CSPI03G28910 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28910
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Serine rich protein
Location	Chr3 : 26465013 .. 26465533 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGTTTCCCCATCTAGTTTTTGCTAACATCAAGCAGCAACTCCTTTTGTTTTTTTCTTTTGAGAAGACCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGAGAACCAAAACCCACTTGAATTTTTAATTTTGTTTGACTTATAAACTTGTATTGTTGCCACCTGATATGGATTAGAAATTTAAAGTGCATTGATCTCGGC

mRNA sequence

ATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Coding sequence (CDS)

ATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Homology

[Close]

BLAST of CSPI03G28910 vs. TrEMBL
Match: A0A0A0LEN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.8e-54
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60
           MDSNYSAYANQNSSQRPLAI LALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of CSPI03G28910 vs. TrEMBL
Match: A0A067KX22_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24696 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.4e-31
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1


Query: 5   YSAYANQNSSQRPLAIVLALASAVVLSPL---------RSYETSWSSGFVVPLVLLGLIV 64
           Y+ Y++QNSSQR LA+VLAL SAVVLSPL         R YET WSSGFV+P+VL GLI+
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 65  AIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           AI+T+S+ SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

[Close]

BLAST of CSPI03G28910 vs. TrEMBL
Match: M5WZ95_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016854mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1


Query: 7   AYANQNSSQRPLAIVLALASAVVLSPL---------RSYETSWSSGFVVPLVLLGLIVAI 66
           AY + +SSQR  A+VLAL SA+VLSPL         R YET WSSGFV+P+VL GLI+AI
Sbjct: 7   AYTSHSSSQRSTAMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSSCSSTSRDS----AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLW 115
           KT+SS SS+S  S    + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLW
Sbjct: 67  KTTSSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLW 126

[Close]

BLAST of CSPI03G28910 vs. TrEMBL
Match: B9GKT9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16850g PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 78/123 (63.41%), Postives = 94/123 (76.42%), Query Frame = 1


Query: 5   YSAYANQNSSQRPLAIVLALASAVVLSPLR-----------SYETSWSSGFVVPLVLLGL 64
           YSA A++NSSQR LA+VLALASAVVLSPL            ++ET WSSGFV+P+VL GL
Sbjct: 6   YSA-ASRNSSQRALAMVLALASAVVLSPLYVKRKNDHTGYFNHETKWSSGFVLPMVLAGL 65

Query: 65  IVAIKTSSSCSSTSRDSA--ILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEF 115
           I+AI+T+SS  S  R +A   +PS  PSWVL+IGSSSWGLAG+L+ML+L LSWQ SVQEF
Sbjct: 66  IIAIRTTSSSMSVHRGAAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEF 125

[Close]

BLAST of CSPI03G28910 vs. TrEMBL
Match: U5GPU7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06410g PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-29
Identity = 76/122 (62.30%), Postives = 91/122 (74.59%), Query Frame = 1


Query: 6   SAYANQNSSQRPLAIVLALASAVVLSPLR-----------SYETSWSSGFVVPLVLLGLI 65
           S+ A+QNSSQR LA+V ALASAVVLSPL            +YET WSSGFV+P+VL GLI
Sbjct: 7   SSTASQNSSQRVLAMVFALASAVVLSPLYVKRKNDHTRYFNYETKWSSGFVLPMVLAGLI 66

Query: 66  VAIKTSSSCSSTSRDS--AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFL 115
           +AI+T+SS  S  R S  + +PS  PSWVL+IGSS WGLAG+L+ML+L LSWQ SVQEF 
Sbjct: 67  IAIRTTSSSMSARRGSRASFIPSPDPSWVLRIGSSPWGLAGVLVMLMLVLSWQDSVQEFF 126

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: gi|700203368|gb|KGN58501.1| (hypothetical protein Csa_3G651850 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60
           MDSNYSAYANQNSSQRPLAI LALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: gi|643733854|gb|KDP40697.1| (hypothetical protein JCGZ_24696 [Jatropha curcas])

HSP 1 Score: 141.7 bits (356), Expect = 7.8e-31
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 1


Query: 5   YSAYANQNSSQRPLAIVLALASAVVLSPL---------RSYETSWSSGFVVPLVLLGLIV 64
           Y+ Y++QNSSQR LA+VLAL SAVVLSPL         R YET WSSGFV+P+VL GLI+
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 65  AIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           AI+T+S+ SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: gi|645243894|ref|XP_008228186.1| (PREDICTED: uncharacterized protein LOC103327624 [Prunus mume])

HSP 1 Score: 138.3 bits (347), Expect = 8.6e-30
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 7   AYANQNSSQRPLAIVLALASAVVLSPL---------RSYETSWSSGFVVPLVLLGLIVAI 66
           AY + +SSQR  A+VLAL SA+VLSPL         R YET WSSGFV+P+VL GLI+AI
Sbjct: 7   AYTSHSSSQRSTAMVLALVSAIVLSPLYVTNRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KT--SSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           KT  SSS SS+S+  + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLWR
Sbjct: 67  KTTSSSSSSSSSQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 125

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: gi|595974543|ref|XP_007217775.1| (hypothetical protein PRUPE_ppa016854mg [Prunus persica])

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-29
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1


Query: 7   AYANQNSSQRPLAIVLALASAVVLSPL---------RSYETSWSSGFVVPLVLLGLIVAI 66
           AY + +SSQR  A+VLAL SA+VLSPL         R YET WSSGFV+P+VL GLI+AI
Sbjct: 7   AYTSHSSSQRSTAMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSSCSSTSRDS----AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLW 115
           KT+SS SS+S  S    + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLW
Sbjct: 67  KTTSSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLW 126

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: gi|645244285|ref|XP_008228360.1| (PREDICTED: uncharacterized protein LOC103327771 [Prunus mume])

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-29
Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 1


Query: 7   AYANQNSSQRPLAIVLALASAVVLSPL---------RSYETSWSSGFVVPLVLLGLIVAI 66
           AY + +SSQR  A+VLAL SA+VLSPL         R YET WSSGFV+P+VL GLI+AI
Sbjct: 7   AYTSHSSSQRSTAVVLALVSAIVLSPLYVTSRKTDARYYETKWSSGFVLPMVLAGLIIAI 66

Query: 67  KTSSSCSSTSRDS---AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           KT+SS SS+S  +   + +PS  PSWVL+IGSSSWGLAG+L++L+L LSWQ SV EFLWR
Sbjct: 67  KTTSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 126

The following BLAST results are available for this feature:

BLAST of CSPI03G28910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G28910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEN3_CUCSA	7.8e-54	99.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651850 PE=4 SV=1	[more]
A0A067KX22_JATCU	5.4e-31	64.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24696 PE=4 SV=1	[more]
M5WZ95_PRUPE	1.0e-29	61.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016854mg PE=4 SV=1	[more]
B9GKT9_POPTR	1.3e-29	63.41	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16850g PE=4 SV=1	[more]
U5GPU7_POPTR	3.0e-29	62.30	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06410g PE=4 SV=1	[more]

BLAST of CSPI03G28910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G28910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203368\|gb\|KGN58501.1\|	1.1e-53	99.12	hypothetical protein Csa_3G651850 [Cucumis sativus]	[more]
gi\|643733854\|gb\|KDP40697.1\|	7.8e-31	64.71	hypothetical protein JCGZ_24696 [Jatropha curcas]	[more]
gi\|645243894\|ref\|XP_008228186.1\|	8.6e-30	63.03	PREDICTED: uncharacterized protein LOC103327624 [Prunus mume]	[more]
gi\|595974543\|ref\|XP_007217775.1\|	1.5e-29	61.98	hypothetical protein PRUPE_ppa016854mg [Prunus persica]	[more]
gi\|645244285\|ref\|XP_008228360.1\|	1.5e-29	61.67	PREDICTED: uncharacterized protein LOC103327771 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28910.1	CSPI03G28910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 1..114 score: 2.1
None	No IPR available	PANTHER	PTHR35758:SF1	SUBFAMILY NOT NAMED	coord: 1..114 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G28910	Cla012576	Watermelon (97103) v1	cpiwmB216
CSPI03G28910	Csa3G651850	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G28910	MELO3C025802	Melon (DHL92) v3.5.1	cpimeB222
CSPI03G28910	ClCG07G014110	Watermelon (Charleston Gray)	cpiwcgB262
CSPI03G28910	Lsi07G006210	Bottle gourd (USVL1VR-Ls)	cpilsiB232
CSPI03G28910	MELO3C025802.2	Melon (DHL92) v3.6.1	cpimedB216
CSPI03G28910	CsaV3_UNG227960	Cucumber (Chinese Long) v3	cpicucB133
CSPI03G28910	Cla97C07G140890	Watermelon (97103) v2	cpiwmbB248
CSPI03G28910	Bhi01G002189	Wax gourd	cpiwgoB288
CSPI03G28910	CmaCh14G012340	Cucurbita maxima (Rimu)	cmacpiB245
CSPI03G28910	Cp4.1LG03g14620	Cucurbita pepo (Zucchini)	cpecpiB603

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G28910	Cucumber (Gy14) v1	cgycpiB303
CSPI03G28910	Cucurbita maxima (Rimu)	cmacpiB450
CSPI03G28910	Cucurbita maxima (Rimu)	cmacpiB456
CSPI03G28910	Cucurbita moschata (Rifu)	cmocpiB231
CSPI03G28910	Cucurbita moschata (Rifu)	cmocpiB234
CSPI03G28910	Cucurbita moschata (Rifu)	cmocpiB438
CSPI03G28910	Cucurbita pepo (Zucchini)	cpecpiB546
CSPI03G28910	Cucurbita pepo (Zucchini)	cpecpiB561
CSPI03G28910	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G28910	Silver-seed gourd	carcpiB0130
CSPI03G28910	Silver-seed gourd	carcpiB0230
CSPI03G28910	Silver-seed gourd	carcpiB0850
CSPI03G28910	Cucumber (Chinese Long) v3	cpicucB144