Csa6G290900 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G290900
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 14063862 .. 14064301 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGTATTTCCCCTTAACTCTAAACCAACTTTTCTCTTTCTCTTAACCCATAATACACTCCTATTATCACGTTGCTCTGTTTTTTGAGTTGCAGGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAAACAGAGTATCCATGATCTGGGTTTGGATTTGATATATGTTGTTAATTTTGGTATGGGTTTGTTTTTTTTTTTT

mRNA sequence

ATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAG

Coding sequence (CDS)

ATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGDLEDFVNENDLMICAAKAA*

Homology

[Close]

BLAST of Csa6G290900 vs. TrEMBL
Match: A0A0A0KEP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 79
          LEDFVNENDLMICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]

BLAST of Csa6G290900 vs. TrEMBL
Match: D7SKV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03210 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-06
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKH------------RLL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    H            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNENDLMICAAKAA 79
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

[Close]

BLAST of Csa6G290900 vs. NCBI nr
Match: gi|700192105|gb|KGN47309.1| (hypothetical protein Csa_6G290900 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 79
          LEDFVNENDLMICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]

BLAST of Csa6G290900 vs. NCBI nr
Match: gi|297746223|emb|CBI16279.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKH------------RLL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    H            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNENDLMICAAKAA 79
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

The following BLAST results are available for this feature:

BLAST of Csa6G290900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEP9_CUCSA	1.9e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1	[more]
D7SKV1_VITVI	3.2e-06	40.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03210 PE=4 SV=...	[more]

BLAST of Csa6G290900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192105\|gb\|KGN47309.1\|	2.7e-35	100.00	hypothetical protein Csa_6G290900 [Cucumis sativus]	[more]
gi\|297746223\|emb\|CBI16279.3\|	4.6e-06	40.70	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G290900.1	Csa6G290900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G290900	Cla000554	Watermelon (97103) v1	cuwmB515
Csa6G290900	MELO3C025754	Melon (DHL92) v3.5.1	cumeB428
Csa6G290900	ClCG02G021000	Watermelon (Charleston Gray)	cuwcgB440
Csa6G290900	Lsi10G012870	Bottle gourd (USVL1VR-Ls)	culsiB417
Csa6G290900	MELO3C025754.2	Melon (DHL92) v3.6.1	cumedB408
Csa6G290900	Cla97C02G047010	Watermelon (97103) v2	cuwmbB430
Csa6G290900	Bhi10G000468	Wax gourd	cuwgoB609
Csa6G290900	CSPI06G16300	Wild cucumber (PI 183967)	cpicuB313
Csa6G290900	CmoCh02G008770	Cucurbita moschata (Rifu)	cmocuB610
Csa6G290900	CsGy6G015820	Cucumber (Gy14) v2	cgybcuB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G290900	Wax gourd	cuwgoB528
Csa6G290900	Wax gourd	cuwgoB598
Csa6G290900	Cucumber (Chinese Long) v2	cucuB041
Csa6G290900	Cucumber (Chinese Long) v2	cucuB124
Csa6G290900	Cucumber (Chinese Long) v2	cucuB161
Csa6G290900	Cucumber (Gy14) v1	cgycuB036
Csa6G290900	Cucurbita maxima (Rimu)	cmacuB230
Csa6G290900	Cucurbita maxima (Rimu)	cmacuB557
Csa6G290900	Cucurbita maxima (Rimu)	cmacuB619
Csa6G290900	Cucurbita moschata (Rifu)	cmocuB216
Csa6G290900	Cucurbita moschata (Rifu)	cmocuB547
Csa6G290900	Melon (DHL92) v3.5.1	cumeB483
Csa6G290900	Watermelon (Charleston Gray)	cuwcgB463
Csa6G290900	Watermelon (97103) v1	cuwmB481
Csa6G290900	Watermelon (97103) v1	cuwmB451
Csa6G290900	Cucurbita pepo (Zucchini)	cpecuB294
Csa6G290900	Cucurbita pepo (Zucchini)	cpecuB745
Csa6G290900	Cucurbita pepo (Zucchini)	cpecuB755
Csa6G290900	Bottle gourd (USVL1VR-Ls)	culsiB408
Csa6G290900	Bottle gourd (USVL1VR-Ls)	culsiB440
Csa6G290900	Bottle gourd (USVL1VR-Ls)	culsiB443
Csa6G290900	Cucumber (Gy14) v2	cgybcuB046
Csa6G290900	Melon (DHL92) v3.6.1	cumedB463
Csa6G290900	Silver-seed gourd	carcuB0334
Csa6G290900	Silver-seed gourd	carcuB0336
Csa6G290900	Silver-seed gourd	carcuB0372
Csa6G290900	Watermelon (97103) v2	cuwmbB417
Csa6G290900	Watermelon (97103) v2	cuwmbB454