Csa6G290900.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G290900.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 14063862 .. 14064301 (-)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTTTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGTATTTCCCCTTAACTCTAAACCAACTTTTCTCTTTCTCTTAACCCATAATACACTCCTATTATCACGTTGCTCTGTTTTTTGAGTTGCAGGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAAACAGAGTATCCATGATCTGGGTTTGGATTTGATATATGTTGTTAATTTTGGTATGGGTTTGTTTTTTTTTTTT

mRNA sequence

ATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAG

Coding sequence (CDS)

ATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGDLEDFVNENDLMICAAKAA*
Homology
[Close]
BLAST of Csa6G290900.1 vs. TrEMBL
Match: A0A0A0KEP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 79
          LEDFVNENDLMICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]
BLAST of Csa6G290900.1 vs. TrEMBL
Match: D7SKV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03210 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-06
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKH------------RLL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    H            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNENDLMICAAKAA 79
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

[Close]
BLAST of Csa6G290900.1 vs. NCBI nr
Match: gi|700192105|gb|KGN47309.1| (hypothetical protein Csa_6G290900 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 79
          LEDFVNENDLMICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]
BLAST of Csa6G290900.1 vs. NCBI nr
Match: gi|297746223|emb|CBI16279.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKH------------RLL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    H            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNENDLMICAAKAA 79
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

The following BLAST results are available for this feature:
BLAST of Csa6G290900.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEP9_CUCSA1.9e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G290900 PE=4 SV=1[more]
D7SKV1_VITVI3.2e-0640.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03210 PE=4 SV=... [more]
BLAST of Csa6G290900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192105|gb|KGN47309.1|2.7e-35100.00hypothetical protein Csa_6G290900 [Cucumis sativus][more]
gi|297746223|emb|CBI16279.3|4.6e-0640.70unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G290900Csa6G290900gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G290900.1Csa6G290900.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G290900.1.utr3p1Csa6G290900.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G290900.1.cds2Csa6G290900.1.cds2CDS
Csa6G290900.1.cds1Csa6G290900.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G290900.1.utr5p1Csa6G290900.1.utr5p1five_prime_UTR