CsaV3_UNG227960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG227960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTranscription initiation factor tfiid subunit 9
Locationscaffold114 : 123274 .. 123628 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTTTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

mRNA sequence

CCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTTTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Coding sequence (CDS)

CCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTTTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Protein sequence

PKIMDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Homology
[Close]
BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: KGN58501.1 (hypothetical protein Csa_3G651850 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 2.0e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63
           MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 64  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]
BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: KDP40697.1 (hypothetical protein JCGZ_24696 [Jatropha curcas])

HSP 1 Score: 140.2 bits (352), Expect = 4.5e-30
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 8   YSAYANQNSSQRPLAIFLALASAVVLSP---------LRSYETSWSSGFVVPLVLLGLIV 67
           Y+ Y++QNSSQR LA+ LAL SAVVLSP         LR YET WSSGFV+P+VL GLI+
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 68  AIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           AI+T+S+ SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

[Close]
BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: PNT44010.1 (hypothetical protein POPTR_003G065900v3 [Populus trichocarpa])

HSP 1 Score: 136.7 bits (343), Expect = 5.0e-29
Identity = 76/122 (62.30%), Postives = 91/122 (74.59%), Query Frame = 0 

Query: 9   SAYANQNSSQRPLAIFLALASAVVLSPLR-----------SYETSWSSGFVVPLVLLGLI 68
           S+ A+QNSSQR LA+  ALASAVVLSPL            +YET WSSGFV+P+VL GLI
Sbjct: 7   SSTASQNSSQRVLAMVFALASAVVLSPLYVKRKNDHTRYFNYETKWSSGFVLPMVLAGLI 66

Query: 69  VAIKTSSSCSSTSRDS--AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFL 118
           +AI+T+SS  S  R S  + +PS  PSWVL+IGSSSWGLAG+L+ML+L LSWQ SVQEF 
Sbjct: 67  IAIRTTSSSMSARRGSRASFIPSPDPSWVLRIGSSSWGLAGVLVMLMLVLSWQDSVQEFF 126

[Close]
BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: PNT55005.1 (hypothetical protein POPTR_001G168400v3 [Populus trichocarpa])

HSP 1 Score: 136.0 bits (341), Expect = 8.5e-29
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = 0 

Query: 8   YSAYANQNSSQRPLAIFLALASAVVLSPLR-----------SYETSWSSGFVVPLVLLGL 67
           YSA A++NSSQR LA+ LALASAVVLSPL            ++ET WSSGFV+P+VL GL
Sbjct: 6   YSA-ASRNSSQRALAMVLALASAVVLSPLYVKRKNDHTGYFNHETKWSSGFVLPMVLAGL 65

Query: 68  IVAIKTSSSCSSTSRDSA--ILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEF 118
           I+AI+T+SS  S  R +A   +PS  PSWVL+IGSSSWGLAG+L+ML+L LSWQ SVQEF
Sbjct: 66  IIAIRTTSSSMSVHRGAAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEF 125

[Close]
BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: XP_002521323.1 (uncharacterized protein LOC8284647 [Ricinus communis] >EEF40991.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-28
Identity = 75/120 (62.50%), Postives = 92/120 (76.67%), Query Frame = 0 

Query: 9   SAYANQNSSQRPLAIFLALASAVVLSPL--------RSYETS-WSSGFVVPLVLLGLIVA 68
           S Y +QNSSQR LA+ LAL SAVVLSPL        R YET  W+SGFV+P+VL GLI+A
Sbjct: 4   STYTSQNSSQRALAMVLALVSAVVLSPLYVQRRNDMRFYETKYWNSGFVLPVVLGGLIIA 63

Query: 69  IKTSSSCSSTS--RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           I+T+SS SSTS     +++P+  PSWVL+IGSSSWGLAGI++ML+L LSWQ SVQEF W+
Sbjct: 64  IRTTSSSSSTSLGATGSLIPTPDPSWVLRIGSSSWGLAGIIVMLMLVLSWQESVQEFFWK 123

[Close]
BLAST of CsaV3_UNG227960 vs. TrEMBL
Match: tr|A0A0A0LEN3|A0A0A0LEN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63
           MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 64  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]
BLAST of CsaV3_UNG227960 vs. TrEMBL
Match: tr|A0A067KX22|A0A067KX22_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-30
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 8   YSAYANQNSSQRPLAIFLALASAVVLSP---------LRSYETSWSSGFVVPLVLLGLIV 67
           Y+ Y++QNSSQR LA+ LAL SAVVLSP         LR YET WSSGFV+P+VL GLI+
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 68  AIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           AI+T+S+ SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

[Close]
BLAST of CsaV3_UNG227960 vs. TrEMBL
Match: tr|A0A2N9IBH6|A0A2N9IBH6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.7e-30
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 11  YANQNSSQRPLAIFLALASAVVLSPLRS--------YETSWSSGFVVPLVLLGLIVAIKT 70
           Y  Q SSQR +A+ L+L SA+VLSPL +        YET WSSGFV+P+VL+GLI+AI+T
Sbjct: 6   YTGQYSSQRSVAMVLSLVSAIVLSPLYARRKNDTSYYETKWSSGFVLPMVLVGLIIAIRT 65

Query: 71  SSSCSSTSRD----SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           +SSCSS S      ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ+SVQEF WR
Sbjct: 66  TSSCSSMSAQGGARASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQASVQEFFWR 124

[Close]
BLAST of CsaV3_UNG227960 vs. TrEMBL
Match: tr|A0A2K2B2K4|A0A2K2B2K4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G065900v3 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.3e-29
Identity = 76/122 (62.30%), Postives = 91/122 (74.59%), Query Frame = 0 

Query: 9   SAYANQNSSQRPLAIFLALASAVVLSPLR-----------SYETSWSSGFVVPLVLLGLI 68
           S+ A+QNSSQR LA+  ALASAVVLSPL            +YET WSSGFV+P+VL GLI
Sbjct: 7   SSTASQNSSQRVLAMVFALASAVVLSPLYVKRKNDHTRYFNYETKWSSGFVLPMVLAGLI 66

Query: 69  VAIKTSSSCSSTSRDS--AILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFL 118
           +AI+T+SS  S  R S  + +PS  PSWVL+IGSSSWGLAG+L+ML+L LSWQ SVQEF 
Sbjct: 67  IAIRTTSSSMSARRGSRASFIPSPDPSWVLRIGSSSWGLAGVLVMLMLVLSWQDSVQEFF 126

[Close]
BLAST of CsaV3_UNG227960 vs. TrEMBL
Match: tr|B9GKT9|B9GKT9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G168400v3 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.6e-29
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = 0 

Query: 8   YSAYANQNSSQRPLAIFLALASAVVLSPLR-----------SYETSWSSGFVVPLVLLGL 67
           YSA A++NSSQR LA+ LALASAVVLSPL            ++ET WSSGFV+P+VL GL
Sbjct: 6   YSA-ASRNSSQRALAMVLALASAVVLSPLYVKRKNDHTGYFNHETKWSSGFVLPMVLAGL 65

Query: 68  IVAIKTSSSCSSTSRDSA--ILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEF 118
           I+AI+T+SS  S  R +A   +PS  PSWVL+IGSSSWGLAG+L+ML+L LSWQ SVQEF
Sbjct: 66  IIAIRTTSSSMSVHRGAAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEF 125

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG227960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58501.12.0e-54100.00hypothetical protein Csa_3G651850 [Cucumis sativus][more]
KDP40697.14.5e-3063.87hypothetical protein JCGZ_24696 [Jatropha curcas][more]
PNT44010.15.0e-2962.30hypothetical protein POPTR_003G065900v3 [Populus trichocarpa][more]
PNT55005.18.5e-2962.60hypothetical protein POPTR_001G168400v3 [Populus trichocarpa][more]
XP_002521323.13.2e-2862.50uncharacterized protein LOC8284647 [Ricinus communis] >EEF40991.1 conserved hypo... [more]
BLAST of CsaV3_UNG227960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG227960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG227960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEN3|A0A0A0LEN3_CUCSA1.3e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1[more]
tr|A0A067KX22|A0A067KX22_JATCU3.0e-3063.87Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1[more]
tr|A0A2N9IBH6|A0A2N9IBH6_FAGSY6.7e-3062.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1[more]
tr|A0A2K2B2K4|A0A2K2B2K4_POPTR3.3e-2962.30Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G065900v3 PE=... [more]
tr|B9GKT9|B9GKT9_POPTR5.6e-2962.60Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G168400v3 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG227960.1CsaV3_UNG227960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35758:SF1SUBFAMILY NOT NAMEDcoord: 4..117
NoneNo IPR availablePANTHERPTHR35758FAMILY NOT NAMEDcoord: 4..117

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_UNG227960CSPI03G28910Wild cucumber (PI 183967)cpicucB133
CsaV3_UNG227960CmaCh14G012340Cucurbita maxima (Rimu)cmacucB0275
CsaV3_UNG227960Cp4.1LG03g14620Cucurbita pepo (Zucchini)cpecucB0743
CsaV3_UNG227960Cla012576Watermelon (97103) v1cucwmB110
CsaV3_UNG227960MELO3C025802Melon (DHL92) v3.5.1cucmeB093
CsaV3_UNG227960ClCG07G014110Watermelon (Charleston Gray)cucwcgB103
CsaV3_UNG227960Lsi07G006210Bottle gourd (USVL1VR-Ls)cuclsiB097
CsaV3_UNG227960MELO3C025802.2Melon (DHL92) v3.6.1cucmedB086
CsaV3_UNG227960Cla97C07G140890Watermelon (97103) v2cucwmbB096
CsaV3_UNG227960Bhi01G002189Wax gourdcucwgoB127
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_UNG227960Cucurbita pepo (Zucchini)cpecucB0671
CsaV3_UNG227960Silver-seed gourdcarcucB0222
CsaV3_UNG227960Cucumber (Chinese Long) v3cuccucB063