CmoCh02G008770 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G008770
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 5323013 .. 5323700 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGAAGTCTGAAAAAGCCCAAAAAAACCGTAAAGAAAGAAAATAAAAACCCATTCCTCAATTTTGCGTTCTTTGTAATCTCTTCTTTTCCCTCCCGAGAATTACAGATCTTCTTCGTCTCCTTCTTCTTCGTCTTCTTCTTCTTCTGCTTCGTCGTCGTACTGTGGAGAGAAATGCCGTCCAAGCTCGTCTCTCCAGGTCTTCCTCTCTGTCTTTCCGGCTTCTCTCTCTCTCATCGTCCTCTCTCTACAGAGTATGTTTCTTTAACCTTTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTTGTGCGAGTAAACTCTGTTTTGCTTTTGTGGTAGGATGGAAGATCATGATCGAAGGAGGGAAGCCATGAGAAGGCGAAGATCATCGAGTGCCGATACAGGAGGGATCGGCTTCACCAGATACATCATCCAAGCTATTGGAGATGGAGATCTTCATGATTTGTGTGAAAAAACCAAATTAACTTCGGCTGCAAAAGCCGCTTAGATTACGAAAACACTGTCCATGATTCCACAATCTCAACTTTTTTGTGTTGGTTTCGGATCTGTATTTTCATATTTTGTCAAAATCCTGATTTGGAGATTCATGTATTGTTCTCCTTTGTTTCCAACTTTACTGGATGGTTCAATGTAATCCTCTTCTAATTTTACTTTCCGAT

mRNA sequence

GGGGAAGTCTGAAAAAGCCCAAAAAAACCGTAAAGAAAGAAAATAAAAACCCATTCCTCAATTTTGCGTTCTTTGTAATCTCTTCTTTTCCCTCCCGAGAATTACAGATCTTCTTCGTCTCCTTCTTCTTCGTCTTCTTCTTCTTCTGCTTCGTCGTCGTACTGTGGAGAGAAATGCCGTCCAAGCTCGTCTCTCCAGGTCTTCCTCTCTGTCTTTCCGGCTTCTCTCTCTCTCATCGTCCTCTCTCTACAGAGATGGAAGATCATGATCGAAGGAGGGAAGCCATGAGAAGGCGAAGATCATCGAGTGCCGATACAGGAGGGATCGGCTTCACCAGATACATCATCCAAGCTATTGGAGATGGAGATCTTCATGATTTGTGTGAAAAAACCAAATTAACTTCGGCTGCAAAAGCCGCTTAGATTACGAAAACACTGTCCATGATTCCACAATCTCAACTTTTTTGTGTTGGTTTCGGATCTGTATTTTCATATTTTGTCAAAATCCTGATTTGGAGATTCATGTATTGTTCTCCTTTGTTTCCAACTTTACTGGATGGTTCAATGTAATCCTCTTCTAATTTTACTTTCCGAT

Coding sequence (CDS)

ATGCCGTCCAAGCTCGTCTCTCCAGGTCTTCCTCTCTGTCTTTCCGGCTTCTCTCTCTCTCATCGTCCTCTCTCTACAGAGATGGAAGATCATGATCGAAGGAGGGAAGCCATGAGAAGGCGAAGATCATCGAGTGCCGATACAGGAGGGATCGGCTTCACCAGATACATCATCCAAGCTATTGGAGATGGAGATCTTCATGATTTGTGTGAAAAAACCAAATTAACTTCGGCTGCAAAAGCCGCTTAG
Homology
[Close]
BLAST of CmoCh02G008770 vs. TrEMBL
Match: A0A0A0KEP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 

Query: 1  MPSKLVSPGLPLCLSGFSLSHRPLSTEMEDHDRRREAMRRRRSSSADTGGIGFTRYIIQA 60
          M SK+ S GLPLC+S F+LS+  LST++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSN-----MKHRLLEA 60

Query: 61 IGDGDLHDLC-EKTKLTSAAKAA 83
          I +GDL D   E   +  AAKAA
Sbjct: 61 IREGDLEDFVNENDLMICAAKAA 78

[Close]
BLAST of CmoCh02G008770 vs. NCBI nr
Match: gi|700192105|gb|KGN47309.1| (hypothetical protein Csa_6G290900 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 

Query: 1  MPSKLVSPGLPLCLSGFSLSHRPLSTEMEDHDRRREAMRRRRSSSADTGGIGFTRYIIQA 60
          M SK+ S GLPLC+S F+LS+  LST++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSN-----MKHRLLEA 60

Query: 61 IGDGDLHDLC-EKTKLTSAAKAA 83
          I +GDL D   E   +  AAKAA
Sbjct: 61 IREGDLEDFVNENDLMICAAKAA 78

The following BLAST results are available for this feature:
BLAST of CmoCh02G008770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G008770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEP9_CUCSA1.2e-0846.99Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1[more]
BLAST of CmoCh02G008770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G008770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192105|gb|KGN47309.1|1.7e-0846.99hypothetical protein Csa_6G290900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0009407 toxin catabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005839 proteasome core complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0004298 threonine-type endopeptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G008770.1CmoCh02G008770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G008770CmaCh02G008790Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G008770Csa6G290900Cucumber (Chinese Long) v2cmocuB610
CmoCh02G008770MELO3C025754Melon (DHL92) v3.5.1cmomeB525
CmoCh02G008770CSPI06G16300Wild cucumber (PI 183967)cmocpiB617
CmoCh02G008770Cp4.1LG05g08530Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G008770CsaV3_6G021690Cucumber (Chinese Long) v3cmocucB0731
CmoCh02G008770Carg20232Silver-seed gourdcarcmoB0421
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G008770Cucumber (Chinese Long) v3cmocucB0678
CmoCh02G008770Cucumber (Chinese Long) v3cmocucB0699
CmoCh02G008770Watermelon (97103) v2cmowmbB586
CmoCh02G008770Watermelon (97103) v2cmowmbB588
CmoCh02G008770Watermelon (97103) v2cmowmbB616
CmoCh02G008770Watermelon (97103) v2cmowmbB619
CmoCh02G008770Wax gourdcmowgoB0702
CmoCh02G008770Wax gourdcmowgoB0746
CmoCh02G008770Cucurbita moschata (Rifu)cmocmoB181
CmoCh02G008770Cucurbita moschata (Rifu)cmocmoB211
CmoCh02G008770Cucurbita moschata (Rifu)cmocmoB355
CmoCh02G008770Cucurbita moschata (Rifu)cmocmoB403
CmoCh02G008770Cucurbita moschata (Rifu)cmocmoB436
CmoCh02G008770Cucumber (Gy14) v1cgycmoB0056
CmoCh02G008770Cucumber (Gy14) v1cgycmoB0840
CmoCh02G008770Cucurbita maxima (Rimu)cmacmoB233
CmoCh02G008770Cucurbita maxima (Rimu)cmacmoB476
CmoCh02G008770Cucurbita maxima (Rimu)cmacmoB553
CmoCh02G008770Cucurbita maxima (Rimu)cmacmoB822
CmoCh02G008770Wild cucumber (PI 183967)cmocpiB574
CmoCh02G008770Wild cucumber (PI 183967)cmocpiB594
CmoCh02G008770Cucumber (Chinese Long) v2cmocuB570
CmoCh02G008770Cucumber (Chinese Long) v2cmocuB586
CmoCh02G008770Melon (DHL92) v3.5.1cmomeB560
CmoCh02G008770Watermelon (Charleston Gray)cmowcgB514
CmoCh02G008770Watermelon (Charleston Gray)cmowcgB525
CmoCh02G008770Watermelon (Charleston Gray)cmowcgB553
CmoCh02G008770Watermelon (97103) v1cmowmB546
CmoCh02G008770Watermelon (97103) v1cmowmB549
CmoCh02G008770Watermelon (97103) v1cmowmB577
CmoCh02G008770Cucurbita pepo (Zucchini)cmocpeB574
CmoCh02G008770Cucurbita pepo (Zucchini)cmocpeB588
CmoCh02G008770Bottle gourd (USVL1VR-Ls)cmolsiB532
CmoCh02G008770Bottle gourd (USVL1VR-Ls)cmolsiB547
CmoCh02G008770Bottle gourd (USVL1VR-Ls)cmolsiB550
CmoCh02G008770Bottle gourd (USVL1VR-Ls)cmolsiB553
CmoCh02G008770Cucumber (Gy14) v2cgybcmoB114
CmoCh02G008770Cucumber (Gy14) v2cgybcmoB364
CmoCh02G008770Cucumber (Gy14) v2cgybcmoB789
CmoCh02G008770Cucumber (Gy14) v2cgybcmoB791
CmoCh02G008770Melon (DHL92) v3.6.1cmomedB602
CmoCh02G008770Melon (DHL92) v3.6.1cmomedB628
CmoCh02G008770Melon (DHL92) v3.6.1cmomedB641
CmoCh02G008770Silver-seed gourdcarcmoB0467
CmoCh02G008770Silver-seed gourdcarcmoB0600