CmaCh14G012340 (gene) Cucurbita maxima (Rimu)

NameCmaCh14G012340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSerine rich protein
LocationCma_Chr14 : 9783894 .. 9785666 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCAAAGAACACAAGCTGGGTATGGACAGATTGAAGCTTCACGACAAGTCTCTAACTTGGAAAAAGAATTTGCATTTGGAATTCCCCAAAGAACAAGACAGGGCTTGTTTAGGTTCGTTTGTTTGGATGTCCAGAATTGCATTGTTGTGTCGTTGTCATCTCAAACGTGGCTTGGCGACAAGTTGCAGAGCCTGAAGGTGAGCTTCCACCATGTTTTGAGTATTGAAATGGCGAGAGAGAGAATGAGATGCTAACGGAATAAGATAAAGGGAAATGGGAAATTAAAAATGGAAGAGAAAGAAGGAGAAGACATTGGAGCTGATATCATTTGCGAGAGAAACAGAGTGATGTGTATGAAAAACAGGGGTTTTGTGTTCACAAGGAGAGTGGTATGTGTAACTGCTGAAAAGGAGCAAGGTTGAGTAGGGAAAAGGGTTGTGACGTTATTCAAGTGATATTAAGAAAAATGGAGTCTGTGTTGAATTAGAGAAGGAAACAGAACATTATTCATAAGGGTGTGAAAATCTTTTCCTAATAAACGCATTTTAAAATTGTGAAGTTGATGACGATACGTAACGGGACAAAATGGACAATATCTATTAGTAATGGGTTTGGGTTGTTACAAATAATATTAGAGCTAGATACTAGGCGGTGTGCCAGCGAGGACGCTAGCCCCCAAAGAAGTAGATTGTAAGATCTTATGTTGGTTGGAGATGAGAACAAATCATTTCTCGAAAGGGTGTGGAAACCTTTTACTAGCAGACGCATTTAAAAACTGTGGAGCTAAGCGATGCGTAACGGGTCAAAACGAACAACATCTGGGCCTCCAAGTGGGCCTCCAACCACATTAGTTTGAGAGAGAAACGAAATATTTCTGATAATGGTGAGGTTTCGGTCCCCAAGTGGACCCCCAACTACATTGGTTTGAGAGAGAAACGAAACATTTCTTATAAGAGTGTTGAAACCTCTCCCTACCAGATAAGTTTTAAAATTGTGAGGCTAACGACAATACATTACGGACAAAAACAGACAAAATATATTAGCGATGACCTTGAATTGTTATAGTATAGTTACTTATAGTTGTTACCATACAAATTCTAGTCATGAAATTTAAAGTTATAATTTTTTTTTACATACGTCTAAAAGTGATGTATACTATTATATTGGCAATGAAAAGATACCTTACTTCCAGACCGAGACAACACTTTTCCCCTGCCCATATATATACTTTTGCAATCTTTTTTACAATTGTAGTTCGTTCACTTTTTCACTTTTAAGACAGCCATGCTCGTCTGATAAGAGCCTTTCCACATAGATTCCTTAACCCATGCCACCATTTTCCTCCATATAAATCTCTTGTTTCCCATCTGGCTTTTGCTCAACAAGCAACTCTTCTTCATAAAACTCAAAACCATGGATAGTAACCATGGCGCTTACACGAACCAGATCCGTCTCAGATACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCGACTGGTTCTTTTGGTGCTTATAATTGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACGGAAGGGAGAGAGATTCTGCAATTCTCTCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTATGTTAAAGAATTCCTCTGGAGATAG

mRNA sequence

ATGCCCCAAAGAACACAAGCTGGGTATGGACAGATTGAAGCTTCACGACAAGTCTCTAACTTGGAAAAAGAATTTGCATTTGGAATTCCCCAAAGAACAAGACAGGGCTTGTTTAGGTTCGTTTGTTTGGATGTCCAGAATTGCATTGTTGTGTCGTTGTCATCTCAAACGTGGCTTGGCGACAAGTTGCAGAGCCTGAAGATACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCGACTGGTTCTTTTGGTGCTTATAATTGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACGGAAGGGAGAGAGATTCTGCAATTCTCTCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTATGTTAAAGAATTCCTCTGGAGATAG

Coding sequence (CDS)

ATGCCCCAAAGAACACAAGCTGGGTATGGACAGATTGAAGCTTCACGACAAGTCTCTAACTTGGAAAAAGAATTTGCATTTGGAATTCCCCAAAGAACAAGACAGGGCTTGTTTAGGTTCGTTTGTTTGGATGTCCAGAATTGCATTGTTGTGTCGTTGTCATCTCAAACGTGGCTTGGCGACAAGTTGCAGAGCCTGAAGATACCACTGGCCATCGTCTTGGCTCTTGCTTCTGCTGTGGTGCTTTCACCATTAAGACCTTATGAATCCAGATGGAGCTCTGGATTTGTTCTTCGACTGGTTCTTTTGGTGCTTATAATTGCCATTAAGACATCTTCGTCTTGCTCATCCATGTCCACGGACGGAAGGGAGAGAGATTCTGCAATTCTCTCGTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCCTGGGGACTTGCAGGGCTTTTAATGATGTTGATTTTCGGGCTTTCTTGGCAGAGTTATGTTAAAGAATTCCTCTGGAGATAG

Protein sequence

MPQRTQAGYGQIEASRQVSNLEKEFAFGIPQRTRQGLFRFVCLDVQNCIVVSLSSQTWLGDKLQSLKIPLAIVLALASAVVLSPLRPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMSTDGRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR
BLAST of CmaCh14G012340 vs. TrEMBL
Match: A0A0A0LEN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-32
Identity = 83/103 (80.58%), Postives = 88/103 (85.44%), Query Frame = 1

Query: 69  PLAIVLALASAVVLSPLRPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMSTDGRERDSA 128
           PLAI LALASAVVLSPLR YE+ WSSGFV+ LVLL LI+AIKTSSSCSS S     RDSA
Sbjct: 17  PLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTS-----RDSA 76

Query: 129 ILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
           IL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQS V+EFLWR
Sbjct: 77  ILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of CmaCh14G012340 vs. TrEMBL
Match: M5WZ95_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016854mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 66/109 (60.55%), Postives = 81/109 (74.31%), Query Frame = 1

Query: 71  AIVLALASAVVLSPL---------RPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMSTD 130
           A+VLAL SA+VLSPL         R YE++WSSGFVL +VL  LIIAIKT+SS SS S+ 
Sbjct: 19  AMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAIKTTSSSSSSSSS 78

Query: 131 GRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
             + DS + S +PSWVL+IGSSSWGLAG+L++L+  LSWQ  V EFLWR
Sbjct: 79  STQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 127

BLAST of CmaCh14G012340 vs. TrEMBL
Match: U5GPU7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06410g PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-21
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 1

Query: 70  LAIVLALASAVVLSPLRP-----------YESRWSSGFVLRLVLLVLIIAIKTSSSCSSM 129
           LA+V ALASAVVLSPL             YE++WSSGFVL +VL  LIIAI+T+SS  SM
Sbjct: 19  LAMVFALASAVVLSPLYVKRKNDHTRYFNYETKWSSGFVLPMVLAGLIIAIRTTSS--SM 78

Query: 130 STDGRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
           S     R S I S DPSWVL+IGSS WGLAG+L+ML+  LSWQ  V+EF WR
Sbjct: 79  SARRGSRASFIPSPDPSWVLRIGSSPWGLAGVLVMLMLVLSWQDSVQEFFWR 128

BLAST of CmaCh14G012340 vs. TrEMBL
Match: B9GKT9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16850g PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-21
Identity = 67/112 (59.82%), Postives = 79/112 (70.54%), Query Frame = 1

Query: 70  LAIVLALASAVVLSPLRP-----------YESRWSSGFVLRLVLLVLIIAIKTSSSCSSM 129
           LA+VLALASAVVLSPL             +E++WSSGFVL +VL  LIIAI+T+SS  SM
Sbjct: 18  LAMVLALASAVVLSPLYVKRKNDHTGYFNHETKWSSGFVLPMVLAGLIIAIRTTSS--SM 77

Query: 130 STDGRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
           S       S I S DPSWVL+IGSSSWGLAG+L+ML+  LSWQ  V+EF WR
Sbjct: 78  SVHRGAAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEFFWR 127

BLAST of CmaCh14G012340 vs. TrEMBL
Match: A0A067KX22_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24696 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-21
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 1

Query: 70  LAIVLALASAVVLSPL---------RPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMST 129
           LA+VLAL SAVVLSPL         R YE++WSSGFVL +VL  LIIAI+T+S+ S    
Sbjct: 17  LALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLIIAIRTTSTSSV--- 76

Query: 130 DGRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
             + R+S I   DPSWVL+IGSSSWGLAG+L+ML+  LSWQ  V+EF WR
Sbjct: 77  --QRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

BLAST of CmaCh14G012340 vs. NCBI nr
Match: gi|700203368|gb|KGN58501.1| (hypothetical protein Csa_3G651850 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 83/103 (80.58%), Postives = 88/103 (85.44%), Query Frame = 1

Query: 69  PLAIVLALASAVVLSPLRPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMSTDGRERDSA 128
           PLAI LALASAVVLSPLR YE+ WSSGFV+ LVLL LI+AIKTSSSCSS S     RDSA
Sbjct: 17  PLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTS-----RDSA 76

Query: 129 ILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
           IL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQS V+EFLWR
Sbjct: 77  ILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of CmaCh14G012340 vs. NCBI nr
Match: gi|595974543|ref|XP_007217775.1| (hypothetical protein PRUPE_ppa016854mg [Prunus persica])

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 66/109 (60.55%), Postives = 81/109 (74.31%), Query Frame = 1

Query: 71  AIVLALASAVVLSPL---------RPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMSTD 130
           A+VLAL SA+VLSPL         R YE++WSSGFVL +VL  LIIAIKT+SS SS S+ 
Sbjct: 19  AMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGLIIAIKTTSSSSSSSSS 78

Query: 131 GRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
             + DS + S +PSWVL+IGSSSWGLAG+L++L+  LSWQ  V EFLWR
Sbjct: 79  STQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 127

BLAST of CmaCh14G012340 vs. NCBI nr
Match: gi|645244285|ref|XP_008228360.1| (PREDICTED: uncharacterized protein LOC103327771 [Prunus mume])

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 66/109 (60.55%), Postives = 81/109 (74.31%), Query Frame = 1

Query: 71  AIVLALASAVVLSPL---------RPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMSTD 130
           A+VLAL SA+VLSPL         R YE++WSSGFVL +VL  LIIAIKT+SS SS S+ 
Sbjct: 19  AVVLALVSAIVLSPLYVTSRKTDARYYETKWSSGFVLPMVLAGLIIAIKTTSSSSS-SSS 78

Query: 131 GRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
             + DS + S +PSWVL+IGSSSWGLAG+L++L+  LSWQ  V EFLWR
Sbjct: 79  STQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 126

BLAST of CmaCh14G012340 vs. NCBI nr
Match: gi|645243894|ref|XP_008228186.1| (PREDICTED: uncharacterized protein LOC103327624 [Prunus mume])

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-22
Identity = 66/109 (60.55%), Postives = 81/109 (74.31%), Query Frame = 1

Query: 71  AIVLALASAVVLSPL---------RPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMSTD 130
           A+VLAL SA+VLSPL         R YE++WSSGFVL +VL  LIIAIKT+SS SS S+ 
Sbjct: 19  AMVLALVSAIVLSPLYVTNRKTDARYYETKWSSGFVLPMVLAGLIIAIKTTSSSSSSSSS 78

Query: 131 GRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
             + DS + S +PSWVL+IGSSSWGLAG+L++L+  LSWQ  V EFLWR
Sbjct: 79  --QGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEFLWR 125

BLAST of CmaCh14G012340 vs. NCBI nr
Match: gi|694400831|ref|XP_009375493.1| (PREDICTED: uncharacterized protein LOC103964298 [Pyrus x bretschneideri])

HSP 1 Score: 112.8 bits (281), Expect = 5.7e-22
Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 1

Query: 70  LAIVLALASAVVLSPL----------RPYESRWSSGFVLRLVLLVLIIAIKTSSSCSSMS 129
           +A+VLAL SA+VLSP+          R +E++WSSGFVL ++L  LIIAIKT+SS SS S
Sbjct: 23  VAMVLALVSAIVLSPIYTNPRKSSDARYHEAKWSSGFVLPMILAGLIIAIKTTSSSSSSS 82

Query: 130 T----DGRERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSYVKEFLWR 171
           +          S+I SSDPSWVL+IGSSSWGLAG+L+ML+F LSWQ  V EFLWR
Sbjct: 83  SASSLSSTRGYSSIPSSDPSWVLRIGSSSWGLAGVLVMLMFVLSWQGSVHEFLWR 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LEN3_CUCSA5.6e-3280.58Uncharacterized protein OS=Cucumis sativus GN=Csa_3G651850 PE=4 SV=1[more]
M5WZ95_PRUPE1.2e-2360.55Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016854mg PE=4 SV=1[more]
U5GPU7_POPTR7.5e-2159.82Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06410g PE=4 SV=1[more]
B9GKT9_POPTR7.5e-2159.82Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16850g PE=4 SV=1[more]
A0A067KX22_JATCU7.5e-2159.09Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24696 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700203368|gb|KGN58501.1|8.0e-3280.58hypothetical protein Csa_3G651850 [Cucumis sativus][more]
gi|595974543|ref|XP_007217775.1|1.8e-2360.55hypothetical protein PRUPE_ppa016854mg [Prunus persica][more]
gi|645244285|ref|XP_008228360.1|1.5e-2260.55PREDICTED: uncharacterized protein LOC103327771 [Prunus mume][more]
gi|645243894|ref|XP_008228186.1|4.4e-2260.55PREDICTED: uncharacterized protein LOC103327624 [Prunus mume][more]
gi|694400831|ref|XP_009375493.1|5.7e-2258.26PREDICTED: uncharacterized protein LOC103964298 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G012340.1CmaCh14G012340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35758FAMILY NOT NAMEDcoord: 70..170
score: 1.7
NoneNo IPR availablePANTHERPTHR35758:SF1SUBFAMILY NOT NAMEDcoord: 70..170
score: 1.7

The following gene(s) are paralogous to this gene:

None