025802 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025802
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Glutamate racemase
Location	chr4 : 18525243 .. 18525587 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGTAACTACTGCGCTTACGTGAACCAGAACTCGTCTCTGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGCGCTCTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGACTTATAATTGCCATTAAGACATCATCATGTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

mRNA sequence

ATGGATAGTAACTACTGCGCTTACGTGAACCAGAACTCGTCTCTGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGCGCTCTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGACTTATAATTGCCATTAAGACATCATCATGTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Coding sequence (CDS)

ATGGATAGTAACTACTGCGCTTACGTGAACCAGAACTCGTCTCTGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGCGCTCTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGACTTATAATTGCCATTAAGACATCATCATGTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Protein sequence

MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTSSCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR*

Homology

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BLAST of MELO3C025802 vs. TrEMBL
Match: A0A0A0LEN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.3e-52
Identity = 107/114 (93.86%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60
           MDSNY AY NQNSS RPLAI LALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MELO3C025802 vs. TrEMBL
Match: A0A067KX22_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24696 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 76/119 (63.87%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 5   YCAYVNQNSSLRPLAIVLALASAVALSPL---------RSYETSWSSGFVVPLVLLGLII 64
           Y  Y +QNSS R LA+VLAL SAV LSPL         R YET WSSGFV+P+VL GLII
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 65  AIKTSSCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           AI+T+S  SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

[Close]

BLAST of MELO3C025802 vs. TrEMBL
Match: M5WZ95_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016854mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-29
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 7   AYVNQNSSLRPLAIVLALASAVALSPL---------RSYETSWSSGFVVPLVLLGLIIAI 66
           AY + +SS R  A+VLAL SA+ LSPL         R YET WSSGFV+P+VL GLIIAI
Sbjct: 7   AYTSHSSSQRSTAMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSCCSSTSRDS----AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLW 115
           KT+S  SS+S  S    + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLW
Sbjct: 67  KTTSSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLW 126

[Close]

BLAST of MELO3C025802 vs. TrEMBL
Match: B9GKT9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16850g PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 72/118 (61.02%), Postives = 87/118 (73.73%), Query Frame = 1


Query: 10  NQNSSLRPLAIVLALASAVALSPLR-----------SYETSWSSGFVVPLVLLGLIIAIK 69
           ++NSS R LA+VLALASAV LSPL            ++ET WSSGFV+P+VL GLIIAI+
Sbjct: 10  SRNSSQRALAMVLALASAVVLSPLYVKRKNDHTGYFNHETKWSSGFVLPMVLAGLIIAIR 69

Query: 70  TSSCCSSTSRDSA--ILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           T+S   S  R +A   +PS  PSWVL+IGSSSWGLAG+L+ML+L LSWQ SVQEF WR
Sbjct: 70  TTSSSMSVHRGAAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEFFWR 127

[Close]

BLAST of MELO3C025802 vs. TrEMBL
Match: B9S5Q4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652420 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-28
Identity = 73/118 (61.86%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 8   YVNQNSSLRPLAIVLALASAVALSPL--------RSYETS-WSSGFVVPLVLLGLIIAIK 67
           Y +QNSS R LA+VLAL SAV LSPL        R YET  W+SGFV+P+VL GLIIAI+
Sbjct: 6   YTSQNSSQRALAMVLALVSAVVLSPLYVQRRNDMRFYETKYWNSGFVLPVVLGGLIIAIR 65

Query: 68  TSSCCSSTSRDS--AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           T+S  SSTS  +  +++P+  PSWVL+IGSSSWGLAGI++ML+L LSWQ SVQEF W+
Sbjct: 66  TTSSSSSTSLGATGSLIPTPDPSWVLRIGSSSWGLAGIIVMLMLVLSWQESVQEFFWK 123

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: gi|700203368|gb|KGN58501.1| (hypothetical protein Csa_3G651850 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.7e-52
Identity = 107/114 (93.86%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60
           MDSNY AY NQNSS RPLAI LALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: gi|643733854|gb|KDP40697.1| (hypothetical protein JCGZ_24696 [Jatropha curcas])

HSP 1 Score: 138.7 bits (348), Expect = 6.6e-30
Identity = 76/119 (63.87%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 5   YCAYVNQNSSLRPLAIVLALASAVALSPL---------RSYETSWSSGFVVPLVLLGLII 64
           Y  Y +QNSS R LA+VLAL SAV LSPL         R YET WSSGFV+P+VL GLII
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 65  AIKTSSCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           AI+T+S  SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: gi|645243894|ref|XP_008228186.1| (PREDICTED: uncharacterized protein LOC103327624 [Prunus mume])

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 7   AYVNQNSSLRPLAIVLALASAVALSPL---------RSYETSWSSGFVVPLVLLGLIIAI 66
           AY + +SS R  A+VLAL SA+ LSPL         R YET WSSGFV+P+VL GLIIAI
Sbjct: 7   AYTSHSSSQRSTAMVLALVSAIVLSPLYVTNRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KT--SSCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           KT  SS  SS+S+  + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLWR
Sbjct: 67  KTTSSSSSSSSSQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 125

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: gi|595974543|ref|XP_007217775.1| (hypothetical protein PRUPE_ppa016854mg [Prunus persica])

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-29
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 7   AYVNQNSSLRPLAIVLALASAVALSPL---------RSYETSWSSGFVVPLVLLGLIIAI 66
           AY + +SS R  A+VLAL SA+ LSPL         R YET WSSGFV+P+VL GLIIAI
Sbjct: 7   AYTSHSSSQRSTAMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSCCSSTSRDS----AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLW 115
           KT+S  SS+S  S    + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLW
Sbjct: 67  KTTSSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLW 126

[Close]

BLAST of MELO3C025802 vs. NCBI nr
Match: gi|645244285|ref|XP_008228360.1| (PREDICTED: uncharacterized protein LOC103327771 [Prunus mume])

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-29
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 7   AYVNQNSSLRPLAIVLALASAVALSPL---------RSYETSWSSGFVVPLVLLGLIIAI 66
           AY + +SS R  A+VLAL SA+ LSPL         R YET WSSGFV+P+VL GLIIAI
Sbjct: 7   AYTSHSSSQRSTAVVLALVSAIVLSPLYVTSRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSCCSSTSRDS---AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           KT+S  SS+S  +   + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLWR
Sbjct: 67  KTTSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 126

The following BLAST results are available for this feature:

BLAST of MELO3C025802 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEN3_CUCSA	3.3e-52	93.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651850 PE=4 SV=1	[more]
A0A067KX22_JATCU	4.6e-30	63.87	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24696 PE=4 SV=1	[more]
M5WZ95_PRUPE	3.0e-29	60.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016854mg PE=4 SV=1	[more]
B9GKT9_POPTR	1.9e-28	61.02	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16850g PE=4 SV=1	[more]
B9S5Q4_RICCO	3.3e-28	61.86	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652420 PE=4 SV=1	[more]

BLAST of MELO3C025802 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203368\|gb\|KGN58501.1\|	4.7e-52	93.86	hypothetical protein Csa_3G651850 [Cucumis sativus]	[more]
gi\|643733854\|gb\|KDP40697.1\|	6.6e-30	63.87	hypothetical protein JCGZ_24696 [Jatropha curcas]	[more]
gi\|645243894\|ref\|XP_008228186.1\|	2.5e-29	61.34	PREDICTED: uncharacterized protein LOC103327624 [Prunus mume]	[more]
gi\|595974543\|ref\|XP_007217775.1\|	4.3e-29	60.33	hypothetical protein PRUPE_ppa016854mg [Prunus persica]	[more]
gi\|645244285\|ref\|XP_008228360.1\|	4.3e-29	60.00	PREDICTED: uncharacterized protein LOC103327771 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025802T1	MELO3C025802T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 1..114 score: 3.3
None	No IPR available	PANTHER	PTHR35758:SF1	SUBFAMILY NOT NAMED	coord: 1..114 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025802	Csa3G651850	Cucumber (Chinese Long) v2	cumeB216
MELO3C025802	Cla012576	Watermelon (97103) v1	mewmB363
MELO3C025802	ClCG07G014110	Watermelon (Charleston Gray)	mewcgB342
MELO3C025802	Cla97C07G140890	Watermelon (97103) v2	mewmbB345
MELO3C025802	Bhi01G002189	Wax gourd	mewgoB392
MELO3C025802	CSPI03G28910	Wild cucumber (PI 183967)	cpimeB222
MELO3C025802	CmaCh14G012340	Cucurbita maxima (Rimu)	cmameB230
MELO3C025802	Lsi07G006210	Bottle gourd (USVL1VR-Ls)	lsimeB436
MELO3C025802	Cp4.1LG03g14620	Cucurbita pepo (Zucchini)	cpemeB575
MELO3C025802	CsaV3_UNG227960	Cucumber (Chinese Long) v3	cucmeB093

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025802	Cucurbita pepo (Zucchini)	cpemeB520
MELO3C025802	Cucumber (Gy14) v2	cgybmeB191
MELO3C025802	Silver-seed gourd	carmeB0126
MELO3C025802	Silver-seed gourd	carmeB0205
MELO3C025802	Cucumber (Chinese Long) v3	cucmeB225
MELO3C025802	Cucumber (Gy14) v1	cgymeB349
MELO3C025802	Cucurbita maxima (Rimu)	cmameB429
MELO3C025802	Cucurbita moschata (Rifu)	cmomeB218
MELO3C025802	Cucurbita moschata (Rifu)	cmomeB419