Cp4.1LG15g07010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g07010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPolygalacturonase
LocationCp4.1LG15 : 7528415 .. 7530278 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCAATAATGTCTTCACTAACCATTTCAAGATCATCCACATTCATCATCTTCTTCTCTCTTTGTCTCATCACCAATGGCCTAGCTGCTGATTTCCATGTCAAAAGATATGGAGCAAAAGCCAATGGCAACTCGGATGATAGCCAGGTTTGTTCCTATGGTCGTACGAAATCTTATCATTATAATGTAGCTAGTTCGAACACGAAGTTGAATAACGTTTCGATTTTGAGTTTGAGAAAGCTAAAAGTTGATGAATTTGTGATGGGTTATTTGTTTTGTTTGTAATGTAGGCGATTATGAAGGCTTGGAAGGATGCTTGCATGTCAAGAAAGCCAAGCAAAGTAGTGATATCAGGTGGGAGATATGTGGTGAATTCGATGAAGTTTAAAGGGCCATGCATGGCGCCCGTTCATATTCAAATGGAGGGTAGACTCGAAGCGCCCCTCAATATTCAACACATGAAATCTGACGACAATTGGATCATTTTTGAGTATATTAATGGTTTAACAATCTCTGGAAAAGGCATTTTTGATGGCCGAGGATCTCTTGCTTGGAAGCAAAATCAATGTGCTTCTTCGGGCAAATGCGACTCTCTCCCTATTGTGAGTGTTCGTTTCGTTAAAATATTCATTTTGGTCGTTAAAACGTCTACGTAGCATTAACCATGCATGTTTTACAAGAAGTTTTCTTGGATTGCAAGCTAACGAATGCGTATTGTTTACCATAGAGCTTGAGATTCTACAGCCTCAACAACACTATAATTCGAGGCATAACTTCAACAGACAGCAAGTTCTTCCACATGAACGTGCACAACTGCAGGAACATGACCATTCAAAACATCATCGTCAACGCCCCCGGCATAAGTCCCAACACCGACGGGATCCATATTGGAGGATCGAGCGGGGTGACTATAAGCAATGCCAGGATCGAAACTGGTGACGATTGTGTCTCGATCGGCGACGGAAGCCAACAGATAATCGTCGAGAAGGTGACATGTGGTCCGGGTCACGGGATTAGCATTGGAAGCCTCGGAAAGTACAAGAATGAGAAACCAGTGTCTGGAATCATTGTCAGAAATTGCACAATCAAAAACACCATGTTCGGAGTTAGGATCAAAACATGGCCAGATTCTACTCCAGGAATTGCCACCAATATGCACTTTAATAGCATTGTGATGAAAAATGTTGGCACTCCTATCCTAATTGACCAACAATATTGCCCATACGGAAAGTGCCGATTCAAGGTATTTCTATGTTTAATACGTTCTTTTTTGAAAAACTTAAGCTCCGTTGGATAATTATTTAATTTTAGAATTTGATTTGTGTTGAAACTATAGATTCCATCGAGAGTTGCAATAAGCGATGTTGGATTCAGGAACATCGTAGGGACATCGACAACTCGAGTGGCTGTAAAGCTTGTGTGCAGCCGAGGGTATCCGTGCAAGAACGTGAAGCTATCAAACATAAACTTGAGATACATAGGCACCAATGGGACAGCCATATCAGAATGTTCCAATGTGAAGCCTACAATATCTGGAAGAGTGATGCCGCCAGCCTGCACTAGGGCTTTTGCAATATGATTCATCCACAACCCAACAAACAAGACATATGAATATATGAATACTAGCACCCTTTCATGCTTTTTAATGTACATGAGCATGATGAGAGGTGAAGTTTAAATGTATCCCATAGTCGGGTTAGGCCCAAATGTTACGGTCACACTATATATATAAATACATACAAAATATAAATTTCGATTGATTAACATTCATGTTGTTCATGTGTTTAAAGATCTGAATCTTCCACGAAAAAATGTAAATTTATTATATTGTTTTTAAAAAAATTTAAATAACCTTTGAAATAAT

mRNA sequence

CATTCAATAATGTCTTCACTAACCATTTCAAGATCATCCACATTCATCATCTTCTTCTCTCTTTGTCTCATCACCAATGGCCTAGCTGCTGATTTCCATGTCAAAAGATATGGAGCAAAAGCCAATGGCAACTCGGATGATAGCCAGGCGATTATGAAGGCTTGGAAGGATGCTTGCATGTCAAGAAAGCCAAGCAAAGTAGTGATATCAGGTGGGAGATATGTGATTCCATCGAGAGTTGCAATAAGCGATGTTGGATTCAGGAACATCGTAGGGACATCGACAACTCGAGTGGCTGTAAAGCTTGTGTGCAGCCGAGGGTATCCGTGCAAGAACGTGAAGCTATCAAACATAAACTTGAGATACATAGGCACCAATGGGACAGCCATATCAGAATGTTCCAATGTGAAGCCTACAATATCTGGAAGAGTGATGCCGCCAGCCTGCACTAGGGCTTTTGCAATATGATTCATCCACAACCCAACAAACAAGACATATGAATATATGAATACTAGCACCCTTTCATGCTTTTTAATGTACATGAGCATGATGAGAGGTGAAGTTTAAATGTATCCCATAGTCGGGTTAGGCCCAAATGTTACGGTCACACTATATATATAAATACATACAAAATATAAATTTCGATTGATTAACATTCATGTTGTTCATGTGTTTAAAGATCTGAATCTTCCACGAAAAAATGTAAATTTATTATATTGTTTTTAAAAAAATTTAAATAACCTTTGAAATAAT

Coding sequence (CDS)

ATGTCTTCACTAACCATTTCAAGATCATCCACATTCATCATCTTCTTCTCTCTTTGTCTCATCACCAATGGCCTAGCTGCTGATTTCCATGTCAAAAGATATGGAGCAAAAGCCAATGGCAACTCGGATGATAGCCAGGCGATTATGAAGGCTTGGAAGGATGCTTGCATGTCAAGAAAGCCAAGCAAAGTAGTGATATCAGGTGGGAGATATGTGATTCCATCGAGAGTTGCAATAAGCGATGTTGGATTCAGGAACATCGTAGGGACATCGACAACTCGAGTGGCTGTAAAGCTTGTGTGCAGCCGAGGGTATCCGTGCAAGAACGTGAAGCTATCAAACATAAACTTGAGATACATAGGCACCAATGGGACAGCCATATCAGAATGTTCCAATGTGAAGCCTACAATATCTGGAAGAGTGATGCCGCCAGCCTGCACTAGGGCTTTTGCAATATGA

Protein sequence

MSSLTISRSSTFIIFFSLCLITNGLAADFHVKRYGAKANGNSDDSQAIMKAWKDACMSRKPSKVVISGGRYVIPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNVKPTISGRVMPPACTRAFAI
Homology
[Close]
BLAST of Cp4.1LG15g07010 vs. Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           +PS+V +SDV  + I GTS T+VAVKL+CS+G PC N+ LS+INL + G  G A+S CSN
Sbjct: 363 VPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 422

Query: 133 VKPTISGRVMPPACT 148
           +KP +SG+++P ACT
Sbjct: 423 IKPILSGKLVPAACT 437

[Close]
BLAST of Cp4.1LG15g07010 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           +PS V +S + F+NI GTSTT+ AVKLVCS+ +PC  V+L++I+L Y G  G A S C N
Sbjct: 281 VPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCEN 340

Query: 133 VKPTISGRVMPPACTRAFA 152
           +KPTI G+ +P  C+ + A
Sbjct: 341 IKPTIKGKQIPAICSGSAA 359

[Close]
BLAST of Cp4.1LG15g07010 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-16
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 74  PSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNV 133
           PSR+ +S++ F NI GTST +VAV + CS G PC N+K+  INL Y G  G A S CSNV
Sbjct: 303 PSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSNV 362

Query: 134 KPTISGRVMP 144
           KPT SG+ +P
Sbjct: 363 KPTFSGKQVP 372

[Close]
BLAST of Cp4.1LG15g07010 vs. Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 74  PSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNV 133
           PS + + D+ FRNI GTS  + AVKL+CS+G+PC+NV++ +IN+ Y G +G    EC+NV
Sbjct: 314 PSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNV 373

Query: 134 KPTISGRVMPPAC 147
            P + G   P AC
Sbjct: 374 TPKLVGAQNPKAC 386

[Close]
BLAST of Cp4.1LG15g07010 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           +PS+V IS V F+NI GTS T+ AV L+ S+G PC+ +++ +I++ Y G  G A S C N
Sbjct: 315 LPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCEN 374

Query: 133 VKPTISGRVMPPACTRAFA 152
           +KP++ G+  PP CT + A
Sbjct: 375 IKPSLKGKQNPPVCTASAA 393

[Close]
BLAST of Cp4.1LG15g07010 vs. TrEMBL
Match: A0A0A0K6I9_CUCSA (Polygalacturonase OS=Cucumis sativus GN=Csa_7G033440 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 1  MSSLTISRSSTFIIFFSLCLITNGLAADFHVKRYGAKANGNSDDSQAIMKAWKDACMSRK 60
          MSS TISRS+TFI+F  + LITN  AADFHVKRYGA+ANGNSDDSQAIMKAWKDAC S K
Sbjct: 1  MSSSTISRSTTFILFLFIGLITNAQAADFHVKRYGARANGNSDDSQAIMKAWKDACSSTK 60

Query: 61 PSKVVISGGRYVIPS 76
          PSK+VI GGRYV+ S
Sbjct: 61 PSKIVIPGGRYVVDS 75

[Close]
BLAST of Cp4.1LG15g07010 vs. TrEMBL
Match: A0A058ZYH2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00661 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.7e-20
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           IPS+V ISDV FRNI GTS T +AVKLVCSRG PC+ V+L++INLRY G NGTA S+C N
Sbjct: 292 IPSKVKISDVSFRNIRGTSATPLAVKLVCSRGVPCQKVELADINLRYNGRNGTATSQCEN 351

Query: 133 VKPTISGRVMPPAC 147
           VKPTI+G++  P C
Sbjct: 352 VKPTIAGKLSLPIC 365

[Close]
BLAST of Cp4.1LG15g07010 vs. TrEMBL
Match: A0A061FNR4_THECC (Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_043174 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.8e-19
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 74  PSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNV 133
           PSRV IS+V F+NI GTS T+VAVKL CS G PC+NV++ +INL YIGT G A S+CSNV
Sbjct: 324 PSRVKISNVSFKNIRGTSATQVAVKLACSSGIPCENVEIGDINLSYIGTKGPATSQCSNV 383

Query: 134 KPTISGRVMPPAC 147
           KPTI+GR  P AC
Sbjct: 384 KPTIAGRQTPLAC 396

[Close]
BLAST of Cp4.1LG15g07010 vs. TrEMBL
Match: A0A161ZUB4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021113 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.1e-18
Identity = 41/74 (55.41%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 74  PSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNV 133
           PS+V IS+V F+ I GTS+T+VA+K+ CS+G PC+NV+L++INL+Y G +G  +S+C NV
Sbjct: 306 PSKVKISEVSFKGIHGTSSTKVAIKIACSKGIPCQNVELNDINLQYHGPDGNGVSQCVNV 365

Query: 134 KPTISGRVMPPACT 148
            PT++G++ PPACT
Sbjct: 366 LPTMNGQIFPPACT 379

[Close]
BLAST of Cp4.1LG15g07010 vs. TrEMBL
Match: Q39094_ARATH (Exopolygalacturonase OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           +PS+V +SDV  +NI GTS T+VAVKL+CS+G PC N+ LS+INL + G  G A+S CSN
Sbjct: 364 VPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 423

Query: 133 VKPTISGRVMPPACT 148
           +KP +SG+++P ACT
Sbjct: 424 IKPILSGKLVPAACT 438

[Close]
BLAST of Cp4.1LG15g07010 vs. TAIR10
Match: AT3G14040.1 (AT3G14040.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-20
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           +PS+V +SDV  +NI GTS T+VAVKL+CS+G PC N+ LS+INL + G  G A+S CSN
Sbjct: 364 VPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 423

Query: 133 VKPTISGRVMPPACT 148
           +KP +SG+++P ACT
Sbjct: 424 IKPILSGKLVPAACT 438

[Close]
BLAST of Cp4.1LG15g07010 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 94.4 bits (233), Expect = 6.6e-20
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           +PS+V +SDV  + I GTS T+VAVKL+CS+G PC N+ LS+INL + G  G A+S CSN
Sbjct: 363 VPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 422

Query: 133 VKPTISGRVMPPACT 148
           +KP +SG+++P ACT
Sbjct: 423 IKPILSGKLVPAACT 437

[Close]
BLAST of Cp4.1LG15g07010 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-16
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 1 

Query: 74  PSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNV 133
           PS + ++++ F+ I GTS  + AVKL+CS+GYPC+NV++ ++N++Y G +G A  +CSNV
Sbjct: 314 PSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNV 373

Query: 134 KPTISGRVMPPACT 148
            P + G  +P AC+
Sbjct: 374 SPKLVGTQIPKACS 387

[Close]
BLAST of Cp4.1LG15g07010 vs. TAIR10
Match: AT1G78400.1 (AT1G78400.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.8e-16
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 75  SRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNVK 134
           S++ I DV F+NI GTST + AVKL CS+  PCKNV+L NIN+ + G +G A S C NV 
Sbjct: 331 SKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENVG 390

Query: 135 PTISGRVMPPACTR 149
             I G++ PP+C R
Sbjct: 391 GWIGGKISPPSCIR 404

[Close]
BLAST of Cp4.1LG15g07010 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-15
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1 

Query: 75  SRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSNVK 134
           S + ++++ FR I GTS  + AVKL+CS+GYPC+NV++ +IN++Y G +G A   CSNV+
Sbjct: 316 SSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVR 375

Query: 135 PTISGRVMPPAC 147
           P + G   P AC
Sbjct: 376 PKLVGTQFPKAC 387

[Close]
BLAST of Cp4.1LG15g07010 vs. NCBI nr
Match: gi|659124341|ref|XP_008462107.1| (PREDICTED: exopolygalacturonase clone GBGA483 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           +PSRV ISDVGF+NI GTSTT+VAVKLVCSRGYPCKNVKLSNINL+Y GTNGTAISECSN
Sbjct: 324 VPSRVQISDVGFKNIRGTSTTQVAVKLVCSRGYPCKNVKLSNINLKYSGTNGTAISECSN 383

Query: 133 VKPTISGRVMPPACTRAFA 152
           VKP + GRV+PPACTRAFA
Sbjct: 384 VKPAVVGRVVPPACTRAFA 402

[Close]
BLAST of Cp4.1LG15g07010 vs. NCBI nr
Match: gi|449453736|ref|XP_004144612.1| (PREDICTED: exopolygalacturonase clone GBGA483 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           IPSRV IS+VGF+NI GTSTT+VAVKLVCSRGYPCKNVKLSNINL+Y GTNGTAISECSN
Sbjct: 323 IPSRVQISNVGFKNIRGTSTTQVAVKLVCSRGYPCKNVKLSNINLKYSGTNGTAISECSN 382

Query: 133 VKPTISGRVMPPACTRAFA 152
           VKP I+G V+PPACTRAFA
Sbjct: 383 VKPAIAGSVVPPACTRAFA 401

[Close]
BLAST of Cp4.1LG15g07010 vs. NCBI nr
Match: gi|700188203|gb|KGN43436.1| (Polygalacturonase [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 1  MSSLTISRSSTFIIFFSLCLITNGLAADFHVKRYGAKANGNSDDSQAIMKAWKDACMSRK 60
          MSS TISRS+TFI+F  + LITN  AADFHVKRYGA+ANGNSDDSQAIMKAWKDAC S K
Sbjct: 1  MSSSTISRSTTFILFLFIGLITNAQAADFHVKRYGARANGNSDDSQAIMKAWKDACSSTK 60

Query: 61 PSKVVISGGRYVIPS 76
          PSK+VI GGRYV+ S
Sbjct: 61 PSKIVIPGGRYVVDS 75

[Close]
BLAST of Cp4.1LG15g07010 vs. NCBI nr
Match: gi|629080412|gb|KCW46857.1| (hypothetical protein EUGRSUZ_K00661 [Eucalyptus grandis])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           IPS+V ISDV FRNI GTS T +AVKLVCSRG PC+ V+L++INLRY G NGTA S+C N
Sbjct: 292 IPSKVKISDVSFRNIRGTSATPLAVKLVCSRGVPCQKVELADINLRYNGRNGTATSQCEN 351

Query: 133 VKPTISGRVMPPAC 147
           VKPTI+G++  P C
Sbjct: 352 VKPTIAGKLSLPIC 365

[Close]
BLAST of Cp4.1LG15g07010 vs. NCBI nr
Match: gi|702501707|ref|XP_010038560.1| (PREDICTED: exopolygalacturonase [Eucalyptus grandis])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 73  IPSRVAISDVGFRNIVGTSTTRVAVKLVCSRGYPCKNVKLSNINLRYIGTNGTAISECSN 132
           IPS+V ISDV FRNI GTS T +AVKLVCSRG PC+ V+L++INLRY G NGTA S+C N
Sbjct: 329 IPSKVKISDVSFRNIRGTSATPLAVKLVCSRGVPCQKVELADINLRYNGRNGTATSQCEN 388

Query: 133 VKPTISGRVMPPAC 147
           VKPTI+G++  P C
Sbjct: 389 VKPTIAGKLSLPIC 402

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g07010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR2_ARATH1.2e-1856.00Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=... [more]
PGLR_OENOR5.0e-1750.63Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR2_PLAAC2.5e-1655.71Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_BRANA3.0e-1447.95Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR_TOBAC3.0e-1445.57Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
BLAST of Cp4.1LG15g07010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6I9_CUCSA1.4e-2378.67Polygalacturonase OS=Cucumis sativus GN=Csa_7G033440 PE=3 SV=1[more]
A0A058ZYH2_EUCGR9.7e-2067.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00661 PE=3 SV=1[more]
A0A061FNR4_THECC4.8e-1967.12Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_043174... [more]
A0A161ZUB4_DAUCA9.1e-1855.41Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021113 PE=4 SV=1[more]
Q39094_ARATH2.0e-1757.33Exopolygalacturonase OS=Arabidopsis thaliana PE=2 SV=1[more]
BLAST of Cp4.1LG15g07010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G14040.11.0e-2057.33 Pectin lyase-like superfamily protein[more]
AT3G07850.16.6e-2056.00 Pectin lyase-like superfamily protein[more]
AT5G48140.14.5e-1644.59 Pectin lyase-like superfamily protein[more]
AT1G78400.15.8e-1652.70 Pectin lyase-like superfamily protein[more]
AT3G07830.12.9e-1547.22 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG15g07010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124341|ref|XP_008462107.1|3.5e-3186.08PREDICTED: exopolygalacturonase clone GBGA483 [Cucumis melo][more]
gi|449453736|ref|XP_004144612.1|1.8e-3086.08PREDICTED: exopolygalacturonase clone GBGA483 [Cucumis sativus][more]
gi|700188203|gb|KGN43436.1|2.1e-2378.67Polygalacturonase [Cucumis sativus][more]
gi|629080412|gb|KCW46857.1|1.4e-1967.57hypothetical protein EUGRSUZ_K00661 [Eucalyptus grandis][more]
gi|702501707|ref|XP_010038560.1|1.4e-1967.57PREDICTED: exopolygalacturonase [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0016829 lyase activity
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07010.1Cp4.1LG15g07010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 74..136
score: 6.7
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 74..147
score: 4.0E-18coord: 11..76
score: 1.82
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 11..76
score: 1.1E-12coord: 77..147
score: 1.4
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 74..148
score: 9.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g07010Cla015662Watermelon (97103) v1cpewmB268
Cp4.1LG15g07010MELO3C024218Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g07010MELO3C024218.2Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g07010CsaV3_7G002760Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g07010Bhi05G001267Wax gourdcpewgoB0326
Cp4.1LG15g07010CsGy7G002540Cucumber (Gy14) v2cgybcpeB910
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g07010Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g07010Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g07010Cucumber (Gy14) v1cgycpeB0287
Cp4.1LG15g07010Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g07010Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g07010Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g07010Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g07010Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g07010Wild cucumber (PI 183967)cpecpiB251
Cp4.1LG15g07010Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g07010Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g07010Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g07010Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g07010Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g07010Cucumber (Gy14) v2cgybcpeB751
Cp4.1LG15g07010Silver-seed gourdcarcpeB0281
Cp4.1LG15g07010Silver-seed gourdcarcpeB0484
Cp4.1LG15g07010Silver-seed gourdcarcpeB1481
Cp4.1LG15g07010Cucumber (Chinese Long) v3cpecucB0316
Cp4.1LG15g07010Wax gourdcpewgoB0336