MELO3C025754 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025754
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionFormyltetrahydrofolate deformylase
Locationchr11 : 25701941 .. 25702632 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCAAGTAGAGTTAATCAAACACCGGAGGCCCTCAAAAAGCCCCAAAACCAAAACCCACATTCTCTACACTCTTTATTCTCTCTCCTCTTGTTCTTCCATTCTTTTCTCCTCCATCAAAGAACTAAAACCAATTCGTCATCATCATCATCTTCTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCGAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGTATTTCCCCTTAACCCTAACCAACTTTTCTCTTTCTCTTAATACATAATACACTCCTATTATCACGTTGCTCTGTTTTTTGAGTTGCAGGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAACAACATGAAATACAGGTATTTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAACCGACTTCATGATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAACAGAGTATCCATGATCTGGGTAATTTGGATTTGATATATTTTGTTAATTTTGATGTGGGTTTGTTTTTTATGTATTGTTCTTGTTTGATATGAAATGGGATTTGTTTTCTTTCATGTACTATGTTAAGAGATTGGGAAAAAATTTGACTGGTTATGAATGGGAATCTAGAAAAATTAAA

mRNA sequence

ACCCAAGTAGAGTTAATCAAACACCGGAGGCCCTCAAAAAGCCCCAAAACCAAAACCCACATTCTCTACACTCTTTATTCTCTCTCCTCTTGTTCTTCCATTCTTTTCTCCTCCATCAAAGAACTAAAACCAATTCGTCATCATCATCATCTTCTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCGAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAACAACATGAAATACAGGTATTTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAACCGACTTCATGATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAACAGAGTATCCATGATCTGGGTAATTTGGATTTGATATATTTTGTTAATTTTGATGTGGGTTTGTTTTTTATGTATTGTTCTTGTTTGATATGAAATGGGATTTGTTTTCTTTCATGTACTATGTTAAGAGATTGGGAAAAAATTTGACTGGTTATGAATGGGAATCTAGAAAAATTAAA

Coding sequence (CDS)

ATGCAGTCGAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAACAACATGAAATACAGGTATTTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAACCGACTTCATGATTTGTGCTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGDLEDFVNETDFMICAAKAA*
Homology
[Close]
BLAST of MELO3C025754 vs. TrEMBL
Match: A0A0A0KEP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-32
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1 

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RS+NMK+R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNETDFMICAAKAA 79
          LEDFVNE D MICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]
BLAST of MELO3C025754 vs. NCBI nr
Match: gi|700192105|gb|KGN47309.1| (hypothetical protein Csa_6G290900 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-32
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1 

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RS+NMK+R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNETDFMICAAKAA 79
          LEDFVNE D MICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

The following BLAST results are available for this feature:
BLAST of MELO3C025754 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEP9_CUCSA3.4e-3292.31Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1[more]
BLAST of MELO3C025754 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192105|gb|KGN47309.1|4.8e-3292.31hypothetical protein Csa_6G290900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU43918melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025754T1MELO3C025754T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU43918MU43918transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C025754Csa6G290900Cucumber (Chinese Long) v2cumeB428
MELO3C025754Cla000554Watermelon (97103) v1mewmB107
MELO3C025754ClCG02G021000Watermelon (Charleston Gray)mewcgB089
MELO3C025754Cla97C02G047010Watermelon (97103) v2mewmbB091
MELO3C025754Bhi10G000468Wax gourdmewgoB128
MELO3C025754CSPI06G16300Wild cucumber (PI 183967)cpimeB422
MELO3C025754CmoCh02G008770Cucurbita moschata (Rifu)cmomeB525
MELO3C025754Lsi10G012870Bottle gourd (USVL1VR-Ls)lsimeB055
MELO3C025754CsGy6G015820Cucumber (Gy14) v2cgybmeB370
MELO3C025754CsaV3_6G021690Cucumber (Chinese Long) v3cucmeB434
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025754Cucumber (Chinese Long) v3cucmeB009
MELO3C025754Cucumber (Chinese Long) v3cucmeB177
MELO3C025754Watermelon (97103) v2mewmbB086
MELO3C025754Watermelon (97103) v2mewmbB120
MELO3C025754Wax gourdmewgoB092
MELO3C025754Wax gourdmewgoB142
MELO3C025754Wax gourdmewgoB145
MELO3C025754Melon (DHL92) v3.5.1memeB037
MELO3C025754Melon (DHL92) v3.5.1memeB048
MELO3C025754Cucumber (Gy14) v1cgymeB034
MELO3C025754Cucumber (Gy14) v1cgymeB503
MELO3C025754Cucurbita maxima (Rimu)cmameB190
MELO3C025754Cucurbita maxima (Rimu)cmameB387
MELO3C025754Cucurbita maxima (Rimu)cmameB489
MELO3C025754Cucurbita maxima (Rimu)cmameB535
MELO3C025754Cucurbita moschata (Rifu)cmomeB177
MELO3C025754Cucurbita moschata (Rifu)cmomeB379
MELO3C025754Cucurbita moschata (Rifu)cmomeB481
MELO3C025754Cucurbita moschata (Rifu)cmomeB739
MELO3C025754Wild cucumber (PI 183967)cpimeB010
MELO3C025754Wild cucumber (PI 183967)cpimeB175
MELO3C025754Cucumber (Chinese Long) v2cumeB012
MELO3C025754Cucumber (Chinese Long) v2cumeB181
MELO3C025754Watermelon (Charleston Gray)mewcgB080
MELO3C025754Watermelon (Charleston Gray)mewcgB117
MELO3C025754Watermelon (97103) v1mewmB091
MELO3C025754Watermelon (97103) v1mewmB095
MELO3C025754Cucurbita pepo (Zucchini)cpemeB256
MELO3C025754Cucurbita pepo (Zucchini)cpemeB469
MELO3C025754Cucurbita pepo (Zucchini)cpemeB553
MELO3C025754Cucurbita pepo (Zucchini)cpemeB668
MELO3C025754Bottle gourd (USVL1VR-Ls)lsimeB173
MELO3C025754Bottle gourd (USVL1VR-Ls)lsimeB241
MELO3C025754Cucumber (Gy14) v2cgybmeB009
MELO3C025754Cucumber (Gy14) v2cgybmeB150
MELO3C025754Cucumber (Gy14) v2cgybmeB365
MELO3C025754Silver-seed gourdcarmeB0158
MELO3C025754Silver-seed gourdcarmeB0307
MELO3C025754Silver-seed gourdcarmeB0340
MELO3C025754Silver-seed gourdcarmeB0447
MELO3C025754Silver-seed gourdcarmeB0721