MELO3C024218 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024218
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pectin lyase-like superfamily protein, putative
Location	chr1 : 3962477 .. 3962928 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGCCCTATTGCTGGTACTGCCACCAACATGCATTTTTTAGACATTATAATAGTCAATGTTAGCAACCCAATTCTCATAGACCAAGAGTATTACCCATGGAATCAATGCAATCGCAAGGTATTGATCCCATTTTTGAAATTCTTCATGCATGTCAACTTCATGAACAAATTTGAATTTTCACTTTGATTTTTCAGATTCCATCAAAGATTAAGATTAATAAAGTGAGCTTCAAAAACATTAGAGGAACTTCTGCAACTCCAGTAGCAGTCAAACTTTTTTGTAGTAGCAACCTACCATGTAAAGAAGTAAAAGTGGCTAACATTGACCTCGTTTCTAATGGAATAAAAGGCTCTCTTACATCTGAATGCATGAATGTGAAACCAATCATTTTAGGAATACAAAATCCTCCGATTTGCTCATCCTCTTACACTATTGCTTCAAAATGA

mRNA sequence

ATGGCCAGCCCTATTGCTGGTACTGCCACCAACATGCATTTTTTAGACATTATAATAGTCAATGTTAGCAACCCAATTCTCATAGACCAAGAGTATTACCCATGGAATCAATGCAATCGCAAGATTCCATCAAAGATTAAGATTAATAAAGTGAGCTTCAAAAACATTAGAGGAACTTCTGCAACTCCAGTAGCAGTCAAACTTTTTTGTAGTAGCAACCTACCATGTAAAGAAGTAAAAGTGGCTAACATTGACCTCGTTTCTAATGGAATAAAAGGCTCTCTTACATCTGAATGCATGAATGTGAAACCAATCATTTTAGGAATACAAAATCCTCCGATTTGCTCATCCTCTTACACTATTGCTTCAAAATGA

Coding sequence (CDS)

ATGGCCAGCCCTATTGCTGGTACTGCCACCAACATGCATTTTTTAGACATTATAATAGTCAATGTTAGCAACCCAATTCTCATAGACCAAGAGTATTACCCATGGAATCAATGCAATCGCAAGATTCCATCAAAGATTAAGATTAATAAAGTGAGCTTCAAAAACATTAGAGGAACTTCTGCAACTCCAGTAGCAGTCAAACTTTTTTGTAGTAGCAACCTACCATGTAAAGAAGTAAAAGTGGCTAACATTGACCTCGTTTCTAATGGAATAAAAGGCTCTCTTACATCTGAATGCATGAATGTGAAACCAATCATTTTAGGAATACAAAATCCTCCGATTTGCTCATCCTCTTACACTATTGCTTCAAAATGA

Protein sequence

MASPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYTIASK*

Homology

[Close]

BLAST of MELO3C024218 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-29
Identity = 57/117 (48.72%), Postives = 83/117 (70.94%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G   ++HF DII+ NVSNP++IDQ Y P+N+CN+ +PS++KI+KVSF+NI+GTS T  AV
Sbjct: 280 GVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAV 339

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYTIAS 124
            L  S  +PC+ ++V +ID+  +G +G   S C N+KP + G QNPP+C++S   +S
Sbjct: 340 SLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVCTASAASSS 396

[Close]

BLAST of MELO3C024218 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G A+ MHF DI + +V  PILIDQ Y P+NQC  ++PS +K++K+SFKNI+GTS T  AV
Sbjct: 246 GEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTKEAV 305

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSS 119
           KL CS + PC  V++A+IDL  +G  G  TS C N+KP I G Q P ICS S
Sbjct: 306 KLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAICSGS 357

[Close]

BLAST of MELO3C024218 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-28
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 1


Query: 8   TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVK 67
           T +++HF DI + NV NP++IDQEYYPWNQC++K PSKIK++K+SFKN++GTS T   V 
Sbjct: 288 TVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGTSGTAEGVV 347

Query: 68  LFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSS 118
           L CSS +PC  V++ N+DL  NG     T++C NVKP++ G    P+C +
Sbjct: 348 LICSSAVPCDGVELNNVDLKFNG--APTTAKCTNVKPLVTG--TAPVCQA 393

[Close]

BLAST of MELO3C024218 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G  + +HF DI + NVS+PILIDQ+Y PWN+C +   SK+K++ +SFKNIRGTSA P A+
Sbjct: 288 GAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAI 347

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICS 117
           K  CS + PC+ V++A+ID+  NG + + TS+C+NVKPI +G  NP  CS
Sbjct: 348 KFICSGSSPCQNVELADIDIQHNGAEPA-TSQCLNVKPITIGKLNPIPCS 396

[Close]

BLAST of MELO3C024218 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.7e-28
Identity = 58/110 (52.73%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G  + +HF DI + NVS+PILIDQ+Y PWN+C +   SK+K++ +SFKNIRGTSA P A+
Sbjct: 288 GAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAI 347

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICS 117
           K  CS + PC+ V++A+ID+  NG + + TS+C+NVKPI  G  NP  CS
Sbjct: 348 KFICSGSSPCQNVELADIDIKHNGAEPA-TSQCLNVKPITSGKLNPIPCS 396

[Close]

BLAST of MELO3C024218 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.4e-55
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 2   ASPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSA 61
           ASP+AG ATNMHF DI +VNVSNPILIDQEY PWNQCNR+IPS IKINKVSFKNIRG+SA
Sbjct: 282 ASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKINKVSFKNIRGSSA 341

Query: 62  TPVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYTI 121
           TPVAVKL CSSNLPC+EVKVANIDLV NGIKGS+TSECMNVKPII GIQNPPICSSSYT 
Sbjct: 342 TPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMNVKPIISGIQNPPICSSSYTT 401

Query: 122 ASK 125
           ASK
Sbjct: 402 ASK 404

[Close]

BLAST of MELO3C024218 vs. TrEMBL
Match: E3VSV7_CUCPE (Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 74/114 (64.91%), Postives = 92/114 (80.70%), Query Frame = 1


Query: 3   SPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSAT 62
           S ++  A++MHF DI + NV+NPI+IDQEY PWNQCNRK+PS IKI+KVSFKNIRGTS+T
Sbjct: 291 SAVSYPASDMHFEDIEMENVANPIIIDQEYCPWNQCNRKVPSAIKISKVSFKNIRGTSST 350

Query: 63  PVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICS 117
           PVAVKL CS + PC+ V++A+IDL  +G +G   SEC NVKP I G QNPPIC+
Sbjct: 351 PVAVKLVCSKSNPCEGVEIADIDLTYSGKEGPAVSECSNVKPTISGKQNPPICA 404

[Close]

BLAST of MELO3C024218 vs. TrEMBL
Match: A0A0D2NBK5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G193800 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.7e-33
Identity = 67/114 (58.77%), Postives = 88/114 (77.19%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G+AT++HF DI + NV NPIL+DQEY PWNQC+  +PS+++++K+SFKNIRGTS T +AV
Sbjct: 282 GSATDIHFEDITMDNVGNPILVDQEYCPWNQCDLSVPSRVQLSKLSFKNIRGTSKTQIAV 341

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYT 121
           KL CSS LPC EV++A+IDL  NG +G   S+C NV P + G+QNP  CSS  T
Sbjct: 342 KLICSSGLPCDEVELADIDLTYNGPEGPAISQCSNVHPALSGVQNPAACSSQPT 395

[Close]

BLAST of MELO3C024218 vs. TrEMBL
Match: W9SBW1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020040 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-32
Identity = 67/111 (60.36%), Postives = 85/111 (76.58%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G A+N+HF DI++ NV NP+LIDQEY PWNQCN K+PS+IKI+ VSFKNIRGTS T +AV
Sbjct: 284 GLASNLHFEDIVMENVGNPVLIDQEYCPWNQCNAKVPSRIKISDVSFKNIRGTSTTALAV 343

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSS 118
            L CSS  PC+ V++A+IDL  +G  G + S+C NVKP I G QNP  C++
Sbjct: 344 NLVCSSGFPCQNVEIADIDLQYSGNDGPIMSQCKNVKPTISGKQNPNPCAT 394

[Close]

BLAST of MELO3C024218 vs. TrEMBL
Match: A0A061DMV2_THECC (Polygalacturonase OS=Theobroma cacao GN=TCM_002289 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-32
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G+AT+MHF DII+ NV NPILIDQEY PWN CN K+PS+IK++ +SFK IRGTS+T  AV
Sbjct: 288 GSATDMHFEDIILNNVGNPILIDQEYCPWNLCNLKVPSRIKLSNISFKKIRGTSSTQQAV 347

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSS 118
           +L CS  LPC  V++A+ID+   G  G  TSEC NVKP   G QNPP CSS
Sbjct: 348 RLVCSRGLPCDRVELADIDITYKGPGGPATSECTNVKPRTSGKQNPPACSS 398

[Close]

BLAST of MELO3C024218 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-31
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 8   TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVK 67
           TA+++HF DII+ +VSNPILIDQEY PWNQCN++  S IK+  +SFKNIRGTS    AVK
Sbjct: 279 TASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVK 338

Query: 68  LFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSS 118
           L CS   PC+ V++ +ID+  NG  G  T  C NV P ILG Q+P  CS+
Sbjct: 339 LLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPKILGSQSPKACSA 388

[Close]

BLAST of MELO3C024218 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-30
Identity = 64/115 (55.65%), Postives = 76/115 (66.09%), Query Frame = 1


Query: 6   AGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVA 65
           A TA+ +HF +II+ NVSNPILIDQEY PWNQCN++ PS IK+  +SFKNIRGTS    A
Sbjct: 278 ATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDA 337

Query: 66  VKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYT 121
           VKL CS   PC  V++ NI+L   G  G  T  C NV P ++G QNP  CS+  T
Sbjct: 338 VKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVSPKLVGTQNPKACSAGPT 392

[Close]

BLAST of MELO3C024218 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 5.8e-30
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 1


Query: 8   TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVK 67
           TA+++HF +I++ NVSNPILIDQEY PWNQCN++ PS IK+  +SFK IRGTS    AVK
Sbjct: 279 TASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVK 338

Query: 68  LFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYT 121
           L CS   PC+ V+V ++++   G  G  T +C NV P ++G Q P  CSS  T
Sbjct: 339 LLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKACSSPVT 391

[Close]

BLAST of MELO3C024218 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-28
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1


Query: 8   TATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAVK 67
           TA+N+HF +II+ NVSNPILIDQEY PWNQCN++  S IK+  +SF+ IRGTS    AVK
Sbjct: 280 TASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVK 339

Query: 68  LFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSS 118
           L CS   PC+ V+V +I++   G  G  T  C NV+P ++G Q P  C++
Sbjct: 340 LLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVRPKLVGTQFPKACNT 389

[Close]

BLAST of MELO3C024218 vs. TAIR10
Match: AT3G14040.1 (AT3G14040.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 6.0e-27
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 1


Query: 7   GTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSATPVAV 66
           G A+N+ F DI + NVS P+LIDQEY P+  C   +PSK+K++ V+ KNI+GTSAT VAV
Sbjct: 329 GIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAV 388

Query: 67  KLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICS 117
           KL CS  +PC  + +++I+LV NG +G   S C N+KPI+ G   P  C+
Sbjct: 389 KLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAACT 438

[Close]

BLAST of MELO3C024218 vs. NCBI nr
Match: gi|778730103|ref|XP_011659699.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.9e-55
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 2   ASPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSA 61
           ASP+AG ATNMHF DI +VNVSNPILIDQEY PWNQCNR+IPS IKINKVSFKNIRG+SA
Sbjct: 267 ASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKINKVSFKNIRGSSA 326

Query: 62  TPVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYTI 121
           TPVAVKL CSSNLPC+EVKVANIDLV NGIKGS+TSECMNVKPII GIQNPPICSSSYT 
Sbjct: 327 TPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMNVKPIISGIQNPPICSSSYTT 386

Query: 122 ASK 125
           ASK
Sbjct: 387 ASK 389

[Close]

BLAST of MELO3C024218 vs. NCBI nr
Match: gi|700188231|gb|KGN43464.1| (hypothetical protein Csa_7G037910 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.9e-55
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 2   ASPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSA 61
           ASP+AG ATNMHF DI +VNVSNPILIDQEY PWNQCNR+IPS IKINKVSFKNIRG+SA
Sbjct: 282 ASPVAGIATNMHFSDITMVNVSNPILIDQEYCPWNQCNREIPSNIKINKVSFKNIRGSSA 341

Query: 62  TPVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYTI 121
           TPVAVKL CSSNLPC+EVKVANIDLV NGIKGS+TSECMNVKPII GIQNPPICSSSYT 
Sbjct: 342 TPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSITSECMNVKPIISGIQNPPICSSSYTT 401

Query: 122 ASK 125
           ASK
Sbjct: 402 ASK 404

[Close]

BLAST of MELO3C024218 vs. NCBI nr
Match: gi|659111053|ref|XP_008455553.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 4.9e-55
Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 1


Query: 2   ASPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSA 61
           ASP+AG ATNMHFLDI +VNVSNPILIDQEY PWNQCNRKIPSKIKINKVSFKNIRG+SA
Sbjct: 283 ASPVAGIATNMHFLDITMVNVSNPILIDQEYCPWNQCNRKIPSKIKINKVSFKNIRGSSA 342

Query: 62  TPVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICSSSYT 121
           TPVAVKL CSSNLPC+EVKVANIDLV NGIKGSLTSECMNVKPII G QNPPICSSSYT
Sbjct: 343 TPVAVKLICSSNLPCEEVKVANIDLVYNGIKGSLTSECMNVKPIISGTQNPPICSSSYT 401

[Close]

BLAST of MELO3C024218 vs. NCBI nr
Match: gi|659098032|ref|XP_008449943.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 79/114 (69.30%), Postives = 96/114 (84.21%), Query Frame = 1


Query: 3   SPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSAT 62
           S +A  A++MHF DI +VNVSNP+LIDQEY PWNQCNRK+PSKIKI+KVSFKNIRGTSAT
Sbjct: 25  SAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSAT 84

Query: 63  PVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICS 117
           PVAVKL CS + PC+ V+VA+IDL  +G +G + S+C NVKP+I G QNPPIC+
Sbjct: 85  PVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICA 138

[Close]

BLAST of MELO3C024218 vs. NCBI nr
Match: gi|659097569|ref|XP_008449697.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 79/114 (69.30%), Postives = 96/114 (84.21%), Query Frame = 1


Query: 3   SPIAGTATNMHFLDIIIVNVSNPILIDQEYYPWNQCNRKIPSKIKINKVSFKNIRGTSAT 62
           S +A  A++MHF DI +VNVSNP+LIDQEY PWNQCNRK+PSKIKI+KVSFKNIRGTSAT
Sbjct: 279 SAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSAT 338

Query: 63  PVAVKLFCSSNLPCKEVKVANIDLVSNGIKGSLTSECMNVKPIILGIQNPPICS 117
           PVAVKL CS + PC+ V+VA+IDL  +G +G + S+C NVKP+I G QNPPIC+
Sbjct: 339 PVAVKLVCSQSNPCEGVEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICA 392

The following BLAST results are available for this feature:

BLAST of MELO3C024218 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_TOBAC	6.1e-29	48.72	Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1	[more]
PGLR_OENOR	1.0e-28	54.46	Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1	[more]
PGLR_MEDSA	1.8e-28	51.82	Polygalacturonase OS=Medicago sativa PE=2 SV=1	[more]
PGLR_GOSBA	2.3e-28	52.73	Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1	[more]
PGLR_GOSHI	6.7e-28	52.73	Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1	[more]

BLAST of MELO3C024218 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3B7_CUCSA	3.4e-55	87.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1	[more]
E3VSV7_CUCPE	1.4e-35	64.91	Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1	[more]
A0A0D2NBK5_GOSRA	3.7e-33	58.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G193800 PE=3 SV=1	[more]
W9SBW1_9ROSA	2.4e-32	60.36	Uncharacterized protein OS=Morus notabilis GN=L484_020040 PE=3 SV=1	[more]
A0A061DMV2_THECC	3.1e-32	62.16	Polygalacturonase OS=Theobroma cacao GN=TCM_002289 PE=3 SV=1	[more]

BLAST of MELO3C024218 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07820.1	4.0e-31	56.36	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	1.2e-30	55.65	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	5.8e-30	52.21	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	2.4e-28	51.82	Pectin lyase-like superfamily protein	[more]
AT3G14040.1	6.0e-27	50.00	Pectin lyase-like superfamily protein	[more]

BLAST of MELO3C024218 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730103\|ref\|XP_011659699.1\|	4.9e-55	87.80	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|700188231\|gb\|KGN43464.1\|	4.9e-55	87.80	hypothetical protein Csa_7G037910 [Cucumis sativus]	[more]
gi\|659111053\|ref\|XP_008455553.1\|	4.9e-55	90.76	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
gi\|659098032\|ref\|XP_008449943.1\|	1.4e-38	69.30	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
gi\|659097569\|ref\|XP_008449697.1\|	1.4e-38	69.30	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0016829	lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024218T1	MELO3C024218T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 6..103 score: 7.6
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 7..119 score: 2.34
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 7..117 score: 9.2
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..120 score: 1.8
None	No IPR available	PANTHER	PTHR31375:SF37	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..120 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024218	Cla015661	Watermelon (97103) v1	mewmB241
MELO3C024218	Cla97C02G029040	Watermelon (97103) v2	mewmbB178
MELO3C024218	Cucsa.100530	Cucumber (Gy14) v1	cgymeB121
MELO3C024218	Lsi11G013700	Bottle gourd (USVL1VR-Ls)	lsimeB095
MELO3C024218	Cp4.1LG15g07010	Cucurbita pepo (Zucchini)	cpemeB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024218	Cucurbita pepo (Zucchini)	cpemeB273
MELO3C024218	Cucurbita pepo (Zucchini)	cpemeB609
MELO3C024218	Bottle gourd (USVL1VR-Ls)	lsimeB067
MELO3C024218	Cucumber (Gy14) v2	cgybmeB402
MELO3C024218	Cucumber (Gy14) v2	cgybmeB467
MELO3C024218	Cucumber (Gy14) v2	cgybmeB468
MELO3C024218	Silver-seed gourd	carmeB0199
MELO3C024218	Silver-seed gourd	carmeB1033
MELO3C024218	Cucumber (Chinese Long) v3	cucmeB469
MELO3C024218	Cucumber (Chinese Long) v3	cucmeB547
MELO3C024218	Cucumber (Chinese Long) v3	cucmeB548
MELO3C024218	Wax gourd	mewgoB212
MELO3C024218	Wax gourd	mewgoB235
MELO3C024218	Melon (DHL92) v3.5.1	memeB041
MELO3C024218	Cucumber (Gy14) v1	cgymeB183
MELO3C024218	Cucurbita maxima (Rimu)	cmameB094
MELO3C024218	Cucurbita maxima (Rimu)	cmameB461
MELO3C024218	Cucurbita moschata (Rifu)	cmomeB090
MELO3C024218	Cucurbita moschata (Rifu)	cmomeB452
MELO3C024218	Wild cucumber (PI 183967)	cpimeB535
MELO3C024218	Wild cucumber (PI 183967)	cpimeB538
MELO3C024218	Wild cucumber (PI 183967)	cpimeB457
MELO3C024218	Cucumber (Chinese Long) v2	cumeB530
MELO3C024218	Watermelon (Charleston Gray)	mewcgB195